RNA–Protein interactions for RNA: ENST00000524523.1

CTR9-202, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 5

Gene CTR9, Length 902 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-202ENST00000524523 PEG3Q9GZU2 1588 aa12.64□□□□□ -0.39
CTR9-202ENST00000524523 HAX1O00165 279 aa12.6□□□□□ -0.39
CTR9-202ENST00000524523 TOP2AP11388 1531 aaKnown RBP12.58□□□□□ -0.4
CTR9-202ENST00000524523 NPM1P06748 294 aaKnown RBP eCLIP12.58□□□□□ -0.4
CTR9-202ENST00000524523 WIZO95785 1651 aa12.57□□□□□ -0.4
CTR9-202ENST00000524523 VASPP50552 380 aaPredicted RBP12.57□□□□□ -0.4
CTR9-202ENST00000524523 ZBTB47Q9UFB7 747 aaPredicted RBP12.55□□□□□ -0.4
CTR9-202ENST00000524523 MNX1P50219 401 aaPredicted RBP12.54□□□□□ -0.4
CTR9-202ENST00000524523 SMARCA2P51531 1590 aa12.53□□□□□ -0.4
CTR9-202ENST00000524523 C19orf67A6NJJ6 358 aa12.5□□□□□ -0.41
CTR9-202ENST00000524523 ATAD2BQ9ULI0 1458 aa12.5□□□□□ -0.41
CTR9-202ENST00000524523 NCAPD3P42695 1498 aa12.46□□□□□ -0.42
CTR9-202ENST00000524523 CD44P16070 742 aaKnown RBP12.45□□□□□ -0.42
CTR9-202ENST00000524523 CCDC88BA6NC98 1476 aa12.45□□□□□ -0.42
CTR9-202ENST00000524523 KLHL34Q8N239 644 aa12.44□□□□□ -0.42
CTR9-202ENST00000524523 PAK3O75914 559 aaPredicted RBP12.42□□□□□ -0.42
CTR9-202ENST00000524523 BAZ1BQ9UIG0 1483 aaKnown RBP12.4□□□□□ -0.42
CTR9-202ENST00000524523 EVX2Q03828 476 aa12.4□□□□□ -0.42
CTR9-202ENST00000524523 EIF4G1Q04637 1599 aaKnown RBP12.39□□□□□ -0.43
CTR9-202ENST00000524523 HMGXB3Q12766 1538 aa12.39□□□□□ -0.43
CTR9-202ENST00000524523 TRIM41Q8WV44 630 aa12.39□□□□□ -0.43
CTR9-202ENST00000524523 IFNLR1Q8IU57 520 aaPredicted RBP12.37□□□□□ -0.43
CTR9-202ENST00000524523 ZRANB1Q9UGI0 708 aa12.37□□□□□ -0.43
CTR9-202ENST00000524523 SP7Q8TDD2 431 aaPredicted RBP12.36□□□□□ -0.43
CTR9-202ENST00000524523 NUBP1P53384 320 aa12.32□□□□□ -0.44
CTR9-202ENST00000524523 TSPYL2Q9H2G4 693 aaPredicted RBP12.32□□□□□ -0.44
CTR9-202ENST00000524523 RASEFQ8IZ41 740 aa12.3□□□□□ -0.44
CTR9-202ENST00000524523 SPOCK2Q92563 424 aa12.29□□□□□ -0.44
CTR9-202ENST00000524523 ZNF579Q8NAF0 562 aaKnown RBP12.28□□□□□ -0.44
CTR9-202ENST00000524523 FAM212AQ96EL1 285 aa12.28□□□□□ -0.44
CTR9-202ENST00000524523 CLCN6P51797 869 aa12.25□□□□□ -0.45
CTR9-202ENST00000524523 DCAF8Q5TAQ9 597 aa12.23□□□□□ -0.45
CTR9-202ENST00000524523 CCDC61Q9Y6R9 512 aa12.22□□□□□ -0.45
CTR9-202ENST00000524523 GABBR2O75899 941 aa12.2□□□□□ -0.46
CTR9-202ENST00000524523 GSE1Q14687 1217 aa12.2□□□□□ -0.46
CTR9-202ENST00000524523 EEA1Q15075 1411 aa12.2□□□□□ -0.46
CTR9-202ENST00000524523 PHF12Q96QT6 1004 aa12.19□□□□□ -0.46
CTR9-202ENST00000524523 CFTRP13569 1480 aa12.17□□□□□ -0.46
CTR9-202ENST00000524523 WRNQ14191 1432 aaPredicted RBP eCLIP12.17□□□□□ -0.46
CTR9-202ENST00000524523 CIZ1Q9ULV3 898 aaPredicted RBP12.14□□□□□ -0.47
CTR9-202ENST00000524523 CC2D2AQ9P2K1 1620 aa12.14□□□□□ -0.47
CTR9-202ENST00000524523 CADPSQ9ULU8 1353 aa12.11□□□□□ -0.47
CTR9-202ENST00000524523 KIF12Q96FN5 646 aa12.11□□□□□ -0.47
CTR9-202ENST00000524523 LOC105371045A0A1W2PR82 267 aa12.09□□□□□ -0.47
CTR9-202ENST00000524523 ABCC8Q09428 1581 aa12.08□□□□□ -0.48
CTR9-202ENST00000524523 MAP3K13O43283 966 aa12.07□□□□□ -0.48
CTR9-202ENST00000524523 GALR2O43603 387 aaPredicted RBP12.07□□□□□ -0.48
CTR9-202ENST00000524523 PYGBP11216 843 aa12.07□□□□□ -0.48
CTR9-202ENST00000524523 SGIP1Q9BQI5 828 aa12.06□□□□□ -0.48
CTR9-202ENST00000524523 MS4A3Q96HJ5 214 aa12.05□□□□□ -0.48
CTR9-202ENST00000524523 PCDHB13Q9Y5F0 798 aa12.04□□□□□ -0.48
CTR9-202ENST00000524523 TOP2BQ02880 1626 aa12.03□□□□□ -0.48
CTR9-202ENST00000524523 CHRM1P11229 460 aaPredicted RBP12.02□□□□□ -0.49
CTR9-202ENST00000524523 DCBLD2Q96PD2 775 aa12.02□□□□□ -0.49
CTR9-202ENST00000524523 BIVM-ERCC5R4GMW8 1640 aa11.99□□□□□ -0.49
CTR9-202ENST00000524523 SYNJ1O43426 1573 aa11.98□□□□□ -0.49
CTR9-202ENST00000524523 FAM9AQ8IZU1 332 aaPredicted RBP11.98□□□□□ -0.49
CTR9-202ENST00000524523 SOGA1O94964 1423 aa11.97□□□□□ -0.49
CTR9-202ENST00000524523 TNIKQ9UKE5 1360 aa11.96□□□□□ -0.49
CTR9-202ENST00000524523 IFNL1Q8IU54 200 aa11.96□□□□□ -0.49
CTR9-202ENST00000524523 PRDM2Q13029 1718 aa11.96□□□□□ -0.49
CTR9-202ENST00000524523 ZNF467Q7Z7K2 595 aaPredicted RBP11.95□□□□□ -0.5
CTR9-202ENST00000524523 LAMC3Q9Y6N6 1575 aa11.94□□□□□ -0.5
CTR9-202ENST00000524523 CEP164Q9UPV0 1460 aa11.92□□□□□ -0.5
CTR9-202ENST00000524523 CUX1P39880 1505 aa11.91□□□□□ -0.5
CTR9-202ENST00000524523 PCDHB8Q9UN66 801 aa11.91□□□□□ -0.5
CTR9-202ENST00000524523 FANCD2Q9BXW9 1451 aa11.9□□□□□ -0.5
CTR9-202ENST00000524523 TIE1P35590 1138 aa11.9□□□□□ -0.5
CTR9-202ENST00000524523 PDS5BQ9NTI5 1447 aa11.9□□□□□ -0.5
CTR9-202ENST00000524523 GOLGA3Q08378 1498 aa11.89□□□□□ -0.51
CTR9-202ENST00000524523 KIF27Q86VH2 1401 aa11.89□□□□□ -0.51
CTR9-202ENST00000524523 POTEIP0CG38 1075 aa11.89□□□□□ -0.51
CTR9-202ENST00000524523 TRPC6Q9Y210 931 aa11.89□□□□□ -0.51
CTR9-202ENST00000524523 ECM2O94769 699 aaPredicted RBP11.88□□□□□ -0.51
CTR9-202ENST00000524523 KIF21BO75037 1637 aa11.88□□□□□ -0.51
CTR9-202ENST00000524523 PKD2Q13563 968 aa11.87□□□□□ -0.51
CTR9-202ENST00000524523 ASTLQ6HA08 431 aaPredicted RBP11.87□□□□□ -0.51
CTR9-202ENST00000524523 RUSC2Q8N2Y8 1516 aa11.86□□□□□ -0.51
CTR9-202ENST00000524523 ATMINO43313 823 aaPredicted RBP11.86□□□□□ -0.51
CTR9-202ENST00000524523 BMP2KQ9NSY1 1161 aaPredicted RBP11.86□□□□□ -0.51
CTR9-202ENST00000524523 PRXQ9BXM0 1461 aa11.83□□□□□ -0.52
CTR9-202ENST00000524523 ERICH3Q5RHP9 1530 aa11.83□□□□□ -0.52
CTR9-202ENST00000524523 TTLL13PA6NNM8 815 aa11.83□□□□□ -0.52
CTR9-202ENST00000524523 TMEM106CQ9BVX2 250 aa11.83□□□□□ -0.52
CTR9-202ENST00000524523 ATN1P54259 1190 aaPredicted RBP11.82□□□□□ -0.52
CTR9-202ENST00000524523 TRIM26Q12899 539 aaPredicted RBP11.82□□□□□ -0.52
CTR9-202ENST00000524523 DNMBPQ6XZF7 1577 aa11.82□□□□□ -0.52
CTR9-202ENST00000524523 RIOK3O14730 519 aaKnown RBP11.81□□□□□ -0.52
CTR9-202ENST00000524523 UBTFP17480 764 aaKnown RBP11.81□□□□□ -0.52
CTR9-202ENST00000524523 PDAP1Q13442 181 aaKnown RBP11.81□□□□□ -0.52
CTR9-202ENST00000524523 PSEN1P49768 467 aa11.8□□□□□ -0.52
CTR9-202ENST00000524523 CEP162Q5TB80 1403 aa11.79□□□□□ -0.52
CTR9-202ENST00000524523 AMER1Q5JTC6 1135 aaPredicted RBP11.79□□□□□ -0.52
CTR9-202ENST00000524523 TOPBP1Q92547 1522 aa11.78□□□□□ -0.52
CTR9-202ENST00000524523 TAOK2Q9UL54 1235 aa11.78□□□□□ -0.52
CTR9-202ENST00000524523 IGF1RP08069 1367 aa11.78□□□□□ -0.52
CTR9-202ENST00000524523 FGD5Q6ZNL6 1462 aa11.77□□□□□ -0.52
CTR9-202ENST00000524523 ABCA10Q8WWZ4 1543 aa11.77□□□□□ -0.52
CTR9-202ENST00000524523 PELP1Q8IZL8 1130 aaKnown RBP11.77□□□□□ -0.53
CTR9-202ENST00000524523 RNF25Q96BH1 459 aaPredicted RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms