RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 JPH4Q96JJ6 628 aa50.97■■■■■ 5.75
SYNPO-203ENST00000518872 KIAA0586Q9BVV6 1533 aa50.94■■■■■ 5.75
SYNPO-203ENST00000518872 PRG4Q92954 1404 aaPredicted RBP50.94■■■■■ 5.74
SYNPO-203ENST00000518872 TRHP20396 242 aaPredicted RBP50.72■■■■■ 5.71
SYNPO-203ENST00000518872 RAPGEF2Q9Y4G8 1499 aa50.63■■■■■ 5.7
SYNPO-203ENST00000518872 IQGAP2Q13576 1575 aa50.55■■■■■ 5.68
SYNPO-203ENST00000518872 CARMIL2Q6F5E8 1435 aa50.37■■■■■ 5.65
SYNPO-203ENST00000518872 PRXQ9BXM0 1461 aa50.33■■■■■ 5.65
SYNPO-203ENST00000518872 ADCY10Q96PN6 1610 aa50.32■■■■■ 5.65
SYNPO-203ENST00000518872 UGGT2Q9NYU1 1516 aa50.29■■■■■ 5.64
SYNPO-203ENST00000518872 TNIKQ9UKE5 1360 aa50.26■■■■■ 5.64
SYNPO-203ENST00000518872 PTPRGP23470 1445 aa50.25■■■■■ 5.63
SYNPO-203ENST00000518872 CTTNBP2Q8WZ74 1663 aa50.25■■■■■ 5.63
SYNPO-203ENST00000518872 DISP1Q96F81 1524 aa50.24■■■■■ 5.63
SYNPO-203ENST00000518872 MAPKBP1O60336 1514 aa50.18■■■■■ 5.62
SYNPO-203ENST00000518872 NPM1P06748 294 aaKnown RBP eCLIP50.14■■■■■ 5.62
SYNPO-203ENST00000518872 KIF13AQ9H1H9 1805 aa50.12■■■■■ 5.61
SYNPO-203ENST00000518872 EEA1Q15075 1411 aa50.09■■■■■ 5.61
SYNPO-203ENST00000518872 KIAA0556O60303 1618 aa50.08■■■■■ 5.61
SYNPO-203ENST00000518872 CSRNP3Q8WYN3 585 aa50.03■■■■■ 5.6
SYNPO-203ENST00000518872 UHRF1BP1LA0JNW5 1464 aa50■■■■■ 5.59
SYNPO-203ENST00000518872 ABCC10Q5T3U5 1492 aa50■■■■■ 5.59
SYNPO-203ENST00000518872 ABCC2Q92887 1545 aa49.95■■■■■ 5.59
SYNPO-203ENST00000518872 UACAQ9BZF9 1416 aa49.93■■■■■ 5.58
SYNPO-203ENST00000518872 GOLGA3Q08378 1498 aa49.92■■■■■ 5.58
SYNPO-203ENST00000518872 TTBK1Q5TCY1 1321 aaPredicted RBP49.9■■■■■ 5.58
SYNPO-203ENST00000518872 DIP2BQ9P265 1576 aa49.9■■■■■ 5.58
SYNPO-203ENST00000518872 FAM69CQ0P6D2 419 aa49.78■■■■■ 5.56
SYNPO-203ENST00000518872 KDM5BQ9UGL1 1544 aa49.75■■■■■ 5.55
SYNPO-203ENST00000518872 CHIC1Q5VXU3 224 aa49.73■■■■■ 5.55
SYNPO-203ENST00000518872 PLB1Q6P1J6 1458 aa49.68■■■■■ 5.54
SYNPO-203ENST00000518872 ASXL2Q76L83 1435 aa49.65■■■■■ 5.54
SYNPO-203ENST00000518872 KIF21BO75037 1637 aa49.63■■■■■ 5.53
SYNPO-203ENST00000518872 ABCA8O94911 1581 aa49.6■■■■■ 5.53
SYNPO-203ENST00000518872 ZCCHC11Q5TAX3 1644 aaKnown RBP49.6■■■■■ 5.53
SYNPO-203ENST00000518872 SAMD9Q5K651 1589 aa49.57■■■■■ 5.53
SYNPO-203ENST00000518872 GLI2P10070 1586 aa49.54■■■■■ 5.52
SYNPO-203ENST00000518872 FAM9AQ8IZU1 332 aaPredicted RBP49.53■■■■■ 5.52
SYNPO-203ENST00000518872 TSPOAP1O95153 1857 aa49.43■■■■■ 5.5
SYNPO-203ENST00000518872 EPRSP07814 1512 aaKnown RBP49.39■■■■■ 5.5
SYNPO-203ENST00000518872 WDR7Q9Y4E6 1490 aa49.33■■■■■ 5.49
SYNPO-203ENST00000518872 P3H3Q8IVL6 736 aa49.31■■■■■ 5.48
SYNPO-203ENST00000518872 PPRC1Q5VV67 1664 aaKnown RBP49.29■■■■■ 5.48
SYNPO-203ENST00000518872 MAP3K4Q9Y6R4 1608 aa49.27■■■■■ 5.48
SYNPO-203ENST00000518872 KDM6BO15054 1643 aa49.23■■■■■ 5.47
SYNPO-203ENST00000518872 EFCAB5A4FU69 1503 aa49.23■■■■■ 5.47
SYNPO-203ENST00000518872 RAPGEF6Q8TEU7 1601 aa49.19■■■■■ 5.46
SYNPO-203ENST00000518872 ATP10BO94823 1461 aa49.13■■■■■ 5.46
SYNPO-203ENST00000518872 FHOD3Q2V2M9 1422 aa49.12■■■■■ 5.45
SYNPO-203ENST00000518872 TEX14Q8IWB6 1497 aa49.06■■■■■ 5.44
SYNPO-203ENST00000518872 CFAP43Q8NDM7 1665 aa49.05■■■■■ 5.44
SYNPO-203ENST00000518872 RANGAP1P46060 587 aaPredicted RBP49.04■■■■■ 5.44
SYNPO-203ENST00000518872 UBTFP17480 764 aaKnown RBP49.01■■■■■ 5.44
SYNPO-203ENST00000518872 NUP153P49790 1475 aaKnown RBP48.99■■■■■ 5.43
SYNPO-203ENST00000518872 MAGI3Q5TCQ9 1506 aa48.93■■■■■ 5.42
SYNPO-203ENST00000518872 KCNH8Q96L42 1107 aa48.91■■■■■ 5.42
SYNPO-203ENST00000518872 CD109Q6YHK3 1445 aa48.91■■■■■ 5.42
SYNPO-203ENST00000518872 ARID3CA6NKF2 412 aa48.89■■■■■ 5.42
SYNPO-203ENST00000518872 EHMT2Q96KQ7 1210 aa48.84■■■■■ 5.41
SYNPO-203ENST00000518872 ARHGAP35Q9NRY4 1499 aa48.82■■■■■ 5.41
SYNPO-203ENST00000518872 COL17A1Q9UMD9 1497 aaPredicted RBP48.82■■■■■ 5.41
SYNPO-203ENST00000518872 ABCA9Q8IUA7 1624 aa48.8■■■■■ 5.4
SYNPO-203ENST00000518872 FMN1Q68DA7 1419 aa48.74■■■■■ 5.39
SYNPO-203ENST00000518872 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP48.7■■■■■ 5.39
SYNPO-203ENST00000518872 HNRNPUL2Q1KMD3 747 aaKnown RBP48.7■■■■■ 5.39
SYNPO-203ENST00000518872 AEBP2Q6ZN18 517 aaPredicted RBP48.65■■■■■ 5.38
SYNPO-203ENST00000518872 PLEKHD1A6NEE1 506 aa48.59■■■■■ 5.37
SYNPO-203ENST00000518872 HECW1Q76N89 1606 aa48.58■■■■■ 5.37
SYNPO-203ENST00000518872 PHLDB1Q86UU1 1377 aa48.54■■■■■ 5.36
SYNPO-203ENST00000518872 ARAP3Q8WWN8 1544 aa48.53■■■■■ 5.36
SYNPO-203ENST00000518872 CDK13Q14004 1512 aaKnown RBP48.52■■■■■ 5.36
SYNPO-203ENST00000518872 NEO1Q92859 1461 aa48.47■■■■■ 5.35
SYNPO-203ENST00000518872 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP48.4■■■■■ 5.34
SYNPO-203ENST00000518872 KDM4FA0A1W2PPD8 638 aa48.34■■■■■ 5.33
SYNPO-203ENST00000518872 TTC37Q6PGP7 1564 aa48.32■■■■■ 5.33
SYNPO-203ENST00000518872 LRRIQ1Q96JM4 1722 aa48.31■■■■■ 5.32
SYNPO-203ENST00000518872 ATP1B4Q9UN42 357 aaPredicted RBP48.29■■■■■ 5.32
SYNPO-203ENST00000518872 CASKIN1Q8WXD9 1431 aa48.29■■■■■ 5.32
SYNPO-203ENST00000518872 CLIP1P30622 1438 aa48.28■■■■■ 5.32
SYNPO-203ENST00000518872 CDK11AQ9UQ88 783 aaPredicted RBP48.27■■■■■ 5.32
SYNPO-203ENST00000518872 CFAP74Q9C0B2 1584 aa48.26■■■■■ 5.32
SYNPO-203ENST00000518872 PCF11O94913 1555 aaKnown RBP48.25■■■■■ 5.31
SYNPO-203ENST00000518872 FANCAO15360 1455 aa48.19■■■■■ 5.31
SYNPO-203ENST00000518872 CCDC18Q5T9S5 1454 aa48.18■■■■■ 5.3
SYNPO-203ENST00000518872 TROQ12816 1431 aaPredicted RBP48.18■■■■■ 5.3
SYNPO-203ENST00000518872 ADGRL1O94910 1474 aa48.17■■■■■ 5.3
SYNPO-203ENST00000518872 FYCO1Q9BQS8 1478 aa48.15■■■■■ 5.3
SYNPO-203ENST00000518872 FRMPD1Q5SYB0 1578 aa48.14■■■■■ 5.3
SYNPO-203ENST00000518872 AKNAQ7Z591 1439 aa48.14■■■■■ 5.3
SYNPO-203ENST00000518872 KIF14Q15058 1648 aa48.13■■■■■ 5.3
SYNPO-203ENST00000518872 PLCH2O75038 1416 aa48.12■■■■■ 5.29
SYNPO-203ENST00000518872 MYO5CQ9NQX4 1742 aa48.08■■■■■ 5.29
SYNPO-203ENST00000518872 RAPGEF3O95398 923 aa48.08■■■■■ 5.29
SYNPO-203ENST00000518872 RICTORQ6R327 1708 aa48.07■■■■■ 5.29
SYNPO-203ENST00000518872 DENND4BO75064 1496 aaPredicted RBP48.05■■■■■ 5.28
SYNPO-203ENST00000518872 ZMYM4Q5VZL5 1548 aa47.92■■■■■ 5.26
SYNPO-203ENST00000518872 CEP162Q5TB80 1403 aa47.9■■■■■ 5.26
SYNPO-203ENST00000518872 EFCAB2Q5VUJ9 269 aa47.88■■■■■ 5.26
SYNPO-203ENST00000518872 ARHGEF40Q8TER5 1519 aa47.86■■■■■ 5.25
SYNPO-203ENST00000518872 SCAPERQ9BY12 1400 aa47.83■■■■■ 5.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms