RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, humanhuman

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-215ENST00000522963 CSRNP3Q8WYN3 585 aa19.73■□□□□ 0.75
PVT1-215ENST00000522963 ARAP1Q96P48 1450 aa19.7■□□□□ 0.74
PVT1-215ENST00000522963 RAPGEF2Q9Y4G8 1499 aa19.67■□□□□ 0.74
PVT1-215ENST00000522963 JPH4Q96JJ6 628 aa19.67■□□□□ 0.74
PVT1-215ENST00000522963 ERCC6L2Q5T890 1561 aa19.66■□□□□ 0.74
PVT1-215ENST00000522963 KIAA0586Q9BVV6 1533 aa19.64■□□□□ 0.73
PVT1-215ENST00000522963 SHROOM2Q13796 1616 aa19.64■□□□□ 0.73
PVT1-215ENST00000522963 PRG4Q92954 1404 aaPredicted RBP19.63■□□□□ 0.73
PVT1-215ENST00000522963 PRXQ9BXM0 1461 aa19.61■□□□□ 0.73
PVT1-215ENST00000522963 IQGAP2Q13576 1575 aa19.55■□□□□ 0.72
PVT1-215ENST00000522963 TTBK1Q5TCY1 1321 aaPredicted RBP19.53■□□□□ 0.72
PVT1-215ENST00000522963 EHMT2Q96KQ7 1210 aa19.52■□□□□ 0.72
PVT1-215ENST00000522963 KIF21BO75037 1637 aa19.51■□□□□ 0.71
PVT1-215ENST00000522963 CTTNBP2Q8WZ74 1663 aa19.5■□□□□ 0.71
PVT1-215ENST00000522963 GOLGA3Q08378 1498 aa19.47■□□□□ 0.71
PVT1-215ENST00000522963 CARMIL2Q6F5E8 1435 aa19.46■□□□□ 0.71
PVT1-215ENST00000522963 LOC105371045A0A1W2PR82 267 aa19.44■□□□□ 0.7
PVT1-215ENST00000522963 RANGAP1P46060 587 aaPredicted RBP19.42■□□□□ 0.7
PVT1-215ENST00000522963 UGGT2Q9NYU1 1516 aa19.41■□□□□ 0.7
PVT1-215ENST00000522963 UBTFP17480 764 aaKnown RBP19.4■□□□□ 0.7
PVT1-215ENST00000522963 TRHP20396 242 aaPredicted RBP19.4■□□□□ 0.7
PVT1-215ENST00000522963 PTPRGP23470 1445 aa19.4■□□□□ 0.7
PVT1-215ENST00000522963 TNIKQ9UKE5 1360 aa19.39■□□□□ 0.69
PVT1-215ENST00000522963 DISP1Q96F81 1524 aa19.39■□□□□ 0.69
PVT1-215ENST00000522963 KIAA0556O60303 1618 aa19.36■□□□□ 0.69
PVT1-215ENST00000522963 P3H3Q8IVL6 736 aa19.35■□□□□ 0.69
PVT1-215ENST00000522963 NPM1P06748 294 aaKnown RBP eCLIP19.33■□□□□ 0.68
PVT1-215ENST00000522963 ADCY10Q96PN6 1610 aa19.31■□□□□ 0.68
PVT1-215ENST00000522963 UACAQ9BZF9 1416 aa19.25■□□□□ 0.67
PVT1-215ENST00000522963 SAMD9Q5K651 1589 aa19.2■□□□□ 0.66
PVT1-215ENST00000522963 PLB1Q6P1J6 1458 aa19.19■□□□□ 0.66
PVT1-215ENST00000522963 ABCC2Q92887 1545 aa19.19■□□□□ 0.66
PVT1-215ENST00000522963 FHOD3Q2V2M9 1422 aa19.17■□□□□ 0.66
PVT1-215ENST00000522963 UHRF1BP1LA0JNW5 1464 aa19.17■□□□□ 0.66
PVT1-215ENST00000522963 CEP162Q5TB80 1403 aa19.17■□□□□ 0.66
PVT1-215ENST00000522963 ARID3CA6NKF2 412 aa19.16■□□□□ 0.66
PVT1-215ENST00000522963 CLIP1P30622 1438 aa19.14■□□□□ 0.65
PVT1-215ENST00000522963 FAM69CQ0P6D2 419 aa19.13■□□□□ 0.65
PVT1-215ENST00000522963 MAPKBP1O60336 1514 aa19.13■□□□□ 0.65
PVT1-215ENST00000522963 ABCA8O94911 1581 aa19.13■□□□□ 0.65
PVT1-215ENST00000522963 EFCAB5A4FU69 1503 aa19.12■□□□□ 0.65
PVT1-215ENST00000522963 ARHGAP35Q9NRY4 1499 aa19.12■□□□□ 0.65
PVT1-215ENST00000522963 ZCCHC11Q5TAX3 1644 aaKnown RBP19.11■□□□□ 0.65
PVT1-215ENST00000522963 KIF13AQ9H1H9 1805 aa19.1■□□□□ 0.65
PVT1-215ENST00000522963 KDM5BQ9UGL1 1544 aa19.1■□□□□ 0.65
PVT1-215ENST00000522963 ASXL2Q76L83 1435 aa19.09■□□□□ 0.65
PVT1-215ENST00000522963 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.07■□□□□ 0.64
PVT1-215ENST00000522963 HNRNPUL2Q1KMD3 747 aaKnown RBP19.07■□□□□ 0.64
PVT1-215ENST00000522963 ABCC10Q5T3U5 1492 aa19.07■□□□□ 0.64
PVT1-215ENST00000522963 RAPGEF6Q8TEU7 1601 aa19.07■□□□□ 0.64
PVT1-215ENST00000522963 ATP1B4Q9UN42 357 aaPredicted RBP19.05■□□□□ 0.64
PVT1-215ENST00000522963 DIP2BQ9P265 1576 aa19.05■□□□□ 0.64
PVT1-215ENST00000522963 TSPOAP1O95153 1857 aa19.02■□□□□ 0.64
PVT1-215ENST00000522963 KCNH8Q96L42 1107 aa19.01■□□□□ 0.63
PVT1-215ENST00000522963 ATP10BO94823 1461 aa19■□□□□ 0.63
PVT1-215ENST00000522963 NUP153P49790 1475 aaKnown RBP18.97■□□□□ 0.63
PVT1-215ENST00000522963 WDR7Q9Y4E6 1490 aa18.97■□□□□ 0.63
PVT1-215ENST00000522963 FMN1Q68DA7 1419 aa18.97■□□□□ 0.63
PVT1-215ENST00000522963 EPRSP07814 1512 aaKnown RBP18.95■□□□□ 0.62
PVT1-215ENST00000522963 GLI2P10070 1586 aa18.91■□□□□ 0.62
PVT1-215ENST00000522963 HECW1Q76N89 1606 aa18.9■□□□□ 0.62
PVT1-215ENST00000522963 VPS8Q8N3P4 1428 aa18.9■□□□□ 0.62
PVT1-215ENST00000522963 CDK13Q14004 1512 aaKnown RBP18.9■□□□□ 0.62
PVT1-215ENST00000522963 PLEKHD1A6NEE1 506 aa18.89■□□□□ 0.61
PVT1-215ENST00000522963 MAP3K4Q9Y6R4 1608 aa18.85■□□□□ 0.61
PVT1-215ENST00000522963 PCF11O94913 1555 aaKnown RBP18.85■□□□□ 0.61
PVT1-215ENST00000522963 CASKIN1Q8WXD9 1431 aa18.85■□□□□ 0.61
PVT1-215ENST00000522963 PPRC1Q5VV67 1664 aaKnown RBP18.83■□□□□ 0.61
PVT1-215ENST00000522963 CD109Q6YHK3 1445 aa18.83■□□□□ 0.6
PVT1-215ENST00000522963 CFAP43Q8NDM7 1665 aa18.82■□□□□ 0.6
PVT1-215ENST00000522963 LRRIQ1Q96JM4 1722 aa18.81■□□□□ 0.6
PVT1-215ENST00000522963 FYCO1Q9BQS8 1478 aa18.8■□□□□ 0.6
PVT1-215ENST00000522963 CDK11AQ9UQ88 783 aaPredicted RBP18.8■□□□□ 0.6
PVT1-215ENST00000522963 KDM6BO15054 1643 aa18.79■□□□□ 0.6
PVT1-215ENST00000522963 TEX14Q8IWB6 1497 aa18.78■□□□□ 0.6
PVT1-215ENST00000522963 ABCA9Q8IUA7 1624 aa18.76■□□□□ 0.59
PVT1-215ENST00000522963 CCDC18Q5T9S5 1454 aa18.74■□□□□ 0.59
PVT1-215ENST00000522963 MAGI3Q5TCQ9 1506 aa18.73■□□□□ 0.59
PVT1-215ENST00000522963 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.71■□□□□ 0.59
PVT1-215ENST00000522963 TROQ12816 1431 aaPredicted RBP18.7■□□□□ 0.58
PVT1-215ENST00000522963 TTC37Q6PGP7 1564 aa18.7■□□□□ 0.58
PVT1-215ENST00000522963 KIF14Q15058 1648 aa18.68■□□□□ 0.58
PVT1-215ENST00000522963 COL17A1Q9UMD9 1497 aaPredicted RBP18.67■□□□□ 0.58
PVT1-215ENST00000522963 APLP2Q06481 763 aa18.67■□□□□ 0.58
PVT1-215ENST00000522963 MAP3K1Q13233 1512 aa18.64■□□□□ 0.58
PVT1-215ENST00000522963 TIAM1Q13009 1591 aa18.64■□□□□ 0.58
PVT1-215ENST00000522963 KANK4Q5T7N3 995 aaPredicted RBP18.63■□□□□ 0.57
PVT1-215ENST00000522963 MTUS2Q5JR59 1369 aa18.62■□□□□ 0.57
PVT1-215ENST00000522963 MYO5CQ9NQX4 1742 aa18.62■□□□□ 0.57
PVT1-215ENST00000522963 FANCAO15360 1455 aa18.61■□□□□ 0.57
PVT1-215ENST00000522963 NEO1Q92859 1461 aa18.6■□□□□ 0.57
PVT1-215ENST00000522963 LRRC9Q6ZRR7 1453 aa18.58■□□□□ 0.57
PVT1-215ENST00000522963 PLCH2O75038 1416 aa18.58■□□□□ 0.57
PVT1-215ENST00000522963 RAPGEF3O95398 923 aa18.58■□□□□ 0.56
PVT1-215ENST00000522963 AKNAQ7Z591 1439 aa18.57■□□□□ 0.56
PVT1-215ENST00000522963 PHLDB1Q86UU1 1377 aa18.57■□□□□ 0.56
PVT1-215ENST00000522963 CFAP74Q9C0B2 1584 aa18.57■□□□□ 0.56
PVT1-215ENST00000522963 ARAP3Q8WWN8 1544 aa18.57■□□□□ 0.56
PVT1-215ENST00000522963 ARHGAP5Q13017 1502 aa18.56■□□□□ 0.56
PVT1-215ENST00000522963 EFCAB2Q5VUJ9 269 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms