RNA–Protein interactions for RNA: ENST00000525435.1

CCS-202, Transcript of copper chaperone for superoxide dismutase, humanhuman

TSL 2

Gene CCS, Length 798 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-202ENST00000525435 ARHGEF11O15085 1522 aa20.4■□□□□ 0.86
CCS-202ENST00000525435 RIMBP3CA6NJZ7 1639 aa20.38■□□□□ 0.85
CCS-202ENST00000525435 RIMBP3BA6NNM3 1639 aa20.38■□□□□ 0.85
CCS-202ENST00000525435 RIMBP3Q9UFD9 1639 aa20.38■□□□□ 0.85
CCS-202ENST00000525435 PRG4Q92954 1404 aaPredicted RBP20.34■□□□□ 0.85
CCS-202ENST00000525435 SHROOM2Q13796 1616 aa20.34■□□□□ 0.85
CCS-202ENST00000525435 CYB5RLQ6IPT4 315 aa20.3■□□□□ 0.84
CCS-202ENST00000525435 KIF21BO75037 1637 aa20.3■□□□□ 0.84
CCS-202ENST00000525435 IQGAP2Q13576 1575 aa20.29■□□□□ 0.84
CCS-202ENST00000525435 CARMIL2Q6F5E8 1435 aa20.27■□□□□ 0.84
CCS-202ENST00000525435 UBTFP17480 764 aaKnown RBP20.25■□□□□ 0.83
CCS-202ENST00000525435 GOLGA3Q08378 1498 aa20.24■□□□□ 0.83
CCS-202ENST00000525435 ARAP1Q96P48 1450 aa20.24■□□□□ 0.83
CCS-202ENST00000525435 UGGT2Q9NYU1 1516 aa20.24■□□□□ 0.83
CCS-202ENST00000525435 ERCC6L2Q5T890 1561 aa20.21■□□□□ 0.83
CCS-202ENST00000525435 TNIKQ9UKE5 1360 aa20.19■□□□□ 0.82
CCS-202ENST00000525435 PTPRGP23470 1445 aa20.17■□□□□ 0.82
CCS-202ENST00000525435 DISP1Q96F81 1524 aa20.17■□□□□ 0.82
CCS-202ENST00000525435 CTTNBP2Q8WZ74 1663 aa20.16■□□□□ 0.82
CCS-202ENST00000525435 EHMT2Q96KQ7 1210 aa20.13■□□□□ 0.81
CCS-202ENST00000525435 KIAA0556O60303 1618 aa20.07■□□□□ 0.8
CCS-202ENST00000525435 RANGAP1P46060 587 aaPredicted RBP20.03■□□□□ 0.8
CCS-202ENST00000525435 P3H3Q8IVL6 736 aa20.03■□□□□ 0.8
CCS-202ENST00000525435 NPM1P06748 294 aaKnown RBP eCLIP20.02■□□□□ 0.8
CCS-202ENST00000525435 EFCAB5A4FU69 1503 aa20.02■□□□□ 0.79
CCS-202ENST00000525435 UACAQ9BZF9 1416 aa20.02■□□□□ 0.79
CCS-202ENST00000525435 TTBK1Q5TCY1 1321 aaPredicted RBP20.02■□□□□ 0.79
CCS-202ENST00000525435 SAMD9Q5K651 1589 aa20■□□□□ 0.79
CCS-202ENST00000525435 UHRF1BP1LA0JNW5 1464 aa19.99■□□□□ 0.79
CCS-202ENST00000525435 LOC105371045A0A1W2PR82 267 aa19.98■□□□□ 0.79
CCS-202ENST00000525435 ARHGAP35Q9NRY4 1499 aa19.93■□□□□ 0.78
CCS-202ENST00000525435 FHOD3Q2V2M9 1422 aa19.92■□□□□ 0.78
CCS-202ENST00000525435 ABCC2Q92887 1545 aa19.92■□□□□ 0.78
CCS-202ENST00000525435 CLIP1P30622 1438 aa19.9■□□□□ 0.78
CCS-202ENST00000525435 PLB1Q6P1J6 1458 aa19.9■□□□□ 0.78
CCS-202ENST00000525435 ADCY10Q96PN6 1610 aa19.9■□□□□ 0.78
CCS-202ENST00000525435 FMN1Q68DA7 1419 aa19.89■□□□□ 0.77
CCS-202ENST00000525435 ABCA8O94911 1581 aa19.88■□□□□ 0.77
CCS-202ENST00000525435 KDM5BQ9UGL1 1544 aa19.86■□□□□ 0.77
CCS-202ENST00000525435 TRHP20396 242 aaPredicted RBP19.85■□□□□ 0.77
CCS-202ENST00000525435 CEP162Q5TB80 1403 aa19.83■□□□□ 0.76
CCS-202ENST00000525435 MAPKBP1O60336 1514 aa19.81■□□□□ 0.76
CCS-202ENST00000525435 ATP10BO94823 1461 aa19.78■□□□□ 0.76
CCS-202ENST00000525435 RAPGEF6Q8TEU7 1601 aa19.77■□□□□ 0.76
CCS-202ENST00000525435 ASXL2Q76L83 1435 aa19.76■□□□□ 0.75
CCS-202ENST00000525435 NUP153P49790 1475 aaKnown RBP19.76■□□□□ 0.75
CCS-202ENST00000525435 CASKIN1Q8WXD9 1431 aa19.74■□□□□ 0.75
CCS-202ENST00000525435 ABCC10Q5T3U5 1492 aa19.73■□□□□ 0.75
CCS-202ENST00000525435 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.73■□□□□ 0.75
CCS-202ENST00000525435 HNRNPUL2Q1KMD3 747 aaKnown RBP19.73■□□□□ 0.75
CCS-202ENST00000525435 PLEKHD1A6NEE1 506 aa19.72■□□□□ 0.75
CCS-202ENST00000525435 FAM69CQ0P6D2 419 aa19.72■□□□□ 0.75
CCS-202ENST00000525435 ATP1B4Q9UN42 357 aaPredicted RBP19.72■□□□□ 0.75
CCS-202ENST00000525435 CDK11AQ9UQ88 783 aaPredicted RBP19.71■□□□□ 0.75
CCS-202ENST00000525435 ZCCHC11Q5TAX3 1644 aaKnown RBP19.7■□□□□ 0.74
CCS-202ENST00000525435 ARID3CA6NKF2 412 aa19.7■□□□□ 0.74
CCS-202ENST00000525435 WDR7Q9Y4E6 1490 aa19.68■□□□□ 0.74
CCS-202ENST00000525435 EPRSP07814 1512 aaKnown RBP19.66■□□□□ 0.74
CCS-202ENST00000525435 HECW1Q76N89 1606 aa19.65■□□□□ 0.74
CCS-202ENST00000525435 FYCO1Q9BQS8 1478 aa19.65■□□□□ 0.74
CCS-202ENST00000525435 KCNH8Q96L42 1107 aa19.64■□□□□ 0.73
CCS-202ENST00000525435 GLI2P10070 1586 aa19.61■□□□□ 0.73
CCS-202ENST00000525435 CCDC18Q5T9S5 1454 aa19.61■□□□□ 0.73
CCS-202ENST00000525435 DIP2BQ9P265 1576 aa19.61■□□□□ 0.73
CCS-202ENST00000525435 VPS8Q8N3P4 1428 aa19.6■□□□□ 0.73
CCS-202ENST00000525435 PCF11O94913 1555 aaKnown RBP19.57■□□□□ 0.72
CCS-202ENST00000525435 CDK13Q14004 1512 aaKnown RBP19.56■□□□□ 0.72
CCS-202ENST00000525435 KIF13AQ9H1H9 1805 aa19.55■□□□□ 0.72
CCS-202ENST00000525435 TROQ12816 1431 aaPredicted RBP19.53■□□□□ 0.72
CCS-202ENST00000525435 CD109Q6YHK3 1445 aa19.52■□□□□ 0.72
CCS-202ENST00000525435 MAGI3Q5TCQ9 1506 aa19.47■□□□□ 0.71
CCS-202ENST00000525435 APLP2Q06481 763 aa19.47■□□□□ 0.71
CCS-202ENST00000525435 TEX14Q8IWB6 1497 aa19.46■□□□□ 0.71
CCS-202ENST00000525435 MAP3K1Q13233 1512 aa19.46■□□□□ 0.71
CCS-202ENST00000525435 PHLDB1Q86UU1 1377 aa19.45■□□□□ 0.7
CCS-202ENST00000525435 ABCA9Q8IUA7 1624 aa19.45■□□□□ 0.7
CCS-202ENST00000525435 MAP3K4Q9Y6R4 1608 aa19.45■□□□□ 0.7
CCS-202ENST00000525435 MTUS2Q5JR59 1369 aa19.44■□□□□ 0.7
CCS-202ENST00000525435 CFAP43Q8NDM7 1665 aa19.43■□□□□ 0.7
CCS-202ENST00000525435 LRRIQ1Q96JM4 1722 aa19.42■□□□□ 0.7
CCS-202ENST00000525435 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.41■□□□□ 0.7
CCS-202ENST00000525435 PLCH2O75038 1416 aa19.41■□□□□ 0.7
CCS-202ENST00000525435 EFCAB2Q5VUJ9 269 aa19.38■□□□□ 0.69
CCS-202ENST00000525435 KIF14Q15058 1648 aa19.37■□□□□ 0.69
CCS-202ENST00000525435 TIAM1Q13009 1591 aa19.36■□□□□ 0.69
CCS-202ENST00000525435 NEO1Q92859 1461 aa19.36■□□□□ 0.69
CCS-202ENST00000525435 LRRC9Q6ZRR7 1453 aa19.35■□□□□ 0.69
CCS-202ENST00000525435 EHBP1L1Q8N3D4 1523 aa19.35■□□□□ 0.69
CCS-202ENST00000525435 ARAP3Q8WWN8 1544 aa19.35■□□□□ 0.69
CCS-202ENST00000525435 KANK4Q5T7N3 995 aaPredicted RBP19.34■□□□□ 0.69
CCS-202ENST00000525435 TSPOAP1O95153 1857 aa19.34■□□□□ 0.69
CCS-202ENST00000525435 PPRC1Q5VV67 1664 aaKnown RBP19.33■□□□□ 0.69
CCS-202ENST00000525435 TTC37Q6PGP7 1564 aa19.32■□□□□ 0.68
CCS-202ENST00000525435 CCNB3Q8WWL7 1395 aa19.32■□□□□ 0.68
CCS-202ENST00000525435 FANCAO15360 1455 aa19.31■□□□□ 0.68
CCS-202ENST00000525435 AKNAQ7Z591 1439 aa19.29■□□□□ 0.68
CCS-202ENST00000525435 GPATCH8Q9UKJ3 1502 aaKnown RBP19.29■□□□□ 0.68
CCS-202ENST00000525435 CFDP1Q9UEE9 299 aaPredicted RBP19.28■□□□□ 0.68
CCS-202ENST00000525435 COL17A1Q9UMD9 1497 aaPredicted RBP19.27■□□□□ 0.67
CCS-202ENST00000525435 NCOA2Q15596 1464 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms