RNA–Protein interactions for RNA: ENST00000524523.1

CTR9-202, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 5

Gene CTR9, Length 902 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-202ENST00000524523 AEBP2Q6ZN18 517 aaPredicted RBP24.05■■□□□ 1.44
CTR9-202ENST00000524523 CHIC1Q5VXU3 224 aa23.37■■□□□ 1.33
CTR9-202ENST00000524523 SENP3Q9H4L4 574 aaPredicted RBP20.52■□□□□ 0.88
CTR9-202ENST00000524523 PHF23Q9BUL5 403 aaPredicted RBP20.48■□□□□ 0.87
CTR9-202ENST00000524523 FOXD1Q16676 465 aa19.02■□□□□ 0.64
CTR9-202ENST00000524523 PLPPR3Q6T4P5 718 aa18.94■□□□□ 0.62
CTR9-202ENST00000524523 PPP6R1Q9UPN7 881 aa18.14■□□□□ 0.49
CTR9-202ENST00000524523 ADRA2BP18089 450 aa18.13■□□□□ 0.49
CTR9-202ENST00000524523 PIAS4Q8N2W9 510 aaPredicted RBP17.93■□□□□ 0.46
CTR9-202ENST00000524523 MSH5O43196 834 aa17.67■□□□□ 0.42
CTR9-202ENST00000524523 SCAF1Q9H7N4 1312 aaKnown RBP16.7■□□□□ 0.26
CTR9-202ENST00000524523 PPP4R3CPQ6ZMV5 832 aa16.64■□□□□ 0.25
CTR9-202ENST00000524523 NISCHQ9Y2I1 1504 aa16.6■□□□□ 0.25
CTR9-202ENST00000524523 MAPK8IP2Q13387 824 aaPredicted RBP16.49■□□□□ 0.23
CTR9-202ENST00000524523 POTEDQ86YR6 584 aa16.36■□□□□ 0.21
CTR9-202ENST00000524523 DMRT2Q9Y5R5 561 aa16.33■□□□□ 0.2
CTR9-202ENST00000524523 CNKSR2Q8WXI2 1034 aa16.23■□□□□ 0.19
CTR9-202ENST00000524523 NCBP3Q53F19 620 aaKnown RBP16.21■□□□□ 0.19
CTR9-202ENST00000524523 KCNA4P22459 653 aa16.02■□□□□ 0.16
CTR9-202ENST00000524523 RNF216Q9NWF9 866 aaPredicted RBP15.96■□□□□ 0.15
CTR9-202ENST00000524523 HOXD11P31277 338 aaPredicted RBP15.92■□□□□ 0.14
CTR9-202ENST00000524523 NPM3O75607 178 aaKnown RBP15.9■□□□□ 0.14
CTR9-202ENST00000524523 DCAF8L1A6NGE4 600 aa15.68■□□□□ 0.1
CTR9-202ENST00000524523 DNAJC5BQ9UF47 199 aa15.47■□□□□ 0.07
CTR9-202ENST00000524523 SLC4A1APQ9BWU0 796 aaKnown RBP15.26■□□□□ 0.03
CTR9-202ENST00000524523 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.21■□□□□ 0.03
CTR9-202ENST00000524523 RNF39Q9H2S5 420 aa15.08■□□□□ 0
CTR9-202ENST00000524523 SLC4A2P04920 1241 aa15.03■□□□□ -0
CTR9-202ENST00000524523 C1QBPQ07021 282 aaKnown RBP14.93□□□□□ -0.02
CTR9-202ENST00000524523 U3KPZ7 1027 aaPredicted RBP14.89□□□□□ -0.03
CTR9-202ENST00000524523 CACNB1Q02641 598 aaPredicted RBP14.86□□□□□ -0.03
CTR9-202ENST00000524523 FOXD4L1Q9NU39 408 aa14.83□□□□□ -0.04
CTR9-202ENST00000524523 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.73□□□□□ -0.05
CTR9-202ENST00000524523 MYCNP04198 464 aaPredicted RBP14.73□□□□□ -0.05
CTR9-202ENST00000524523 HNRNPUL2Q1KMD3 747 aaKnown RBP14.73□□□□□ -0.05
CTR9-202ENST00000524523 ZBTB22O15209 634 aa14.69□□□□□ -0.06
CTR9-202ENST00000524523 SAMD1Q6SPF0 538 aaPredicted RBP14.65□□□□□ -0.06
CTR9-202ENST00000524523 APLP2Q06481 763 aa14.64□□□□□ -0.07
CTR9-202ENST00000524523 EHMT2Q96KQ7 1210 aa14.61□□□□□ -0.07
CTR9-202ENST00000524523 CAPN15O75808 1086 aa14.53□□□□□ -0.08
CTR9-202ENST00000524523 SPINK5Q9NQ38 1064 aaPredicted RBP14.52□□□□□ -0.09
CTR9-202ENST00000524523 CSRNP3Q8WYN3 585 aa14.51□□□□□ -0.09
CTR9-202ENST00000524523 ZNF219Q9P2Y4 722 aaPredicted RBP14.42□□□□□ -0.1
CTR9-202ENST00000524523 CCDC180Q9P1Z9 1646 aa14.41□□□□□ -0.1
CTR9-202ENST00000524523 TRHP20396 242 aaPredicted RBP14.41□□□□□ -0.1
CTR9-202ENST00000524523 ATXN8OSP0DMR3 200 aa14.35□□□□□ -0.11
CTR9-202ENST00000524523 DSG3P32926 999 aa14.29□□□□□ -0.12
CTR9-202ENST00000524523 ATF5Q9Y2D1 282 aaPredicted RBP14.28□□□□□ -0.12
CTR9-202ENST00000524523 ABCB7O75027 752 aa14.2□□□□□ -0.14
CTR9-202ENST00000524523 POLA2Q14181 598 aa14.13□□□□□ -0.15
CTR9-202ENST00000524523 ZCCHC6Q5VYS8 1495 aaKnown RBP13.97□□□□□ -0.17
CTR9-202ENST00000524523 ZBTB12Q9Y330 459 aaPredicted RBP13.93□□□□□ -0.18
CTR9-202ENST00000524523 DCAF1Q9Y4B6 1507 aa13.87□□□□□ -0.19
CTR9-202ENST00000524523 FBLN2P98095 1184 aa13.8□□□□□ -0.2
CTR9-202ENST00000524523 MYO15BQ96JP2 1530 aa13.71□□□□□ -0.21
CTR9-202ENST00000524523 RBM42Q9BTD8 480 aaKnown RBP13.69□□□□□ -0.22
CTR9-202ENST00000524523 MKRN4PQ13434 485 aaPredicted RBP13.66□□□□□ -0.22
CTR9-202ENST00000524523 OSCARQ8IYS5 282 aa13.63□□□□□ -0.23
CTR9-202ENST00000524523 DCAF8L2P0C7V8 631 aa13.54□□□□□ -0.24
CTR9-202ENST00000524523 SPDYE2BA6NHP3 402 aa13.51□□□□□ -0.25
CTR9-202ENST00000524523 SPDYE6P0CI01 402 aa13.51□□□□□ -0.25
CTR9-202ENST00000524523 SPDYE2Q495Y8 402 aa13.51□□□□□ -0.25
CTR9-202ENST00000524523 NACADO15069 1562 aa13.46□□□□□ -0.25
CTR9-202ENST00000524523 AKT1S1Q96B36 256 aa13.45□□□□□ -0.26
CTR9-202ENST00000524523 ZNF692Q9BU19 519 aaPredicted RBP13.44□□□□□ -0.26
CTR9-202ENST00000524523 SHROOM4Q9ULL8 1493 aa13.4□□□□□ -0.26
CTR9-202ENST00000524523 ABCC9O60706 1549 aa13.37□□□□□ -0.27
CTR9-202ENST00000524523 SSUH2Q9Y2M2 353 aa13.35□□□□□ -0.27
CTR9-202ENST00000524523 SPDYE4A6NLX3 237 aa13.32□□□□□ -0.28
CTR9-202ENST00000524523 REM2Q8IYK8 340 aaPredicted RBP13.31□□□□□ -0.28
CTR9-202ENST00000524523 RB1CC1Q8TDY2 1594 aa13.26□□□□□ -0.29
CTR9-202ENST00000524523 PABPN1Q86U42 306 aaKnown RBP eCLIP13.23□□□□□ -0.29
CTR9-202ENST00000524523 SPDYE1Q8NFV5 336 aaPredicted RBP13.17□□□□□ -0.3
CTR9-202ENST00000524523 FKBP8Q14318 412 aa13.16□□□□□ -0.3
CTR9-202ENST00000524523 PITPNM1O00562 1244 aa13.14□□□□□ -0.31
CTR9-202ENST00000524523 CHRDL2Q6WN34 429 aa13.14□□□□□ -0.31
CTR9-202ENST00000524523 CLEC11AQ9Y240 323 aa13.11□□□□□ -0.31
CTR9-202ENST00000524523 SCRIBQ14160 1630 aa13.09□□□□□ -0.31
CTR9-202ENST00000524523 SUPT5HO00267 1087 aaKnown RBP13.06□□□□□ -0.32
CTR9-202ENST00000524523 PROM2Q8N271 834 aa13.04□□□□□ -0.32
CTR9-202ENST00000524523 STAG3Q9UJ98 1225 aa13.03□□□□□ -0.32
CTR9-202ENST00000524523 PRR29P0C7W0 189 aa12.98□□□□□ -0.33
CTR9-202ENST00000524523 FXR2P51116 673 aaKnown RBP eCLIP12.94□□□□□ -0.34
CTR9-202ENST00000524523 POTEHQ6S545 545 aa12.93□□□□□ -0.34
CTR9-202ENST00000524523 RSF1Q96T23 1441 aaPredicted RBP12.93□□□□□ -0.34
CTR9-202ENST00000524523 PIP4P2Q8N4L2 257 aa12.92□□□□□ -0.34
CTR9-202ENST00000524523 BAZ1AQ9NRL2 1556 aaPredicted RBP12.83□□□□□ -0.36
CTR9-202ENST00000524523 PRKAR2AP13861 404 aaKnown RBP12.83□□□□□ -0.36
CTR9-202ENST00000524523 FBXO3Q9UK99 471 aa12.8□□□□□ -0.36
CTR9-202ENST00000524523 CECR2Q9BXF3 1484 aa12.79□□□□□ -0.36
CTR9-202ENST00000524523 BICRAQ9NZM4 1560 aa12.77□□□□□ -0.36
CTR9-202ENST00000524523 UNC13AQ9UPW8 1703 aa12.77□□□□□ -0.36
CTR9-202ENST00000524523 CHADLQ6NUI6 762 aa12.76□□□□□ -0.37
CTR9-202ENST00000524523 MROH2BQ7Z745 1585 aa12.75□□□□□ -0.37
CTR9-202ENST00000524523 CREBZFQ9NS37 354 aa12.72□□□□□ -0.37
CTR9-202ENST00000524523 PLEKHG5O94827 1062 aa12.69□□□□□ -0.38
CTR9-202ENST00000524523 MIER1Q8N108 512 aa12.68□□□□□ -0.38
CTR9-202ENST00000524523 SMARCA4P51532 1647 aa12.67□□□□□ -0.38
CTR9-202ENST00000524523 PLCD3Q8N3E9 789 aa12.65□□□□□ -0.38
CTR9-202ENST00000524523 FARP1Q9Y4F1 1045 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 151.9 ms