RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 JPH4Q96JJ6 628 aa17.55■□□□□ 0.4
VPS28-204ENST00000526054 KIF13AQ9H1H9 1805 aa17.54■□□□□ 0.4
VPS28-204ENST00000526054 KIAA0586Q9BVV6 1533 aa17.5■□□□□ 0.39
VPS28-204ENST00000526054 IGF1RP08069 1367 aa17.5■□□□□ 0.39
VPS28-204ENST00000526054 ADCY10Q96PN6 1610 aa17.47■□□□□ 0.39
VPS28-204ENST00000526054 MAPKBP1O60336 1514 aa17.45■□□□□ 0.38
VPS28-204ENST00000526054 DIP2BQ9P265 1576 aa17.41■□□□□ 0.38
VPS28-204ENST00000526054 CARMIL1Q5VZK9 1371 aa17.4■□□□□ 0.38
VPS28-204ENST00000526054 ABCC10Q5T3U5 1492 aa17.4■□□□□ 0.38
VPS28-204ENST00000526054 NPM1P06748 294 aaKnown RBP eCLIP17.39■□□□□ 0.37
VPS28-204ENST00000526054 IQGAP2Q13576 1575 aa17.39■□□□□ 0.37
VPS28-204ENST00000526054 AEBP2Q6ZN18 517 aaPredicted RBP17.37■□□□□ 0.37
VPS28-204ENST00000526054 FAM69CQ0P6D2 419 aa17.34■□□□□ 0.37
VPS28-204ENST00000526054 CARMIL2Q6F5E8 1435 aa17.34■□□□□ 0.37
VPS28-204ENST00000526054 PTPRGP23470 1445 aa17.32■□□□□ 0.36
VPS28-204ENST00000526054 TNIKQ9UKE5 1360 aa17.3■□□□□ 0.36
VPS28-204ENST00000526054 TSPOAP1O95153 1857 aa17.29■□□□□ 0.36
VPS28-204ENST00000526054 RAPGEF2Q9Y4G8 1499 aa17.29■□□□□ 0.36
VPS28-204ENST00000526054 TTBK1Q5TCY1 1321 aaPredicted RBP17.28■□□□□ 0.36
VPS28-204ENST00000526054 ABCC2Q92887 1545 aa17.28■□□□□ 0.36
VPS28-204ENST00000526054 KDM6BO15054 1643 aa17.27■□□□□ 0.36
VPS28-204ENST00000526054 DISP1Q96F81 1524 aa17.26■□□□□ 0.35
VPS28-204ENST00000526054 UGGT2Q9NYU1 1516 aa17.25■□□□□ 0.35
VPS28-204ENST00000526054 CTTNBP2Q8WZ74 1663 aa17.24■□□□□ 0.35
VPS28-204ENST00000526054 KIAA0556O60303 1618 aa17.24■□□□□ 0.35
VPS28-204ENST00000526054 UHRF1BP1LA0JNW5 1464 aa17.24■□□□□ 0.35
VPS28-204ENST00000526054 UACAQ9BZF9 1416 aa17.21■□□□□ 0.35
VPS28-204ENST00000526054 ASXL2Q76L83 1435 aa17.21■□□□□ 0.34
VPS28-204ENST00000526054 PLB1Q6P1J6 1458 aa17.2■□□□□ 0.34
VPS28-204ENST00000526054 GLI2P10070 1586 aa17.18■□□□□ 0.34
VPS28-204ENST00000526054 ZCCHC11Q5TAX3 1644 aaKnown RBP17.17■□□□□ 0.34
VPS28-204ENST00000526054 PPRC1Q5VV67 1664 aaKnown RBP17.16■□□□□ 0.34
VPS28-204ENST00000526054 KDM5BQ9UGL1 1544 aa17.16■□□□□ 0.34
VPS28-204ENST00000526054 MAP3K4Q9Y6R4 1608 aa17.12■□□□□ 0.33
VPS28-204ENST00000526054 GOLGA3Q08378 1498 aa17.11■□□□□ 0.33
VPS28-204ENST00000526054 EPRSP07814 1512 aaKnown RBP17.11■□□□□ 0.33
VPS28-204ENST00000526054 PRXQ9BXM0 1461 aa17.1■□□□□ 0.33
VPS28-204ENST00000526054 WDR7Q9Y4E6 1490 aa17.06■□□□□ 0.32
VPS28-204ENST00000526054 TEX14Q8IWB6 1497 aa17.05■□□□□ 0.32
VPS28-204ENST00000526054 ABCA8O94911 1581 aa17.05■□□□□ 0.32
VPS28-204ENST00000526054 CFAP43Q8NDM7 1665 aa17■□□□□ 0.31
VPS28-204ENST00000526054 KDM4FA0A1W2PPD8 638 aa16.99■□□□□ 0.31
VPS28-204ENST00000526054 COL17A1Q9UMD9 1497 aaPredicted RBP16.98■□□□□ 0.31
VPS28-204ENST00000526054 CHIC1Q5VXU3 224 aa16.96■□□□□ 0.31
VPS28-204ENST00000526054 SAMD9Q5K651 1589 aa16.95■□□□□ 0.3
VPS28-204ENST00000526054 ADGRL1O94910 1474 aa16.94■□□□□ 0.3
VPS28-204ENST00000526054 MAGI3Q5TCQ9 1506 aa16.93■□□□□ 0.3
VPS28-204ENST00000526054 CD109Q6YHK3 1445 aa16.92■□□□□ 0.3
VPS28-204ENST00000526054 EEA1Q15075 1411 aa16.9■□□□□ 0.3
VPS28-204ENST00000526054 CSRNP3Q8WYN3 585 aa16.9■□□□□ 0.3
VPS28-204ENST00000526054 RAPGEF6Q8TEU7 1601 aa16.89■□□□□ 0.29
VPS28-204ENST00000526054 FAM9AQ8IZU1 332 aaPredicted RBP16.89■□□□□ 0.29
VPS28-204ENST00000526054 KCNH8Q96L42 1107 aa16.89■□□□□ 0.29
VPS28-204ENST00000526054 P3H3Q8IVL6 736 aa16.88■□□□□ 0.29
VPS28-204ENST00000526054 ATP10BO94823 1461 aa16.86■□□□□ 0.29
VPS28-204ENST00000526054 ARID3CA6NKF2 412 aa16.86■□□□□ 0.29
VPS28-204ENST00000526054 ABCA9Q8IUA7 1624 aa16.85■□□□□ 0.29
VPS28-204ENST00000526054 KIF21BO75037 1637 aa16.81■□□□□ 0.28
VPS28-204ENST00000526054 NUP153P49790 1475 aaKnown RBP16.8■□□□□ 0.28
VPS28-204ENST00000526054 FHOD3Q2V2M9 1422 aa16.79■□□□□ 0.28
VPS28-204ENST00000526054 ARAP3Q8WWN8 1544 aa16.79■□□□□ 0.28
VPS28-204ENST00000526054 EFCAB5A4FU69 1503 aa16.78■□□□□ 0.28
VPS28-204ENST00000526054 RANGAP1P46060 587 aaPredicted RBP16.77■□□□□ 0.28
VPS28-204ENST00000526054 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.75■□□□□ 0.27
VPS28-204ENST00000526054 HNRNPUL2Q1KMD3 747 aaKnown RBP16.75■□□□□ 0.27
VPS28-204ENST00000526054 NEO1Q92859 1461 aa16.73■□□□□ 0.27
VPS28-204ENST00000526054 HECW2Q9P2P5 1572 aa16.73■□□□□ 0.27
VPS28-204ENST00000526054 PHLDB1Q86UU1 1377 aa16.73■□□□□ 0.27
VPS28-204ENST00000526054 FRMPD1Q5SYB0 1578 aa16.7■□□□□ 0.26
VPS28-204ENST00000526054 CFAP74Q9C0B2 1584 aa16.68■□□□□ 0.26
VPS28-204ENST00000526054 TTC37Q6PGP7 1564 aa16.66■□□□□ 0.26
VPS28-204ENST00000526054 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.65■□□□□ 0.267e-7■■□□□ 14.3
VPS28-204ENST00000526054 CDK13Q14004 1512 aaKnown RBP16.65■□□□□ 0.26
VPS28-204ENST00000526054 PLEKHD1A6NEE1 506 aa16.64■□□□□ 0.25
VPS28-204ENST00000526054 RAPGEF3O95398 923 aa16.64■□□□□ 0.25
VPS28-204ENST00000526054 RICTORQ6R327 1708 aa16.64■□□□□ 0.25
VPS28-204ENST00000526054 ARHGEF40Q8TER5 1519 aa16.64■□□□□ 0.25
VPS28-204ENST00000526054 HECW1Q76N89 1606 aa16.63■□□□□ 0.25
VPS28-204ENST00000526054 ADAMTSL3P82987 1691 aa16.63■□□□□ 0.25
VPS28-204ENST00000526054 FANCAO15360 1455 aa16.62■□□□□ 0.25
VPS28-204ENST00000526054 BCORL1Q5H9F3 1711 aa16.61■□□□□ 0.25
VPS28-204ENST00000526054 DENND4BO75064 1496 aaPredicted RBP16.61■□□□□ 0.25
VPS28-204ENST00000526054 UBTFP17480 764 aaKnown RBP16.59■□□□□ 0.25
VPS28-204ENST00000526054 EHMT2Q96KQ7 1210 aa16.59■□□□□ 0.25
VPS28-204ENST00000526054 FMN1Q68DA7 1419 aa16.59■□□□□ 0.25
VPS28-204ENST00000526054 AKNAQ7Z591 1439 aa16.59■□□□□ 0.25
VPS28-204ENST00000526054 ARHGAP35Q9NRY4 1499 aa16.58■□□□□ 0.24
VPS28-204ENST00000526054 ZMYM4Q5VZL5 1548 aa16.58■□□□□ 0.24
VPS28-204ENST00000526054 MADDQ8WXG6 1647 aa16.58■□□□□ 0.24
VPS28-204ENST00000526054 PTPRMP28827 1452 aa16.57■□□□□ 0.24
VPS28-204ENST00000526054 MYO5CQ9NQX4 1742 aa16.56■□□□□ 0.24
VPS28-204ENST00000526054 ARID4BQ4LE39 1312 aaPredicted RBP16.54■□□□□ 0.24
VPS28-204ENST00000526054 ZFYVE16Q7Z3T8 1539 aa16.54■□□□□ 0.24
VPS28-204ENST00000526054 KIF14Q15058 1648 aa16.53■□□□□ 0.24
VPS28-204ENST00000526054 RIMS1Q86UR5 1692 aaKnown RBP16.53■□□□□ 0.24
VPS28-204ENST00000526054 ATP1B4Q9UN42 357 aaPredicted RBP16.52■□□□□ 0.24
VPS28-204ENST00000526054 LRRIQ1Q96JM4 1722 aa16.51■□□□□ 0.23
VPS28-204ENST00000526054 PLCH2O75038 1416 aa16.51■□□□□ 0.23
VPS28-204ENST00000526054 ILDR1Q86SU0 546 aaPredicted RBP16.5■□□□□ 0.23
VPS28-204ENST00000526054 POGZQ7Z3K3 1410 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms