RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 CTTNBP2Q8WZ74 1663 aa29.81■■■□□ 2.36
VPS28-207ENST00000526977 RANGAP1P46060 587 aaPredicted RBP29.81■■■□□ 2.36
VPS28-207ENST00000526977 PCGF6Q9BYE7 350 aa29.78■■■□□ 2.36
VPS28-207ENST00000526977 KIAA0586Q9BVV6 1533 aa29.73■■■□□ 2.35
VPS28-207ENST00000526977 NUP160Q12769 1436 aa29.72■■■□□ 2.35
VPS28-207ENST00000526977 IQGAP2Q13576 1575 aa29.67■■■□□ 2.34
VPS28-207ENST00000526977 CEP170Q5SW79 1584 aa29.67■■■□□ 2.34
VPS28-207ENST00000526977 ARHGAP35Q9NRY4 1499 aa29.66■■■□□ 2.34
VPS28-207ENST00000526977 CHD1O14646 1710 aa29.64■■■□□ 2.34
VPS28-207ENST00000526977 EFCAB5A4FU69 1503 aa29.62■■■□□ 2.33
VPS28-207ENST00000526977 TRIM26Q12899 539 aaPredicted RBP29.62■■■□□ 2.33
VPS28-207ENST00000526977 ARAP1Q96P48 1450 aa29.56■■■□□ 2.32
VPS28-207ENST00000526977 UGGT2Q9NYU1 1516 aa29.56■■■□□ 2.32
VPS28-207ENST00000526977 VPS8Q8N3P4 1428 aa29.54■■■□□ 2.32
VPS28-207ENST00000526977 JPH4Q96JJ6 628 aa29.52■■■□□ 2.32
VPS28-207ENST00000526977 SAMD9Q5K651 1589 aa29.52■■■□□ 2.32
VPS28-207ENST00000526977 P3H3Q8IVL6 736 aa29.51■■■□□ 2.31
VPS28-207ENST00000526977 FHOD3Q2V2M9 1422 aa29.45■■■□□ 2.3
VPS28-207ENST00000526977 DISP1Q96F81 1524 aa29.41■■■□□ 2.3
VPS28-207ENST00000526977 CARMIL2Q6F5E8 1435 aa29.4■■■□□ 2.3
VPS28-207ENST00000526977 OSCARQ8IYS5 282 aa29.39■■■□□ 2.3
VPS28-207ENST00000526977 FMN1Q68DA7 1419 aa29.39■■■□□ 2.3
VPS28-207ENST00000526977 CLASP1Q7Z460 1538 aa29.37■■■□□ 2.29
VPS28-207ENST00000526977 KIAA0556O60303 1618 aa29.36■■■□□ 2.29
VPS28-207ENST00000526977 PPARGC1BQ86YN6 1023 aaKnown RBP29.33■■■□□ 2.29
VPS28-207ENST00000526977 SHROOM2Q13796 1616 aa29.32■■■□□ 2.28
VPS28-207ENST00000526977 PRG4Q92954 1404 aaPredicted RBP29.32■■■□□ 2.28
VPS28-207ENST00000526977 APLP2Q06481 763 aa29.32■■■□□ 2.28
VPS28-207ENST00000526977 CASKIN1Q8WXD9 1431 aa29.25■■■□□ 2.27
VPS28-207ENST00000526977 FYCO1Q9BQS8 1478 aa29.22■■■□□ 2.27
VPS28-207ENST00000526977 HRCP23327 699 aa29.21■■■□□ 2.27
VPS28-207ENST00000526977 PCF11O94913 1555 aaKnown RBP29.19■■■□□ 2.26
VPS28-207ENST00000526977 ATP1B4Q9UN42 357 aaPredicted RBP29.17■■■□□ 2.26
VPS28-207ENST00000526977 TTBK1Q5TCY1 1321 aaPredicted RBP29.15■■■□□ 2.26
VPS28-207ENST00000526977 MAP3K1Q13233 1512 aa29.14■■■□□ 2.25
VPS28-207ENST00000526977 PTPRGP23470 1445 aa29.13■■■□□ 2.25
VPS28-207ENST00000526977 ERCC6L2Q5T890 1561 aa29.08■■■□□ 2.25
VPS28-207ENST00000526977 HECW1Q76N89 1606 aa29.06■■■□□ 2.24
VPS28-207ENST00000526977 TIAM1Q13009 1591 aa29.04■■■□□ 2.24
VPS28-207ENST00000526977 RAPGEF6Q8TEU7 1601 aa29.03■■■□□ 2.24
VPS28-207ENST00000526977 PLB1Q6P1J6 1458 aa29.02■■■□□ 2.24
VPS28-207ENST00000526977 CCDC18Q5T9S5 1454 aa29.01■■■□□ 2.23
VPS28-207ENST00000526977 KANK4Q5T7N3 995 aaPredicted RBP29■■■□□ 2.23
VPS28-207ENST00000526977 ABCA8O94911 1581 aa28.98■■■□□ 2.23
VPS28-207ENST00000526977 EPRSP07814 1512 aaKnown RBP28.97■■■□□ 2.23
VPS28-207ENST00000526977 CFAP43Q8NDM7 1665 aa28.97■■■□□ 2.23
VPS28-207ENST00000526977 NUP153P49790 1475 aaKnown RBP28.97■■■□□ 2.23
VPS28-207ENST00000526977 UACAQ9BZF9 1416 aa28.95■■■□□ 2.23
VPS28-207ENST00000526977 LRRC9Q6ZRR7 1453 aa28.94■■■□□ 2.22
VPS28-207ENST00000526977 LRRIQ1Q96JM4 1722 aa28.92■■■□□ 2.22
VPS28-207ENST00000526977 CDK11AQ9UQ88 783 aaPredicted RBP28.87■■■□□ 2.21
VPS28-207ENST00000526977 MTUS2Q5JR59 1369 aa28.87■■■□□ 2.21
VPS28-207ENST00000526977 ARID3CA6NKF2 412 aa28.86■■■□□ 2.21
VPS28-207ENST00000526977 CDK13Q14004 1512 aaKnown RBP28.86■■■□□ 2.21
VPS28-207ENST00000526977 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.86■■■□□ 2.21
VPS28-207ENST00000526977 HNRNPUL2Q1KMD3 747 aaKnown RBP28.86■■■□□ 2.21
VPS28-207ENST00000526977 ABCC2Q92887 1545 aa28.84■■■□□ 2.21
VPS28-207ENST00000526977 UHRF1BP1LA0JNW5 1464 aa28.83■■■□□ 2.21
VPS28-207ENST00000526977 ATP10BO94823 1461 aa28.81■■■□□ 2.2
VPS28-207ENST00000526977 ARHGEF11O15085 1522 aa28.8■■■□□ 2.2
VPS28-207ENST00000526977 EHBP1L1Q8N3D4 1523 aa28.78■■■□□ 2.2
VPS28-207ENST00000526977 MAGI3Q5TCQ9 1506 aa28.74■■■□□ 2.19
VPS28-207ENST00000526977 PLEKHD1A6NEE1 506 aa28.74■■■□□ 2.19
VPS28-207ENST00000526977 KDM5BQ9UGL1 1544 aa28.69■■■□□ 2.18
VPS28-207ENST00000526977 TROQ12816 1431 aaPredicted RBP28.69■■■□□ 2.18
VPS28-207ENST00000526977 SUPT6HQ7KZ85 1726 aaKnown RBP28.67■■■□□ 2.18
VPS28-207ENST00000526977 RIMBP3CA6NJZ7 1639 aa28.66■■■□□ 2.18
VPS28-207ENST00000526977 RIMBP3BA6NNM3 1639 aa28.66■■■□□ 2.18
VPS28-207ENST00000526977 ADCY10Q96PN6 1610 aa28.66■■■□□ 2.18
VPS28-207ENST00000526977 RIMBP3Q9UFD9 1639 aa28.66■■■□□ 2.18
VPS28-207ENST00000526977 NCOA2Q15596 1464 aa28.65■■■□□ 2.18
VPS28-207ENST00000526977 PHLDB1Q86UU1 1377 aa28.64■■■□□ 2.17
VPS28-207ENST00000526977 RRBP1Q9P2E9 1410 aaKnown RBP28.6■■■□□ 2.17
VPS28-207ENST00000526977 ZCCHC11Q5TAX3 1644 aaKnown RBP28.59■■■□□ 2.17
VPS28-207ENST00000526977 NPM1P06748 294 aaKnown RBP eCLIP28.59■■■□□ 2.17
VPS28-207ENST00000526977 ZEB1P37275 1124 aaPredicted RBP28.59■■■□□ 2.17
VPS28-207ENST00000526977 CYB5RLQ6IPT4 315 aa28.59■■■□□ 2.17
VPS28-207ENST00000526977 CCNB3Q8WWL7 1395 aa28.54■■■□□ 2.16
VPS28-207ENST00000526977 MYOM3Q5VTT5 1437 aa28.53■■■□□ 2.16
VPS28-207ENST00000526977 KIF14Q15058 1648 aa28.49■■■□□ 2.15
VPS28-207ENST00000526977 FGD6Q6ZV73 1430 aa28.48■■■□□ 2.15
VPS28-207ENST00000526977 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.45■■■□□ 2.143e-6■■□□□ 12.6
VPS28-207ENST00000526977 MIA2Q96PC5 1412 aa28.45■■■□□ 2.14
VPS28-207ENST00000526977 ABCC10Q5T3U5 1492 aa28.43■■■□□ 2.14
VPS28-207ENST00000526977 KCNH8Q96L42 1107 aa28.42■■■□□ 2.14
VPS28-207ENST00000526977 WDR7Q9Y4E6 1490 aa28.42■■■□□ 2.14
VPS28-207ENST00000526977 ASXL2Q76L83 1435 aa28.41■■■□□ 2.14
VPS28-207ENST00000526977 FAM50AQ14320 339 aaKnown RBP28.4■■■□□ 2.14
VPS28-207ENST00000526977 GPATCH8Q9UKJ3 1502 aaKnown RBP28.39■■■□□ 2.14
VPS28-207ENST00000526977 CCER1Q8TC90 406 aaPredicted RBP28.39■■■□□ 2.14
VPS28-207ENST00000526977 CFDP1Q9UEE9 299 aaPredicted RBP28.36■■■□□ 2.13
VPS28-207ENST00000526977 ITSN2Q9NZM3 1697 aa28.35■■■□□ 2.13
VPS28-207ENST00000526977 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.34■■■□□ 2.137e-7■■□□□ 14.3
VPS28-207ENST00000526977 TCOF1Q13428 1488 aaKnown RBP28.33■■■□□ 2.13
VPS28-207ENST00000526977 PTPN23Q9H3S7 1636 aa28.33■■■□□ 2.13
VPS28-207ENST00000526977 MAPKBP1O60336 1514 aa28.29■■■□□ 2.12
VPS28-207ENST00000526977 CDC42BPAQ5VT25 1732 aa28.28■■■□□ 2.12
VPS28-207ENST00000526977 TTC37Q6PGP7 1564 aa28.27■■■□□ 2.12
VPS28-207ENST00000526977 ITGAEP38570 1179 aa28.26■■■□□ 2.11
VPS28-207ENST00000526977 PLCH2O75038 1416 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms