RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 CARMIL1Q5VZK9 1371 aa22.82■■□□□ 1.24
VPS28-211ENST00000530790 TRHP20396 242 aaPredicted RBP22.82■■□□□ 1.24
VPS28-211ENST00000530790 JPH4Q96JJ6 628 aa22.82■■□□□ 1.24
VPS28-211ENST00000530790 KIAA0586Q9BVV6 1533 aa22.82■■□□□ 1.24
VPS28-211ENST00000530790 RAPGEF2Q9Y4G8 1499 aa22.68■■□□□ 1.22
VPS28-211ENST00000530790 IQGAP2Q13576 1575 aa22.67■■□□□ 1.22
VPS28-211ENST00000530790 CARMIL2Q6F5E8 1435 aa22.6■■□□□ 1.21
VPS28-211ENST00000530790 ADCY10Q96PN6 1610 aa22.57■■□□□ 1.2
VPS28-211ENST00000530790 PTPRGP23470 1445 aa22.53■■□□□ 1.2
VPS28-211ENST00000530790 TNIKQ9UKE5 1360 aa22.52■■□□□ 1.2
VPS28-211ENST00000530790 PRXQ9BXM0 1461 aa22.52■■□□□ 1.2
VPS28-211ENST00000530790 UGGT2Q9NYU1 1516 aa22.52■■□□□ 1.19
VPS28-211ENST00000530790 NPM1P06748 294 aaKnown RBP eCLIP22.51■■□□□ 1.19
VPS28-211ENST00000530790 CTTNBP2Q8WZ74 1663 aa22.51■■□□□ 1.19
VPS28-211ENST00000530790 MAPKBP1O60336 1514 aa22.5■■□□□ 1.19
VPS28-211ENST00000530790 DISP1Q96F81 1524 aa22.5■■□□□ 1.19
VPS28-211ENST00000530790 TTBK1Q5TCY1 1321 aaPredicted RBP22.47■■□□□ 1.19
VPS28-211ENST00000530790 KIAA0556O60303 1618 aa22.46■■□□□ 1.19
VPS28-211ENST00000530790 KIF13AQ9H1H9 1805 aa22.43■■□□□ 1.18
VPS28-211ENST00000530790 EEA1Q15075 1411 aa22.42■■□□□ 1.18
VPS28-211ENST00000530790 ABCC10Q5T3U5 1492 aa22.41■■□□□ 1.18
VPS28-211ENST00000530790 ABCC2Q92887 1545 aa22.41■■□□□ 1.18
VPS28-211ENST00000530790 DIP2BQ9P265 1576 aa22.39■■□□□ 1.18
VPS28-211ENST00000530790 UHRF1BP1LA0JNW5 1464 aa22.39■■□□□ 1.17
VPS28-211ENST00000530790 GOLGA3Q08378 1498 aa22.39■■□□□ 1.17
VPS28-211ENST00000530790 UACAQ9BZF9 1416 aa22.38■■□□□ 1.17
VPS28-211ENST00000530790 CSRNP3Q8WYN3 585 aa22.37■■□□□ 1.17
VPS28-211ENST00000530790 FAM69CQ0P6D2 419 aa22.34■■□□□ 1.17
VPS28-211ENST00000530790 KDM5BQ9UGL1 1544 aa22.28■■□□□ 1.16
VPS28-211ENST00000530790 ASXL2Q76L83 1435 aa22.28■■□□□ 1.16
VPS28-211ENST00000530790 PLB1Q6P1J6 1458 aa22.27■■□□□ 1.16
VPS28-211ENST00000530790 ZCCHC11Q5TAX3 1644 aaKnown RBP22.24■■□□□ 1.15
VPS28-211ENST00000530790 FAM9AQ8IZU1 332 aaPredicted RBP22.24■■□□□ 1.15
VPS28-211ENST00000530790 KIF21BO75037 1637 aa22.22■■□□□ 1.15
VPS28-211ENST00000530790 ABCA8O94911 1581 aa22.21■■□□□ 1.15
VPS28-211ENST00000530790 CHIC1Q5VXU3 224 aa22.21■■□□□ 1.15
VPS28-211ENST00000530790 SAMD9Q5K651 1589 aa22.2■■□□□ 1.14
VPS28-211ENST00000530790 GLI2P10070 1586 aa22.18■■□□□ 1.14
VPS28-211ENST00000530790 TSPOAP1O95153 1857 aa22.15■■□□□ 1.14
VPS28-211ENST00000530790 EPRSP07814 1512 aaKnown RBP22.15■■□□□ 1.14
VPS28-211ENST00000530790 WDR7Q9Y4E6 1490 aa22.14■■□□□ 1.13
VPS28-211ENST00000530790 P3H3Q8IVL6 736 aa22.13■■□□□ 1.13
VPS28-211ENST00000530790 KDM6BO15054 1643 aa22.13■■□□□ 1.13
VPS28-211ENST00000530790 MAP3K4Q9Y6R4 1608 aa22.09■■□□□ 1.13
VPS28-211ENST00000530790 PPRC1Q5VV67 1664 aaKnown RBP22.07■■□□□ 1.12
VPS28-211ENST00000530790 RANGAP1P46060 587 aaPredicted RBP22.07■■□□□ 1.12
VPS28-211ENST00000530790 EFCAB5A4FU69 1503 aa22.06■■□□□ 1.12
VPS28-211ENST00000530790 RAPGEF6Q8TEU7 1601 aa22.05■■□□□ 1.12
VPS28-211ENST00000530790 FHOD3Q2V2M9 1422 aa22.05■■□□□ 1.12
VPS28-211ENST00000530790 TEX14Q8IWB6 1497 aa22.03■■□□□ 1.12
VPS28-211ENST00000530790 ARID3CA6NKF2 412 aa22■■□□□ 1.11
VPS28-211ENST00000530790 ATP10BO94823 1461 aa22■■□□□ 1.11
VPS28-211ENST00000530790 EHMT2Q96KQ7 1210 aa21.99■■□□□ 1.11
VPS28-211ENST00000530790 UBTFP17480 764 aaKnown RBP21.98■■□□□ 1.11
VPS28-211ENST00000530790 CFAP43Q8NDM7 1665 aa21.98■■□□□ 1.11
VPS28-211ENST00000530790 NUP153P49790 1475 aaKnown RBP21.96■■□□□ 1.11
VPS28-211ENST00000530790 KCNH8Q96L42 1107 aa21.95■■□□□ 1.1
VPS28-211ENST00000530790 CD109Q6YHK3 1445 aa21.94■■□□□ 1.1
VPS28-211ENST00000530790 MAGI3Q5TCQ9 1506 aa21.92■■□□□ 1.1
VPS28-211ENST00000530790 AEBP2Q6ZN18 517 aaPredicted RBP21.92■■□□□ 1.1
VPS28-211ENST00000530790 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.9■■□□□ 1.1
VPS28-211ENST00000530790 HNRNPUL2Q1KMD3 747 aaKnown RBP21.9■■□□□ 1.1
VPS28-211ENST00000530790 ARHGAP35Q9NRY4 1499 aa21.86■■□□□ 1.09
VPS28-211ENST00000530790 COL17A1Q9UMD9 1497 aaPredicted RBP21.86■■□□□ 1.09
VPS28-211ENST00000530790 ABCA9Q8IUA7 1624 aa21.86■■□□□ 1.09
VPS28-211ENST00000530790 FMN1Q68DA7 1419 aa21.85■■□□□ 1.09
VPS28-211ENST00000530790 HECW1Q76N89 1606 aa21.8■■□□□ 1.08
VPS28-211ENST00000530790 CDK13Q14004 1512 aaKnown RBP21.78■■□□□ 1.08
VPS28-211ENST00000530790 PLEKHD1A6NEE1 506 aa21.77■■□□□ 1.08
VPS28-211ENST00000530790 ARAP3Q8WWN8 1544 aa21.74■■□□□ 1.07
VPS28-211ENST00000530790 NEO1Q92859 1461 aa21.72■■□□□ 1.07
VPS28-211ENST00000530790 PHLDB1Q86UU1 1377 aa21.72■■□□□ 1.07
VPS28-211ENST00000530790 ATP1B4Q9UN42 357 aaPredicted RBP21.71■■□□□ 1.07
VPS28-211ENST00000530790 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.7■■□□□ 1.067e-7■■□□□ 14.3
VPS28-211ENST00000530790 TTC37Q6PGP7 1564 aa21.69■■□□□ 1.06
VPS28-211ENST00000530790 KDM4FA0A1W2PPD8 638 aa21.67■■□□□ 1.06
VPS28-211ENST00000530790 CFAP74Q9C0B2 1584 aa21.66■■□□□ 1.06
VPS28-211ENST00000530790 ADGRL1O94910 1474 aa21.66■■□□□ 1.06
VPS28-211ENST00000530790 PCF11O94913 1555 aaKnown RBP21.65■■□□□ 1.06
VPS28-211ENST00000530790 CLIP1P30622 1438 aa21.63■■□□□ 1.05
VPS28-211ENST00000530790 CDK11AQ9UQ88 783 aaPredicted RBP21.63■■□□□ 1.05
VPS28-211ENST00000530790 FANCAO15360 1455 aa21.63■■□□□ 1.05
VPS28-211ENST00000530790 CASKIN1Q8WXD9 1431 aa21.63■■□□□ 1.05
VPS28-211ENST00000530790 KIF14Q15058 1648 aa21.62■■□□□ 1.05
VPS28-211ENST00000530790 CCDC18Q5T9S5 1454 aa21.61■■□□□ 1.05
VPS28-211ENST00000530790 LRRIQ1Q96JM4 1722 aa21.6■■□□□ 1.05
VPS28-211ENST00000530790 FRMPD1Q5SYB0 1578 aa21.6■■□□□ 1.05
VPS28-211ENST00000530790 TROQ12816 1431 aaPredicted RBP21.59■■□□□ 1.05
VPS28-211ENST00000530790 FYCO1Q9BQS8 1478 aa21.58■■□□□ 1.05
VPS28-211ENST00000530790 AKNAQ7Z591 1439 aa21.57■■□□□ 1.04
VPS28-211ENST00000530790 RAPGEF3O95398 923 aa21.57■■□□□ 1.04
VPS28-211ENST00000530790 DENND4BO75064 1496 aaPredicted RBP21.56■■□□□ 1.04
VPS28-211ENST00000530790 MYO5CQ9NQX4 1742 aa21.55■■□□□ 1.04
VPS28-211ENST00000530790 PLCH2O75038 1416 aa21.55■■□□□ 1.04
VPS28-211ENST00000530790 RICTORQ6R327 1708 aa21.52■■□□□ 1.04
VPS28-211ENST00000530790 ARHGEF40Q8TER5 1519 aa21.5■■□□□ 1.03
VPS28-211ENST00000530790 ZMYM4Q5VZL5 1548 aa21.48■■□□□ 1.03
VPS28-211ENST00000530790 CEP162Q5TB80 1403 aa21.47■■□□□ 1.03
VPS28-211ENST00000530790 ARHGAP5Q13017 1502 aa21.47■■□□□ 1.03
VPS28-211ENST00000530790 POGZQ7Z3K3 1410 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms