RNA–Protein interactions for RNA: ENST00000515881.5

DDR1-280, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 3

Gene DDR1, Length 956 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-280	ENST00000515881	JPH4	Q96JJ6	628 aa		33.71	■■■□□ 2.99
DDR1-280	ENST00000515881	PRG4	Q92954	1404 aa	Predicted RBP	33.7	■■■□□ 2.99
DDR1-280	ENST00000515881	CARMIL1	Q5VZK9	1371 aa		33.63	■■■□□ 2.97
DDR1-280	ENST00000515881	KIAA0586	Q9BVV6	1533 aa		33.61	■■■□□ 2.97
DDR1-280	ENST00000515881	RAPGEF2	Q9Y4G8	1499 aa		33.37	■■■□□ 2.93
DDR1-280	ENST00000515881	IQGAP2	Q13576	1575 aa		33.32	■■■□□ 2.92
DDR1-280	ENST00000515881	CARMIL2	Q6F5E8	1435 aa		33.27	■■■□□ 2.92
DDR1-280	ENST00000515881	PTPRG	P23470	1445 aa		33.23	■■■□□ 2.91
DDR1-280	ENST00000515881	ADCY10	Q96PN6	1610 aa		33.23	■■■□□ 2.91
DDR1-280	ENST00000515881	NPM1	P06748	294 aa	Known RBP eCLIP	33.22	■■■□□ 2.91
DDR1-280	ENST00000515881	TNIK	Q9UKE5	1360 aa		33.21	■■■□□ 2.91
DDR1-280	ENST00000515881	DISP1	Q96F81	1524 aa		33.15	■■■□□ 2.9
DDR1-280	ENST00000515881	MAPKBP1	O60336	1514 aa		33.14	■■■□□ 2.9
DDR1-280	ENST00000515881	UGGT2	Q9NYU1	1516 aa		33.14	■■■□□ 2.9
DDR1-280	ENST00000515881	PRX	Q9BXM0	1461 aa		33.14	■■■□□ 2.9
DDR1-280	ENST00000515881	TTBK1	Q5TCY1	1321 aa	Predicted RBP	33.14	■■■□□ 2.9
DDR1-280	ENST00000515881	ABCC10	Q5T3U5	1492 aa		33.07	■■■□□ 2.88
DDR1-280	ENST00000515881	KIF13A	Q9H1H9	1805 aa		33.05	■■■□□ 2.88
DDR1-280	ENST00000515881	FAM69C	Q0P6D2	419 aa		33.02	■■■□□ 2.88
DDR1-280	ENST00000515881	KIAA0556	O60303	1618 aa		33.01	■■■□□ 2.87
DDR1-280	ENST00000515881	ABCC2	Q92887	1545 aa		33	■■■□□ 2.87
DDR1-280	ENST00000515881	CTTNBP2	Q8WZ74	1663 aa		33	■■■□□ 2.87
DDR1-280	ENST00000515881	UHRF1BP1L	A0JNW5	1464 aa		32.99	■■■□□ 2.87
DDR1-280	ENST00000515881	UACA	Q9BZF9	1416 aa		32.99	■■■□□ 2.87
DDR1-280	ENST00000515881	DIP2B	Q9P265	1576 aa		32.98	■■■□□ 2.87
DDR1-280	ENST00000515881	CSRNP3	Q8WYN3	585 aa		32.97	■■■□□ 2.87
DDR1-280	ENST00000515881	GOLGA3	Q08378	1498 aa		32.92	■■■□□ 2.86
DDR1-280	ENST00000515881	EEA1	Q15075	1411 aa		32.91	■■■□□ 2.86
DDR1-280	ENST00000515881	ASXL2	Q76L83	1435 aa		32.85	■■■□□ 2.85
DDR1-280	ENST00000515881	KDM5B	Q9UGL1	1544 aa		32.83	■■■□□ 2.85
DDR1-280	ENST00000515881	PLB1	Q6P1J6	1458 aa		32.83	■■■□□ 2.85
DDR1-280	ENST00000515881	FAM9A	Q8IZU1	332 aa	Predicted RBP	32.73	■■■□□ 2.83
DDR1-280	ENST00000515881	ZCCHC11	Q5TAX3	1644 aa	Known RBP	32.72	■■■□□ 2.83
DDR1-280	ENST00000515881	ABCA8	O94911	1581 aa		32.7	■■■□□ 2.82
DDR1-280	ENST00000515881	GLI2	P10070	1586 aa		32.7	■■■□□ 2.82
DDR1-280	ENST00000515881	CHIC1	Q5VXU3	224 aa		32.69	■■■□□ 2.82
DDR1-280	ENST00000515881	EPRS	P07814	1512 aa	Known RBP	32.65	■■■□□ 2.82
DDR1-280	ENST00000515881	P3H3	Q8IVL6	736 aa		32.64	■■■□□ 2.82
DDR1-280	ENST00000515881	SAMD9	Q5K651	1589 aa		32.62	■■■□□ 2.81
DDR1-280	ENST00000515881	TSPOAP1	O95153	1857 aa		32.61	■■■□□ 2.81
DDR1-280	ENST00000515881	WDR7	Q9Y4E6	1490 aa		32.6	■■■□□ 2.81
DDR1-280	ENST00000515881	KDM6B	O15054	1643 aa		32.59	■■■□□ 2.81
DDR1-280	ENST00000515881	KIF21B	O75037	1637 aa		32.59	■■■□□ 2.81
DDR1-280	ENST00000515881	PPRC1	Q5VV67	1664 aa	Known RBP	32.52	■■■□□ 2.8
DDR1-280	ENST00000515881	MAP3K4	Q9Y6R4	1608 aa		32.51	■■■□□ 2.79
DDR1-280	ENST00000515881	RANGAP1	P46060	587 aa	Predicted RBP	32.49	■■■□□ 2.79
DDR1-280	ENST00000515881	AEBP2	Q6ZN18	517 aa	Predicted RBP	32.45	■■■□□ 2.79
DDR1-280	ENST00000515881	ATP10B	O94823	1461 aa		32.43	■■■□□ 2.78
DDR1-280	ENST00000515881	TEX14	Q8IWB6	1497 aa		32.43	■■■□□ 2.78
DDR1-280	ENST00000515881	ARID3C	A6NKF2	412 aa		32.43	■■■□□ 2.78
DDR1-280	ENST00000515881	FHOD3	Q2V2M9	1422 aa		32.43	■■■□□ 2.78
DDR1-280	ENST00000515881	KCNH8	Q96L42	1107 aa		32.41	■■■□□ 2.78
DDR1-280	ENST00000515881	RAPGEF6	Q8TEU7	1601 aa		32.4	■■■□□ 2.78
DDR1-280	ENST00000515881	EFCAB5	A4FU69	1503 aa		32.38	■■■□□ 2.77
DDR1-280	ENST00000515881	EHMT2	Q96KQ7	1210 aa		32.35	■■■□□ 2.77
DDR1-280	ENST00000515881	CD109	Q6YHK3	1445 aa		32.34	■■■□□ 2.77
DDR1-280	ENST00000515881	UBTF	P17480	764 aa	Known RBP	32.34	■■■□□ 2.77
DDR1-280	ENST00000515881	COL17A1	Q9UMD9	1497 aa	Predicted RBP	32.33	■■■□□ 2.77
DDR1-280	ENST00000515881	NUP153	P49790	1475 aa	Known RBP	32.32	■■■□□ 2.76
DDR1-280	ENST00000515881	MAGI3	Q5TCQ9	1506 aa		32.31	■■■□□ 2.76
DDR1-280	ENST00000515881	CFAP43	Q8NDM7	1665 aa		32.31	■■■□□ 2.76
DDR1-280	ENST00000515881	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	32.25	■■■□□ 2.75
DDR1-280	ENST00000515881	HNRNPUL2	Q1KMD3	747 aa	Known RBP	32.25	■■■□□ 2.75
DDR1-280	ENST00000515881	ABCA9	Q8IUA7	1624 aa		32.17	■■■□□ 2.74
DDR1-280	ENST00000515881	ARHGAP35	Q9NRY4	1499 aa		32.15	■■■□□ 2.74
DDR1-280	ENST00000515881	KDM4F	A0A1W2PPD8	638 aa		32.11	■■■□□ 2.73
DDR1-280	ENST00000515881	PLEKHD1	A6NEE1	506 aa		32.1	■■■□□ 2.73
DDR1-280	ENST00000515881	FMN1	Q68DA7	1419 aa		32.09	■■■□□ 2.73
DDR1-280	ENST00000515881	ARAP3	Q8WWN8	1544 aa		32.05	■■■□□ 2.72
DDR1-280	ENST00000515881	PHLDB1	Q86UU1	1377 aa		32.04	■■■□□ 2.72
DDR1-280	ENST00000515881	CDK13	Q14004	1512 aa	Known RBP	32.03	■■■□□ 2.72
DDR1-280	ENST00000515881	NEO1	Q92859	1461 aa		31.99	■■■□□ 2.71
DDR1-280	ENST00000515881	HECW1	Q76N89	1606 aa		31.99	■■■□□ 2.71
DDR1-280	ENST00000515881	ATP1B4	Q9UN42	357 aa	Predicted RBP	31.97	■■■□□ 2.71
DDR1-280	ENST00000515881	ADGRL1	O94910	1474 aa		31.96	■■■□□ 2.71
DDR1-280	ENST00000515881	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	31.94	■■■□□ 2.7	6e-7	■■■■□ 21.9
DDR1-280	ENST00000515881	TTC37	Q6PGP7	1564 aa		31.88	■■■□□ 2.69
DDR1-280	ENST00000515881	RAPGEF3	O95398	923 aa		31.86	■■■□□ 2.69
DDR1-280	ENST00000515881	CDK11A	Q9UQ88	783 aa	Predicted RBP	31.85	■■■□□ 2.69
DDR1-280	ENST00000515881	FANCA	O15360	1455 aa		31.84	■■■□□ 2.69
DDR1-280	ENST00000515881	AKNA	Q7Z591	1439 aa		31.81	■■■□□ 2.68
DDR1-280	ENST00000515881	CLIP1	P30622	1438 aa		31.79	■■■□□ 2.68
DDR1-280	ENST00000515881	FRMPD1	Q5SYB0	1578 aa		31.79	■■■□□ 2.68
DDR1-280	ENST00000515881	CASKIN1	Q8WXD9	1431 aa		31.79	■■■□□ 2.68
DDR1-280	ENST00000515881	CFAP74	Q9C0B2	1584 aa		31.79	■■■□□ 2.68
DDR1-280	ENST00000515881	PCF11	O94913	1555 aa	Known RBP	31.77	■■■□□ 2.68
DDR1-280	ENST00000515881	PLCH2	O75038	1416 aa		31.76	■■■□□ 2.68
DDR1-280	ENST00000515881	TRO	Q12816	1431 aa	Predicted RBP	31.76	■■■□□ 2.68
DDR1-280	ENST00000515881	DENND4B	O75064	1496 aa	Predicted RBP	31.76	■■■□□ 2.67
DDR1-280	ENST00000515881	LRRIQ1	Q96JM4	1722 aa		31.72	■■■□□ 2.67
DDR1-280	ENST00000515881	CCDC18	Q5T9S5	1454 aa		31.72	■■■□□ 2.67
DDR1-280	ENST00000515881	KIF14	Q15058	1648 aa		31.71	■■■□□ 2.67
DDR1-280	ENST00000515881	FYCO1	Q9BQS8	1478 aa		31.68	■■■□□ 2.66
DDR1-280	ENST00000515881	RICTOR	Q6R327	1708 aa		31.66	■■■□□ 2.66
DDR1-280	ENST00000515881	EFCAB2	Q5VUJ9	269 aa		31.63	■■■□□ 2.65
DDR1-280	ENST00000515881	SCAPER	Q9BY12	1400 aa		31.62	■■■□□ 2.65
DDR1-280	ENST00000515881	MYO5C	Q9NQX4	1742 aa		31.62	■■■□□ 2.65
DDR1-280	ENST00000515881	ZMYM4	Q5VZL5	1548 aa		31.61	■■■□□ 2.65
DDR1-280	ENST00000515881	ARHGEF40	Q8TER5	1519 aa		31.61	■■■□□ 2.65
DDR1-280	ENST00000515881	POGZ	Q7Z3K3	1410 aa		31.58	■■■□□ 2.65

Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms