RNA–Protein interactions for RNA: ENST00000520561.1

CSMD1-208, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 4

Gene CSMD1, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-208ENST00000520561 CEP162Q5TB80 1403 aa14.39□□□□□ -0.11
CSMD1-208ENST00000520561 CEP170Q5SW79 1584 aa14.38□□□□□ -0.11
CSMD1-208ENST00000520561 NUP160Q12769 1436 aa14.37□□□□□ -0.11
CSMD1-208ENST00000520561 IQGAP2Q13576 1575 aa14.37□□□□□ -0.11
CSMD1-208ENST00000520561 KIAA0586Q9BVV6 1533 aa14.35□□□□□ -0.11
CSMD1-208ENST00000520561 CLIP1P30622 1438 aa14.33□□□□□ -0.11
CSMD1-208ENST00000520561 EFCAB5A4FU69 1503 aa14.32□□□□□ -0.12
CSMD1-208ENST00000520561 RANGAP1P46060 587 aaPredicted RBP14.3□□□□□ -0.12
CSMD1-208ENST00000520561 UGGT2Q9NYU1 1516 aa14.28□□□□□ -0.12
CSMD1-208ENST00000520561 CLASP1Q7Z460 1538 aa14.27□□□□□ -0.12
CSMD1-208ENST00000520561 SAMD9Q5K651 1589 aa14.26□□□□□ -0.13
CSMD1-208ENST00000520561 ARHGAP35Q9NRY4 1499 aa14.26□□□□□ -0.13
CSMD1-208ENST00000520561 ARAP1Q96P48 1450 aa14.23□□□□□ -0.13
CSMD1-208ENST00000520561 KIAA0556O60303 1618 aa14.23□□□□□ -0.13
CSMD1-208ENST00000520561 SHROOM2Q13796 1616 aa14.22□□□□□ -0.13
CSMD1-208ENST00000520561 CARMIL2Q6F5E8 1435 aa14.21□□□□□ -0.13
CSMD1-208ENST00000520561 FHOD3Q2V2M9 1422 aa14.2□□□□□ -0.14
CSMD1-208ENST00000520561 VPS8Q8N3P4 1428 aa14.19□□□□□ -0.14
CSMD1-208ENST00000520561 JPH4Q96JJ6 628 aa14.19□□□□□ -0.14
CSMD1-208ENST00000520561 DISP1Q96F81 1524 aa14.19□□□□□ -0.14
CSMD1-208ENST00000520561 OSCARQ8IYS5 282 aa14.18□□□□□ -0.14
CSMD1-208ENST00000520561 PRG4Q92954 1404 aaPredicted RBP14.16□□□□□ -0.14
CSMD1-208ENST00000520561 P3H3Q8IVL6 736 aa14.16□□□□□ -0.14
CSMD1-208ENST00000520561 FMN1Q68DA7 1419 aa14.15□□□□□ -0.14
CSMD1-208ENST00000520561 PCF11O94913 1555 aaKnown RBP14.12□□□□□ -0.15
CSMD1-208ENST00000520561 FYCO1Q9BQS8 1478 aa14.1□□□□□ -0.15
CSMD1-208ENST00000520561 ERCC6L2Q5T890 1561 aa14.09□□□□□ -0.15
CSMD1-208ENST00000520561 CASKIN1Q8WXD9 1431 aa14.07□□□□□ -0.16
CSMD1-208ENST00000520561 HECW1Q76N89 1606 aa14.07□□□□□ -0.16
CSMD1-208ENST00000520561 RAPGEF6Q8TEU7 1601 aa14.05□□□□□ -0.16
CSMD1-208ENST00000520561 TTBK1Q5TCY1 1321 aaPredicted RBP14.05□□□□□ -0.16
CSMD1-208ENST00000520561 PTPRGP23470 1445 aa14.05□□□□□ -0.16
CSMD1-208ENST00000520561 APLP2Q06481 763 aa14.04□□□□□ -0.16
CSMD1-208ENST00000520561 CFAP43Q8NDM7 1665 aa14.02□□□□□ -0.16
CSMD1-208ENST00000520561 ABCA8O94911 1581 aa14.02□□□□□ -0.16
CSMD1-208ENST00000520561 ARHGEF11O15085 1522 aa14.01□□□□□ -0.17
CSMD1-208ENST00000520561 CCDC18Q5T9S5 1454 aa14.01□□□□□ -0.17
CSMD1-208ENST00000520561 PLB1Q6P1J6 1458 aa14□□□□□ -0.17
CSMD1-208ENST00000520561 ATP1B4Q9UN42 357 aaPredicted RBP14□□□□□ -0.17
CSMD1-208ENST00000520561 TIAM1Q13009 1591 aa14□□□□□ -0.17
CSMD1-208ENST00000520561 MAP3K1Q13233 1512 aa14□□□□□ -0.17
CSMD1-208ENST00000520561 UACAQ9BZF9 1416 aa13.98□□□□□ -0.17
CSMD1-208ENST00000520561 ABCC2Q92887 1545 aa13.97□□□□□ -0.17
CSMD1-208ENST00000520561 NUP153P49790 1475 aaKnown RBP13.97□□□□□ -0.17
CSMD1-208ENST00000520561 EPRSP07814 1512 aaKnown RBP13.96□□□□□ -0.17
CSMD1-208ENST00000520561 LRRIQ1Q96JM4 1722 aa13.96□□□□□ -0.17
CSMD1-208ENST00000520561 RIMBP3CA6NJZ7 1639 aa13.96□□□□□ -0.17
CSMD1-208ENST00000520561 RIMBP3BA6NNM3 1639 aa13.96□□□□□ -0.17
CSMD1-208ENST00000520561 RIMBP3Q9UFD9 1639 aa13.96□□□□□ -0.17
CSMD1-208ENST00000520561 CDK13Q14004 1512 aaKnown RBP13.94□□□□□ -0.18
CSMD1-208ENST00000520561 UHRF1BP1LA0JNW5 1464 aa13.93□□□□□ -0.18
CSMD1-208ENST00000520561 EHBP1L1Q8N3D4 1523 aa13.91□□□□□ -0.18
CSMD1-208ENST00000520561 LRRC9Q6ZRR7 1453 aa13.91□□□□□ -0.18
CSMD1-208ENST00000520561 ADCY10Q96PN6 1610 aa13.9□□□□□ -0.18
CSMD1-208ENST00000520561 MTUS2Q5JR59 1369 aa13.89□□□□□ -0.19
CSMD1-208ENST00000520561 ARID3CA6NKF2 412 aa13.89□□□□□ -0.19
CSMD1-208ENST00000520561 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.88□□□□□ -0.19
CSMD1-208ENST00000520561 HNRNPUL2Q1KMD3 747 aaKnown RBP13.88□□□□□ -0.19
CSMD1-208ENST00000520561 ATP10BO94823 1461 aa13.87□□□□□ -0.19
CSMD1-208ENST00000520561 ZCCHC11Q5TAX3 1644 aaKnown RBP13.87□□□□□ -0.19
CSMD1-208ENST00000520561 KDM5BQ9UGL1 1544 aa13.86□□□□□ -0.19
CSMD1-208ENST00000520561 PPARGC1BQ86YN6 1023 aaKnown RBP13.86□□□□□ -0.19
CSMD1-208ENST00000520561 CDK11AQ9UQ88 783 aaPredicted RBP13.86□□□□□ -0.19
CSMD1-208ENST00000520561 MAGI3Q5TCQ9 1506 aa13.85□□□□□ -0.19
CSMD1-208ENST00000520561 SUPT6HQ7KZ85 1726 aaKnown RBP13.84□□□□□ -0.19
CSMD1-208ENST00000520561 KANK4Q5T7N3 995 aaPredicted RBP13.84□□□□□ -0.19
CSMD1-208ENST00000520561 TROQ12816 1431 aaPredicted RBP13.83□□□□□ -0.2
CSMD1-208ENST00000520561 KIF14Q15058 1648 aa13.82□□□□□ -0.2
CSMD1-208ENST00000520561 PLEKHD1A6NEE1 506 aa13.8□□□□□ -0.2
CSMD1-208ENST00000520561 CYB5RLQ6IPT4 315 aa13.8□□□□□ -0.2
CSMD1-208ENST00000520561 NPM1P06748 294 aaKnown RBP eCLIP13.79□□□□□ -0.2
CSMD1-208ENST00000520561 NCOA2Q15596 1464 aa13.79□□□□□ -0.2
CSMD1-208ENST00000520561 WDR7Q9Y4E6 1490 aa13.76□□□□□ -0.21
CSMD1-208ENST00000520561 ITSN2Q9NZM3 1697 aa13.74□□□□□ -0.21
CSMD1-208ENST00000520561 MAPKBP1O60336 1514 aa13.74□□□□□ -0.21
CSMD1-208ENST00000520561 ASXL2Q76L83 1435 aa13.73□□□□□ -0.21
CSMD1-208ENST00000520561 PHLDB1Q86UU1 1377 aa13.73□□□□□ -0.21
CSMD1-208ENST00000520561 MYOM3Q5VTT5 1437 aa13.73□□□□□ -0.21
CSMD1-208ENST00000520561 TRIM26Q12899 539 aaPredicted RBP13.72□□□□□ -0.21
CSMD1-208ENST00000520561 CCNB3Q8WWL7 1395 aa13.71□□□□□ -0.21
CSMD1-208ENST00000520561 RRBP1Q9P2E9 1410 aaKnown RBP13.71□□□□□ -0.22
CSMD1-208ENST00000520561 ABCC10Q5T3U5 1492 aa13.7□□□□□ -0.22
CSMD1-208ENST00000520561 DNAJC5Q9H3Z4 198 aa13.7□□□□□ -0.22
CSMD1-208ENST00000520561 TTC37Q6PGP7 1564 aa13.7□□□□□ -0.22
CSMD1-208ENST00000520561 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.69□□□□□ -0.22
CSMD1-208ENST00000520561 FGD6Q6ZV73 1430 aa13.69□□□□□ -0.22
CSMD1-208ENST00000520561 PREX2Q70Z35 1606 aa13.68□□□□□ -0.22
CSMD1-208ENST00000520561 MYO5CQ9NQX4 1742 aa13.67□□□□□ -0.22
CSMD1-208ENST00000520561 MIA2Q96PC5 1412 aa13.67□□□□□ -0.22
CSMD1-208ENST00000520561 KCNH8Q96L42 1107 aa13.67□□□□□ -0.22
CSMD1-208ENST00000520561 ABCA9Q8IUA7 1624 aa13.67□□□□□ -0.22
CSMD1-208ENST00000520561 CDC42BPAQ5VT25 1732 aa13.67□□□□□ -0.22
CSMD1-208ENST00000520561 PTPN23Q9H3S7 1636 aa13.66□□□□□ -0.22
CSMD1-208ENST00000520561 GPATCH8Q9UKJ3 1502 aaKnown RBP13.65□□□□□ -0.22
CSMD1-208ENST00000520561 TCOF1Q13428 1488 aaKnown RBP13.63□□□□□ -0.23
CSMD1-208ENST00000520561 ARHGAP5Q13017 1502 aa13.63□□□□□ -0.23
CSMD1-208ENST00000520561 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.62□□□□□ -0.23
CSMD1-208ENST00000520561 CFDP1Q9UEE9 299 aaPredicted RBP13.62□□□□□ -0.23
CSMD1-208ENST00000520561 ARAP3Q8WWN8 1544 aa13.62□□□□□ -0.23
CSMD1-208ENST00000520561 GLI2P10070 1586 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms