RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 CUL7Q14999 1698 aa26.54■■□□□ 1.84
CPSF1-211ENST00000533492 CARMIL1Q5VZK9 1371 aa26.5■■□□□ 1.83
CPSF1-211ENST00000533492 RUSC2Q8N2Y8 1516 aa26.49■■□□□ 1.83
CPSF1-211ENST00000533492 KIAA0586Q9BVV6 1533 aa26.46■■□□□ 1.83
CPSF1-211ENST00000533492 NPM1P06748 294 aaKnown RBP eCLIP26.32■■□□□ 1.8
CPSF1-211ENST00000533492 RAPGEF2Q9Y4G8 1499 aa26.26■■□□□ 1.79
CPSF1-211ENST00000533492 CARMIL2Q6F5E8 1435 aa26.23■■□□□ 1.79
CPSF1-211ENST00000533492 TTBK1Q5TCY1 1321 aaPredicted RBP26.23■■□□□ 1.79
CPSF1-211ENST00000533492 IQGAP2Q13576 1575 aa26.22■■□□□ 1.79
CPSF1-211ENST00000533492 PTPRGP23470 1445 aa26.21■■□□□ 1.79
CPSF1-211ENST00000533492 TNIKQ9UKE5 1360 aa26.17■■□□□ 1.78
CPSF1-211ENST00000533492 ADCY10Q96PN6 1610 aa26.16■■□□□ 1.78
CPSF1-211ENST00000533492 FAM69CQ0P6D2 419 aa26.11■■□□□ 1.77
CPSF1-211ENST00000533492 KIF13AQ9H1H9 1805 aa26.09■■□□□ 1.77
CPSF1-211ENST00000533492 MAPKBP1O60336 1514 aa26.09■■□□□ 1.77
CPSF1-211ENST00000533492 ABCC10Q5T3U5 1492 aa26.06■■□□□ 1.76
CPSF1-211ENST00000533492 DISP1Q96F81 1524 aa26.06■■□□□ 1.76
CPSF1-211ENST00000533492 UGGT2Q9NYU1 1516 aa26.05■■□□□ 1.76
CPSF1-211ENST00000533492 PRXQ9BXM0 1461 aa26.02■■□□□ 1.76
CPSF1-211ENST00000533492 UACAQ9BZF9 1416 aa25.99■■□□□ 1.75
CPSF1-211ENST00000533492 CTTNBP2Q8WZ74 1663 aa25.99■■□□□ 1.75
CPSF1-211ENST00000533492 ABCC2Q92887 1545 aa25.98■■□□□ 1.75
CPSF1-211ENST00000533492 CSRNP3Q8WYN3 585 aa25.98■■□□□ 1.75
CPSF1-211ENST00000533492 DIP2BQ9P265 1576 aa25.97■■□□□ 1.75
CPSF1-211ENST00000533492 KIAA0556O60303 1618 aa25.96■■□□□ 1.75
CPSF1-211ENST00000533492 UHRF1BP1LA0JNW5 1464 aa25.96■■□□□ 1.75
CPSF1-211ENST00000533492 GOLGA3Q08378 1498 aa25.92■■□□□ 1.74
CPSF1-211ENST00000533492 ASXL2Q76L83 1435 aa25.88■■□□□ 1.73
CPSF1-211ENST00000533492 PLB1Q6P1J6 1458 aa25.88■■□□□ 1.73
CPSF1-211ENST00000533492 EEA1Q15075 1411 aa25.87■■□□□ 1.73
CPSF1-211ENST00000533492 FAM9AQ8IZU1 332 aaPredicted RBP25.84■■□□□ 1.73
CPSF1-211ENST00000533492 KDM5BQ9UGL1 1544 aa25.83■■□□□ 1.73
CPSF1-211ENST00000533492 TSPOAP1O95153 1857 aa25.83■■□□□ 1.73
CPSF1-211ENST00000533492 AEBP2Q6ZN18 517 aaPredicted RBP25.81■■□□□ 1.72
CPSF1-211ENST00000533492 P3H3Q8IVL6 736 aa25.78■■□□□ 1.72
CPSF1-211ENST00000533492 ZCCHC11Q5TAX3 1644 aaKnown RBP25.77■■□□□ 1.72
CPSF1-211ENST00000533492 GLI2P10070 1586 aa25.74■■□□□ 1.71
CPSF1-211ENST00000533492 EPRSP07814 1512 aaKnown RBP25.72■■□□□ 1.71
CPSF1-211ENST00000533492 KDM6BO15054 1643 aa25.71■■□□□ 1.71
CPSF1-211ENST00000533492 ABCA8O94911 1581 aa25.71■■□□□ 1.71
CPSF1-211ENST00000533492 CHIC1Q5VXU3 224 aa25.7■■□□□ 1.7
CPSF1-211ENST00000533492 RANGAP1P46060 587 aaPredicted RBP25.69■■□□□ 1.7
CPSF1-211ENST00000533492 WDR7Q9Y4E6 1490 aa25.66■■□□□ 1.7
CPSF1-211ENST00000533492 KCNH8Q96L42 1107 aa25.65■■□□□ 1.7
CPSF1-211ENST00000533492 ARID3CA6NKF2 412 aa25.62■■□□□ 1.69
CPSF1-211ENST00000533492 SAMD9Q5K651 1589 aa25.61■■□□□ 1.69
CPSF1-211ENST00000533492 PPRC1Q5VV67 1664 aaKnown RBP25.61■■□□□ 1.69
CPSF1-211ENST00000533492 MAP3K4Q9Y6R4 1608 aa25.59■■□□□ 1.69
CPSF1-211ENST00000533492 KIF21BO75037 1637 aa25.59■■□□□ 1.69
CPSF1-211ENST00000533492 TEX14Q8IWB6 1497 aa25.58■■□□□ 1.69
CPSF1-211ENST00000533492 EHMT2Q96KQ7 1210 aa25.56■■□□□ 1.68
CPSF1-211ENST00000533492 ATP10BO94823 1461 aa25.54■■□□□ 1.68
CPSF1-211ENST00000533492 UBTFP17480 764 aaKnown RBP25.54■■□□□ 1.68
CPSF1-211ENST00000533492 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.53■■□□□ 1.68
CPSF1-211ENST00000533492 HNRNPUL2Q1KMD3 747 aaKnown RBP25.53■■□□□ 1.68
CPSF1-211ENST00000533492 FHOD3Q2V2M9 1422 aa25.52■■□□□ 1.68
CPSF1-211ENST00000533492 CD109Q6YHK3 1445 aa25.52■■□□□ 1.68
CPSF1-211ENST00000533492 RAPGEF6Q8TEU7 1601 aa25.5■■□□□ 1.67
CPSF1-211ENST00000533492 CFAP43Q8NDM7 1665 aa25.48■■□□□ 1.67
CPSF1-211ENST00000533492 COL17A1Q9UMD9 1497 aaPredicted RBP25.47■■□□□ 1.67
CPSF1-211ENST00000533492 EFCAB5A4FU69 1503 aa25.44■■□□□ 1.66
CPSF1-211ENST00000533492 MAGI3Q5TCQ9 1506 aa25.44■■□□□ 1.66
CPSF1-211ENST00000533492 NUP153P49790 1475 aaKnown RBP25.4■■□□□ 1.66
CPSF1-211ENST00000533492 KDM4FA0A1W2PPD8 638 aa25.38■■□□□ 1.65
CPSF1-211ENST00000533492 PLEKHD1A6NEE1 506 aa25.37■■□□□ 1.65
CPSF1-211ENST00000533492 ABCA9Q8IUA7 1624 aa25.31■■□□□ 1.64
CPSF1-211ENST00000533492 ATP1B4Q9UN42 357 aaPredicted RBP25.31■■□□□ 1.64
CPSF1-211ENST00000533492 PHLDB1Q86UU1 1377 aa25.27■■□□□ 1.64
CPSF1-211ENST00000533492 FMN1Q68DA7 1419 aa25.27■■□□□ 1.64
CPSF1-211ENST00000533492 ARHGAP35Q9NRY4 1499 aa25.26■■□□□ 1.63
CPSF1-211ENST00000533492 ARAP3Q8WWN8 1544 aa25.24■■□□□ 1.63
CPSF1-211ENST00000533492 ADGRL1O94910 1474 aa25.21■■□□□ 1.63
CPSF1-211ENST00000533492 NEO1Q92859 1461 aa25.2■■□□□ 1.62
CPSF1-211ENST00000533492 CDK13Q14004 1512 aaKnown RBP25.19■■□□□ 1.62
CPSF1-211ENST00000533492 CDK11AQ9UQ88 783 aaPredicted RBP25.17■■□□□ 1.62
CPSF1-211ENST00000533492 RAPGEF3O95398 923 aa25.16■■□□□ 1.62
CPSF1-211ENST00000533492 HECW1Q76N89 1606 aa25.15■■□□□ 1.62
CPSF1-211ENST00000533492 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.12■■□□□ 1.61
CPSF1-211ENST00000533492 AKNAQ7Z591 1439 aa25.08■■□□□ 1.61
CPSF1-211ENST00000533492 FANCAO15360 1455 aa25.08■■□□□ 1.6
CPSF1-211ENST00000533492 TTC37Q6PGP7 1564 aa25.06■■□□□ 1.6
CPSF1-211ENST00000533492 DENND4BO75064 1496 aaPredicted RBP25.04■■□□□ 1.6
CPSF1-211ENST00000533492 CFAP74Q9C0B2 1584 aa25.04■■□□□ 1.6
CPSF1-211ENST00000533492 PLCH2O75038 1416 aa25.01■■□□□ 1.59
CPSF1-211ENST00000533492 CLIP1P30622 1438 aa25■■□□□ 1.59
CPSF1-211ENST00000533492 TROQ12816 1431 aaPredicted RBP25■■□□□ 1.59
CPSF1-211ENST00000533492 CASKIN1Q8WXD9 1431 aa24.99■■□□□ 1.59
CPSF1-211ENST00000533492 FRMPD1Q5SYB0 1578 aa24.98■■□□□ 1.59
CPSF1-211ENST00000533492 EFCAB2Q5VUJ9 269 aa24.98■■□□□ 1.59
CPSF1-211ENST00000533492 ARID4BQ4LE39 1312 aaPredicted RBP24.97■■□□□ 1.59
CPSF1-211ENST00000533492 KIF14Q15058 1648 aa24.95■■□□□ 1.58
CPSF1-211ENST00000533492 CCDC18Q5T9S5 1454 aa24.95■■□□□ 1.58
CPSF1-211ENST00000533492 LRRIQ1Q96JM4 1722 aa24.95■■□□□ 1.58
CPSF1-211ENST00000533492 PCF11O94913 1555 aaKnown RBP24.94■■□□□ 1.58
CPSF1-211ENST00000533492 RICTORQ6R327 1708 aa24.94■■□□□ 1.58
CPSF1-211ENST00000533492 SCAPERQ9BY12 1400 aa24.93■■□□□ 1.58
CPSF1-211ENST00000533492 MYO5CQ9NQX4 1742 aa24.92■■□□□ 1.58
CPSF1-211ENST00000533492 FYCO1Q9BQS8 1478 aa24.89■■□□□ 1.57
CPSF1-211ENST00000533492 ARHGAP5Q13017 1502 aa24.86■■□□□ 1.57
CPSF1-211ENST00000533492 ARHGEF40Q8TER5 1519 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms