RNA–Protein interactions for RNA: ENST00000519004.5

PABPC1-208, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 2 BASIC

Gene PABPC1, Length 2,401 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-208ENST00000519004 WASHC2AQ641Q2 1341 aa18.74■□□□□ 0.59
PABPC1-208ENST00000519004 RRBP1Q9P2E9 1410 aaKnown RBP18.72■□□□□ 0.59
PABPC1-208ENST00000519004 IPO9Q96P70 1041 aaKnown RBP18.7■□□□□ 0.58
PABPC1-208ENST00000519004 C11orf95C9JLR9 678 aaPredicted RBP18.69■□□□□ 0.58
PABPC1-208ENST00000519004 B4GALNT3Q6L9W6 998 aa18.69■□□□□ 0.58
PABPC1-208ENST00000519004 HNRNPUQ00839 825 aaKnown RBP eCLIP18.69■□□□□ 0.58
PABPC1-208ENST00000519004 BAZ1BQ9UIG0 1483 aaKnown RBP18.67■□□□□ 0.58
PABPC1-208ENST00000519004 PKNOX2Q96KN3 472 aa18.65■□□□□ 0.58
PABPC1-208ENST00000519004 WASHC2CQ9Y4E1 1318 aa18.64■□□□□ 0.57
PABPC1-208ENST00000519004 ANP32AP39687 249 aaKnown RBP18.63■□□□□ 0.57
PABPC1-208ENST00000519004 ZBTB47Q9UFB7 747 aaPredicted RBP18.63■□□□□ 0.57
PABPC1-208ENST00000519004 TOP2AP11388 1531 aaKnown RBP18.63■□□□□ 0.57
PABPC1-208ENST00000519004 HIRIP3Q9BW71 556 aaPredicted RBP18.62■□□□□ 0.57
PABPC1-208ENST00000519004 SMARCA2P51531 1590 aa18.62■□□□□ 0.57
PABPC1-208ENST00000519004 KANK4Q5T7N3 995 aaPredicted RBP18.6■□□□□ 0.57
PABPC1-208ENST00000519004 RAB3GAP2Q9H2M9 1393 aa18.6■□□□□ 0.57
PABPC1-208ENST00000519004 EIF5BO60841 1220 aaKnown RBP18.59■□□□□ 0.57
PABPC1-208ENST00000519004 RAPGEF2Q9Y4G8 1499 aa18.57■□□□□ 0.56
PABPC1-208ENST00000519004 CCNB3Q8WWL7 1395 aa18.56■□□□□ 0.56
PABPC1-208ENST00000519004 SIN3AQ96ST3 1273 aa18.54■□□□□ 0.56
PABPC1-208ENST00000519004 USP35Q9P2H5 1018 aa18.53■□□□□ 0.56
PABPC1-208ENST00000519004 BRPF3Q9ULD4 1205 aa18.53■□□□□ 0.56
PABPC1-208ENST00000519004 ARAP1Q96P48 1450 aa18.5■□□□□ 0.55
PABPC1-208ENST00000519004 NEFMP07197 916 aa18.5■□□□□ 0.55
PABPC1-208ENST00000519004 RANGAP1P46060 587 aaPredicted RBP18.5■□□□□ 0.55
PABPC1-208ENST00000519004 TIMELESSQ9UNS1 1208 aa18.49■□□□□ 0.55
PABPC1-208ENST00000519004 NCAPD3P42695 1498 aa18.46■□□□□ 0.55
PABPC1-208ENST00000519004 SYNJ1O43426 1573 aa18.43■□□□□ 0.54
PABPC1-208ENST00000519004 LAS1LQ9Y4W2 734 aaKnown RBP18.43■□□□□ 0.54
PABPC1-208ENST00000519004 SETD5Q9C0A6 1442 aa18.43■□□□□ 0.54
PABPC1-208ENST00000519004 RSPH6AQ9H0K4 717 aa18.41■□□□□ 0.54
PABPC1-208ENST00000519004 PEG3Q9GZU2 1588 aa18.39■□□□□ 0.53
PABPC1-208ENST00000519004 ZBED9Q6R2W3 1325 aa18.37■□□□□ 0.53
PABPC1-208ENST00000519004 PPM1GO15355 546 aaPredicted RBP18.35■□□□□ 0.53
PABPC1-208ENST00000519004 GSE1Q14687 1217 aa18.35■□□□□ 0.53
PABPC1-208ENST00000519004 CCDC184Q52MB2 194 aa18.35■□□□□ 0.53
PABPC1-208ENST00000519004 NPM2Q86SE8 214 aaKnown RBP18.3■□□□□ 0.52
PABPC1-208ENST00000519004 FAM43AQ8N2R8 423 aa18.28■□□□□ 0.52
PABPC1-208ENST00000519004 AKNAQ7Z591 1439 aa18.28■□□□□ 0.52
PABPC1-208ENST00000519004 RNF123Q5XPI4 1314 aa18.28■□□□□ 0.52
PABPC1-208ENST00000519004 SMARCA4P51532 1647 aa18.27■□□□□ 0.52
PABPC1-208ENST00000519004 ZMYND15Q9H091 742 aa18.27■□□□□ 0.52
PABPC1-208ENST00000519004 GLIPR1L2Q4G1C9 344 aa18.26■□□□□ 0.51
PABPC1-208ENST00000519004 FRAT1Q92837 279 aaPredicted RBP18.25■□□□□ 0.51
PABPC1-208ENST00000519004 SMG6Q86US8 1419 aaKnown RBP18.25■□□□□ 0.51
PABPC1-208ENST00000519004 ERICH3Q5RHP9 1530 aa18.25■□□□□ 0.51
PABPC1-208ENST00000519004 FAM9BQ8IZU0 186 aa18.24■□□□□ 0.51
PABPC1-208ENST00000519004 FHAD1B1AJZ9 1412 aa18.24■□□□□ 0.51
PABPC1-208ENST00000519004 TONSLQ96HA7 1378 aa18.22■□□□□ 0.51
PABPC1-208ENST00000519004 NCOA2Q15596 1464 aa18.21■□□□□ 0.51
PABPC1-208ENST00000519004 PLEKHG5O94827 1062 aa18.21■□□□□ 0.51
PABPC1-208ENST00000519004 VSIG10Q8N0Z9 540 aa18.2■□□□□ 0.5
PABPC1-208ENST00000519004 NFKBIBQ15653 356 aa18.19■□□□□ 0.5
PABPC1-208ENST00000519004 CNTLNQ9NXG0 1405 aa18.19■□□□□ 0.5
PABPC1-208ENST00000519004 PRXQ9BXM0 1461 aa18.18■□□□□ 0.5
PABPC1-208ENST00000519004 PDE4AP27815 886 aa18.18■□□□□ 0.5
PABPC1-208ENST00000519004 PODXL2Q9NZ53 605 aa18.18■□□□□ 0.5
PABPC1-208ENST00000519004 MRS2Q9HD23 443 aa18.17■□□□□ 0.5
PABPC1-208ENST00000519004 TCERG1O14776 1098 aaKnown RBP18.17■□□□□ 0.5
PABPC1-208ENST00000519004 BACH2Q9BYV9 841 aa18.16■□□□□ 0.5
PABPC1-208ENST00000519004 PRKRIP1Q9H875 184 aaPredicted RBP18.16■□□□□ 0.5
PABPC1-208ENST00000519004 KDM5BQ9UGL1 1544 aa18.15■□□□□ 0.5
PABPC1-208ENST00000519004 NUDCQ9Y266 331 aa18.15■□□□□ 0.5
PABPC1-208ENST00000519004 DCAF11Q8TEB1 546 aa18.14■□□□□ 0.49
PABPC1-208ENST00000519004 ARHGAP35Q9NRY4 1499 aa18.12■□□□□ 0.49
PABPC1-208ENST00000519004 TIAM1Q13009 1591 aa18.12■□□□□ 0.49
PABPC1-208ENST00000519004 PHLDB1Q86UU1 1377 aa18.12■□□□□ 0.49
PABPC1-208ENST00000519004 HSPA5P11021 654 aaKnown RBP18.1■□□□□ 0.49
PABPC1-208ENST00000519004 MAP3K1Q13233 1512 aa18.09■□□□□ 0.49
PABPC1-208ENST00000519004 DDRGK1Q96HY6 314 aa18.09■□□□□ 0.49
PABPC1-208ENST00000519004 MS4A1P11836 297 aa18.08■□□□□ 0.49
PABPC1-208ENST00000519004 FAM50AQ14320 339 aaKnown RBP18.07■□□□□ 0.48
PABPC1-208ENST00000519004 RRAGDQ9NQL2 400 aaPredicted RBP18.06■□□□□ 0.48
PABPC1-208ENST00000519004 LRRC9Q6ZRR7 1453 aa18.04■□□□□ 0.48
PABPC1-208ENST00000519004 TOP2BQ02880 1626 aa18.01■□□□□ 0.47
PABPC1-208ENST00000519004 NCOA1Q15788 1441 aa18■□□□□ 0.47
PABPC1-208ENST00000519004 CCDC7Q96M83 1385 aa17.99■□□□□ 0.47
PABPC1-208ENST00000519004 RRP9O43818 475 aaKnown RBP17.99■□□□□ 0.47
PABPC1-208ENST00000519004 HSP90AA2PQ14568 343 aaPredicted RBP17.99■□□□□ 0.47
PABPC1-208ENST00000519004 SLC4A3P48751 1232 aa17.98■□□□□ 0.47
PABPC1-208ENST00000519004 EXOC6Q8TAG9 804 aa17.97■□□□□ 0.47
PABPC1-208ENST00000519004 FRAT2O75474 233 aaPredicted RBP17.97■□□□□ 0.47
PABPC1-208ENST00000519004 EIF4G2P78344 907 aaKnown RBP eCLIP17.97■□□□□ 0.47
PABPC1-208ENST00000519004 UACAQ9BZF9 1416 aa17.97■□□□□ 0.47
PABPC1-208ENST00000519004 CCDC18Q5T9S5 1454 aa17.95■□□□□ 0.46
PABPC1-208ENST00000519004 SLC24A1O60721 1099 aa17.94■□□□□ 0.46
PABPC1-208ENST00000519004 DAXXQ9UER7 740 aaPredicted RBP17.93■□□□□ 0.46
PABPC1-208ENST00000519004 RRP1P56182 461 aaKnown RBP17.93■□□□□ 0.46
PABPC1-208ENST00000519004 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.91■□□□□ 0.469e-8■□□□□ 8.7
PABPC1-208ENST00000519004 BIVM-ERCC5R4GMW8 1640 aa17.91■□□□□ 0.46
PABPC1-208ENST00000519004 ABCA5Q8WWZ7 1642 aa17.91■□□□□ 0.46
PABPC1-208ENST00000519004 HSP90AA1P07900 732 aaKnown RBP17.91■□□□□ 0.46
PABPC1-208ENST00000519004 NAP1L5Q96NT1 182 aaPredicted RBP17.9■□□□□ 0.46
PABPC1-208ENST00000519004 CFAP43Q8NDM7 1665 aa17.89■□□□□ 0.46
PABPC1-208ENST00000519004 AQRO60306 1485 aaKnown RBP eCLIP17.87■□□□□ 0.451e-6■■■■■ 29.3
PABPC1-208ENST00000519004 PTPN23Q9H3S7 1636 aa17.86■□□□□ 0.45
PABPC1-208ENST00000519004 HFM1A2PYH4 1435 aa17.85■□□□□ 0.45
PABPC1-208ENST00000519004 SKAP1Q86WV1 359 aa17.85■□□□□ 0.45
PABPC1-208ENST00000519004 SENP3-EIF4A1A0A087X0R7 540 aa17.84■□□□□ 0.45
PABPC1-208ENST00000519004 PNNQ9H307 717 aaKnown RBP17.83■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms