RNA–Protein interactions for RNA: ENST00000533834.1

RNPC3-209, Transcript of RNA binding region (RNP1, RRM) containing 3, humanhuman

TSL 1 (best)

Gene RNPC3, Length 3,658 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNPC3-209ENST00000533834 PBRM1Q86U86 1689 aa11.18□□□□□ -0.62
RNPC3-209ENST00000533834 SNAPC4Q5SXM2 1469 aa11.16□□□□□ -0.62
RNPC3-209ENST00000533834 EFCAB5A4FU69 1503 aa11.15□□□□□ -0.62
RNPC3-209ENST00000533834 AQRO60306 1485 aaKnown RBP eCLIP11.14□□□□□ -0.63
RNPC3-209ENST00000533834 RAD54L2Q9Y4B4 1467 aa11.14□□□□□ -0.63
RNPC3-209ENST00000533834 ARHGEF11O15085 1522 aa11.12□□□□□ -0.63
RNPC3-209ENST00000533834 MAPKBP1O60336 1514 aa11.11□□□□□ -0.63
RNPC3-209ENST00000533834 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.1□□□□□ -0.63
RNPC3-209ENST00000533834 LRRC9Q6ZRR7 1453 aa11.08□□□□□ -0.64
RNPC3-209ENST00000533834 THOC2Q8NI27 1593 aaKnown RBP11.08□□□□□ -0.64
RNPC3-209ENST00000533834 KANK4Q5T7N3 995 aaPredicted RBP11.08□□□□□ -0.64
RNPC3-209ENST00000533834 FYCO1Q9BQS8 1478 aa11.07□□□□□ -0.64
RNPC3-209ENST00000533834 UBTFP17480 764 aaKnown RBP11.07□□□□□ -0.64
RNPC3-209ENST00000533834 ADAMTS12P58397 1594 aa11.07□□□□□ -0.64
RNPC3-209ENST00000533834 CARMIL1Q5VZK9 1371 aa11.06□□□□□ -0.64
RNPC3-209ENST00000533834 DHX57Q6P158 1386 aaKnown RBP11.05□□□□□ -0.64
RNPC3-209ENST00000533834 GRIN2BQ13224 1484 aa11.05□□□□□ -0.64
RNPC3-209ENST00000533834 WDR62O43379 1518 aa11.04□□□□□ -0.64
RNPC3-209ENST00000533834 MAGI3Q5TCQ9 1506 aa11.03□□□□□ -0.64
RNPC3-209ENST00000533834 CASKIN1Q8WXD9 1431 aa11.02□□□□□ -0.65
RNPC3-209ENST00000533834 DNAJC5BQ9UF47 199 aa11.02□□□□□ -0.65
RNPC3-209ENST00000533834 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.99□□□□□ -0.65
RNPC3-209ENST00000533834 KDM5BQ9UGL1 1544 aa10.99□□□□□ -0.65
RNPC3-209ENST00000533834 PHLDB1Q86UU1 1377 aa10.98□□□□□ -0.65
RNPC3-209ENST00000533834 GCC2Q8IWJ2 1684 aa10.97□□□□□ -0.65
RNPC3-209ENST00000533834 CLSPNQ9HAW4 1339 aa10.95□□□□□ -0.66
RNPC3-209ENST00000533834 GAPVD1Q14C86 1478 aa10.95□□□□□ -0.66
RNPC3-209ENST00000533834 UGGT2Q9NYU1 1516 aa10.95□□□□□ -0.66
RNPC3-209ENST00000533834 CCNB3Q8WWL7 1395 aa10.94□□□□□ -0.66
RNPC3-209ENST00000533834 DENND4BO75064 1496 aaPredicted RBP10.94□□□□□ -0.66
RNPC3-209ENST00000533834 FHAD1B1AJZ9 1412 aa10.93□□□□□ -0.66
RNPC3-209ENST00000533834 FHOD3Q2V2M9 1422 aa10.92□□□□□ -0.66
RNPC3-209ENST00000533834 EIF4G3O43432 1585 aaKnown RBP10.92□□□□□ -0.66
RNPC3-209ENST00000533834 TCOF1Q13428 1488 aaKnown RBP10.92□□□□□ -0.66
RNPC3-209ENST00000533834 PDS5BQ9NTI5 1447 aa10.91□□□□□ -0.66
RNPC3-209ENST00000533834 MRC2Q9UBG0 1479 aa10.91□□□□□ -0.66
RNPC3-209ENST00000533834 CCER1Q8TC90 406 aaPredicted RBP10.91□□□□□ -0.66
RNPC3-209ENST00000533834 SUPT6HQ7KZ85 1726 aaKnown RBP10.91□□□□□ -0.66
RNPC3-209ENST00000533834 IQGAP2Q13576 1575 aa10.91□□□□□ -0.66
RNPC3-209ENST00000533834 PTPN23Q9H3S7 1636 aa10.9□□□□□ -0.66
RNPC3-209ENST00000533834 PTPRKQ15262 1439 aa10.9□□□□□ -0.66
RNPC3-209ENST00000533834 ADCY10Q96PN6 1610 aa10.89□□□□□ -0.67
RNPC3-209ENST00000533834 KIAA0556O60303 1618 aa10.89□□□□□ -0.67
RNPC3-209ENST00000533834 SCAF1Q9H7N4 1312 aaKnown RBP10.88□□□□□ -0.67
RNPC3-209ENST00000533834 EHBP1L1Q8N3D4 1523 aa10.88□□□□□ -0.67
RNPC3-209ENST00000533834 DISP1Q96F81 1524 aa10.88□□□□□ -0.67
RNPC3-209ENST00000533834 KDM6BO15054 1643 aa10.87□□□□□ -0.67
RNPC3-209ENST00000533834 HECW1Q76N89 1606 aa10.87□□□□□ -0.67
RNPC3-209ENST00000533834 CROCC2H7BZ55 1655 aa10.86□□□□□ -0.67
RNPC3-209ENST00000533834 CEP170Q5SW79 1584 aa10.85□□□□□ -0.67
RNPC3-209ENST00000533834 ZNF608Q9ULD9 1512 aaPredicted RBP10.85□□□□□ -0.67
RNPC3-209ENST00000533834 TTBK1Q5TCY1 1321 aaPredicted RBP10.84□□□□□ -0.67
RNPC3-209ENST00000533834 FMN1Q68DA7 1419 aa10.84□□□□□ -0.67
RNPC3-209ENST00000533834 RAB3GAP2Q9H2M9 1393 aa10.84□□□□□ -0.67
RNPC3-209ENST00000533834 FGD6Q6ZV73 1430 aa10.83□□□□□ -0.68
RNPC3-209ENST00000533834 IFT140Q96RY7 1462 aa10.82□□□□□ -0.68
RNPC3-209ENST00000533834 TDRD9Q8NDG6 1382 aaKnown RBP10.82□□□□□ -0.68
RNPC3-209ENST00000533834 ZNF316A6NFI3 1004 aaPredicted RBP10.81□□□□□ -0.68
RNPC3-209ENST00000533834 NCOA2Q15596 1464 aa10.81□□□□□ -0.68
RNPC3-209ENST00000533834 CCDC18Q5T9S5 1454 aa10.81□□□□□ -0.68
RNPC3-209ENST00000533834 HFM1A2PYH4 1435 aa10.8□□□□□ -0.68
RNPC3-209ENST00000533834 CACNB1Q02641 598 aaPredicted RBP10.8□□□□□ -0.68
RNPC3-209ENST00000533834 SETD5Q9C0A6 1442 aa10.8□□□□□ -0.68
RNPC3-209ENST00000533834 EPRSP07814 1512 aaKnown RBP10.79□□□□□ -0.68
RNPC3-209ENST00000533834 AKNAQ7Z591 1439 aa10.79□□□□□ -0.68
RNPC3-209ENST00000533834 HNRNPUL2Q1KMD3 747 aaKnown RBP10.79□□□□□ -0.68
RNPC3-209ENST00000533834 DNMT1P26358 1616 aaKnown RBP10.79□□□□□ -0.68
RNPC3-209ENST00000533834 RAPGEF6Q8TEU7 1601 aa10.79□□□□□ -0.68
RNPC3-209ENST00000533834 POLR1AO95602 1720 aaPredicted RBP10.78□□□□□ -0.68
RNPC3-209ENST00000533834 DIEXFQ68CQ4 756 aaKnown RBP10.78□□□□□ -0.68
RNPC3-209ENST00000533834 NAIPQ13075 1403 aa10.77□□□□□ -0.69
RNPC3-209ENST00000533834 MYOM3Q5VTT5 1437 aa10.77□□□□□ -0.69
RNPC3-209ENST00000533834 NUP153P49790 1475 aaKnown RBP10.76□□□□□ -0.69
RNPC3-209ENST00000533834 GRIN2AQ12879 1464 aa10.76□□□□□ -0.69
RNPC3-209ENST00000533834 ADGBQ8N7X0 1667 aa10.75□□□□□ -0.69
RNPC3-209ENST00000533834 CDC42BPAQ5VT25 1732 aa10.75□□□□□ -0.69
RNPC3-209ENST00000533834 CDK13Q14004 1512 aaKnown RBP10.75□□□□□ -0.69
RNPC3-209ENST00000533834 SHROOM2Q13796 1616 aa10.75□□□□□ -0.69
RNPC3-209ENST00000533834 KIAA0586Q9BVV6 1533 aa10.75□□□□□ -0.69
RNPC3-209ENST00000533834 NEUROD1Q13562 356 aa10.74□□□□□ -0.69
RNPC3-209ENST00000533834 ABCA8O94911 1581 aa10.73□□□□□ -0.69
RNPC3-209ENST00000533834 NUP160Q12769 1436 aa10.73□□□□□ -0.69
RNPC3-209ENST00000533834 MAGI1Q96QZ7 1491 aaPredicted RBP10.73□□□□□ -0.69
RNPC3-209ENST00000533834 ACIN1Q9UKV3 1341 aaKnown RBP10.72□□□□□ -0.69
RNPC3-209ENST00000533834 PLPPR3Q6T4P5 718 aa10.71□□□□□ -0.69
RNPC3-209ENST00000533834 KIF14Q15058 1648 aa10.71□□□□□ -0.69
RNPC3-209ENST00000533834 UACAQ9BZF9 1416 aa10.7□□□□□ -0.7
RNPC3-209ENST00000533834 ITSN2Q9NZM3 1697 aa10.7□□□□□ -0.7
RNPC3-209ENST00000533834 MIA2Q96PC5 1412 aa10.69□□□□□ -0.7
RNPC3-209ENST00000533834 RANGAP1P46060 587 aaPredicted RBP10.69□□□□□ -0.7
RNPC3-209ENST00000533834 SYNJ2O15056 1496 aa10.67□□□□□ -0.7
RNPC3-209ENST00000533834 MIER1Q8N108 512 aa10.67□□□□□ -0.7
RNPC3-209ENST00000533834 ABCC10Q5T3U5 1492 aa10.65□□□□□ -0.7
RNPC3-209ENST00000533834 CHD1O14646 1710 aa10.65□□□□□ -0.71
RNPC3-209ENST00000533834 ADGRL2O95490 1459 aa10.65□□□□□ -0.71
RNPC3-209ENST00000533834 CDC42BPBQ9Y5S2 1711 aa10.64□□□□□ -0.71
RNPC3-209ENST00000533834 MBD5Q9P267 1494 aa10.64□□□□□ -0.71
RNPC3-209ENST00000533834 APLP2Q06481 763 aa10.64□□□□□ -0.71
RNPC3-209ENST00000533834 TEX14Q8IWB6 1497 aa10.62□□□□□ -0.71
RNPC3-209ENST00000533834 KDM5DQ9BY66 1539 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms