RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 PRG4Q92954 1404 aaPredicted RBP30.27■■■□□ 2.44
DDX41-217ENST00000515562 JPH4Q96JJ6 628 aa30.24■■■□□ 2.43
DDX41-217ENST00000515562 KIAA0586Q9BVV6 1533 aa30.2■■■□□ 2.42
DDX41-217ENST00000515562 CARMIL1Q5VZK9 1371 aa30.15■■■□□ 2.42
DDX41-217ENST00000515562 IQGAP2Q13576 1575 aa29.98■■■□□ 2.39
DDX41-217ENST00000515562 RAPGEF2Q9Y4G8 1499 aa29.94■■■□□ 2.38
DDX41-217ENST00000515562 ADCY10Q96PN6 1610 aa29.93■■■□□ 2.38
DDX41-217ENST00000515562 CARMIL2Q6F5E8 1435 aa29.9■■■□□ 2.38
DDX41-217ENST00000515562 MAPKBP1O60336 1514 aa29.88■■■□□ 2.37
DDX41-217ENST00000515562 NPM1P06748 294 aaKnown RBP eCLIP29.87■■■□□ 2.37
DDX41-217ENST00000515562 KIF13AQ9H1H9 1805 aa29.87■■■□□ 2.37
DDX41-217ENST00000515562 PTPRGP23470 1445 aa29.83■■■□□ 2.37
DDX41-217ENST00000515562 TNIKQ9UKE5 1360 aa29.82■■■□□ 2.36
DDX41-217ENST00000515562 UGGT2Q9NYU1 1516 aa29.78■■■□□ 2.36
DDX41-217ENST00000515562 ABCC10Q5T3U5 1492 aa29.77■■■□□ 2.36
DDX41-217ENST00000515562 DISP1Q96F81 1524 aa29.76■■■□□ 2.36
DDX41-217ENST00000515562 DIP2BQ9P265 1576 aa29.74■■■□□ 2.35
DDX41-217ENST00000515562 CTTNBP2Q8WZ74 1663 aa29.74■■■□□ 2.35
DDX41-217ENST00000515562 KIAA0556O60303 1618 aa29.7■■■□□ 2.34
DDX41-217ENST00000515562 PRXQ9BXM0 1461 aa29.69■■■□□ 2.34
DDX41-217ENST00000515562 ABCC2Q92887 1545 aa29.69■■■□□ 2.34
DDX41-217ENST00000515562 TTBK1Q5TCY1 1321 aaPredicted RBP29.68■■■□□ 2.34
DDX41-217ENST00000515562 FAM69CQ0P6D2 419 aa29.67■■■□□ 2.34
DDX41-217ENST00000515562 UHRF1BP1LA0JNW5 1464 aa29.67■■■□□ 2.34
DDX41-217ENST00000515562 UACAQ9BZF9 1416 aa29.63■■■□□ 2.33
DDX41-217ENST00000515562 GOLGA3Q08378 1498 aa29.58■■■□□ 2.33
DDX41-217ENST00000515562 PLB1Q6P1J6 1458 aa29.55■■■□□ 2.32
DDX41-217ENST00000515562 ASXL2Q76L83 1435 aa29.54■■■□□ 2.32
DDX41-217ENST00000515562 KDM5BQ9UGL1 1544 aa29.52■■■□□ 2.32
DDX41-217ENST00000515562 EEA1Q15075 1411 aa29.51■■■□□ 2.31
DDX41-217ENST00000515562 ZCCHC11Q5TAX3 1644 aaKnown RBP29.47■■■□□ 2.31
DDX41-217ENST00000515562 CSRNP3Q8WYN3 585 aa29.46■■■□□ 2.31
DDX41-217ENST00000515562 GLI2P10070 1586 aa29.46■■■□□ 2.31
DDX41-217ENST00000515562 TSPOAP1O95153 1857 aa29.46■■■□□ 2.31
DDX41-217ENST00000515562 KDM6BO15054 1643 aa29.42■■■□□ 2.3
DDX41-217ENST00000515562 ABCA8O94911 1581 aa29.39■■■□□ 2.29
DDX41-217ENST00000515562 EPRSP07814 1512 aaKnown RBP29.36■■■□□ 2.29
DDX41-217ENST00000515562 PPRC1Q5VV67 1664 aaKnown RBP29.33■■■□□ 2.29
DDX41-217ENST00000515562 WDR7Q9Y4E6 1490 aa29.32■■■□□ 2.28
DDX41-217ENST00000515562 MAP3K4Q9Y6R4 1608 aa29.31■■■□□ 2.28
DDX41-217ENST00000515562 SAMD9Q5K651 1589 aa29.31■■■□□ 2.28
DDX41-217ENST00000515562 AEBP2Q6ZN18 517 aaPredicted RBP29.3■■■□□ 2.28
DDX41-217ENST00000515562 FAM9AQ8IZU1 332 aaPredicted RBP29.28■■■□□ 2.28
DDX41-217ENST00000515562 KIF21BO75037 1637 aa29.25■■■□□ 2.27
DDX41-217ENST00000515562 TEX14Q8IWB6 1497 aa29.23■■■□□ 2.27
DDX41-217ENST00000515562 P3H3Q8IVL6 736 aa29.19■■■□□ 2.26
DDX41-217ENST00000515562 CFAP43Q8NDM7 1665 aa29.15■■■□□ 2.26
DDX41-217ENST00000515562 RAPGEF6Q8TEU7 1601 aa29.14■■■□□ 2.26
DDX41-217ENST00000515562 CHIC1Q5VXU3 224 aa29.11■■■□□ 2.25
DDX41-217ENST00000515562 EFCAB5A4FU69 1503 aa29.1■■■□□ 2.25
DDX41-217ENST00000515562 ATP10BO94823 1461 aa29.1■■■□□ 2.25
DDX41-217ENST00000515562 MAGI3Q5TCQ9 1506 aa29.08■■■□□ 2.25
DDX41-217ENST00000515562 CD109Q6YHK3 1445 aa29.07■■■□□ 2.24
DDX41-217ENST00000515562 FHOD3Q2V2M9 1422 aa29.05■■■□□ 2.24
DDX41-217ENST00000515562 KCNH8Q96L42 1107 aa29.05■■■□□ 2.24
DDX41-217ENST00000515562 COL17A1Q9UMD9 1497 aaPredicted RBP29.04■■■□□ 2.24
DDX41-217ENST00000515562 RANGAP1P46060 587 aaPredicted RBP29.03■■■□□ 2.24
DDX41-217ENST00000515562 ARID3CA6NKF2 412 aa29.02■■■□□ 2.24
DDX41-217ENST00000515562 NUP153P49790 1475 aaKnown RBP29■■■□□ 2.23
DDX41-217ENST00000515562 ABCA9Q8IUA7 1624 aa28.97■■■□□ 2.23
DDX41-217ENST00000515562 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.91■■■□□ 2.22
DDX41-217ENST00000515562 UBTFP17480 764 aaKnown RBP28.91■■■□□ 2.22
DDX41-217ENST00000515562 HNRNPUL2Q1KMD3 747 aaKnown RBP28.91■■■□□ 2.22
DDX41-217ENST00000515562 KDM4FA0A1W2PPD8 638 aa28.88■■■□□ 2.21
DDX41-217ENST00000515562 ARAP3Q8WWN8 1544 aa28.84■■■□□ 2.21
DDX41-217ENST00000515562 EHMT2Q96KQ7 1210 aa28.84■■■□□ 2.21
DDX41-217ENST00000515562 PHLDB1Q86UU1 1377 aa28.83■■■□□ 2.21
DDX41-217ENST00000515562 ADGRL1O94910 1474 aa28.81■■■□□ 2.2
DDX41-217ENST00000515562 FMN1Q68DA7 1419 aa28.81■■■□□ 2.2
DDX41-217ENST00000515562 ARHGAP35Q9NRY4 1499 aa28.79■■■□□ 2.2
DDX41-217ENST00000515562 NEO1Q92859 1461 aa28.78■■■□□ 2.2
DDX41-217ENST00000515562 PLEKHD1A6NEE1 506 aa28.78■■■□□ 2.2
DDX41-217ENST00000515562 HECW1Q76N89 1606 aa28.76■■■□□ 2.2
DDX41-217ENST00000515562 CDK13Q14004 1512 aaKnown RBP28.74■■■□□ 2.19
DDX41-217ENST00000515562 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.69■■■□□ 2.18
DDX41-217ENST00000515562 CFAP74Q9C0B2 1584 aa28.68■■■□□ 2.18
DDX41-217ENST00000515562 TTC37Q6PGP7 1564 aa28.67■■■□□ 2.18
DDX41-217ENST00000515562 FRMPD1Q5SYB0 1578 aa28.62■■■□□ 2.17
DDX41-217ENST00000515562 FANCAO15360 1455 aa28.62■■■□□ 2.17
DDX41-217ENST00000515562 ATP1B4Q9UN42 357 aaPredicted RBP28.6■■■□□ 2.17
DDX41-217ENST00000515562 RAPGEF3O95398 923 aa28.58■■■□□ 2.17
DDX41-217ENST00000515562 CDK11AQ9UQ88 783 aaPredicted RBP28.58■■■□□ 2.17
DDX41-217ENST00000515562 AKNAQ7Z591 1439 aa28.57■■■□□ 2.16
DDX41-217ENST00000515562 DENND4BO75064 1496 aaPredicted RBP28.55■■■□□ 2.16
DDX41-217ENST00000515562 RICTORQ6R327 1708 aa28.55■■■□□ 2.16
DDX41-217ENST00000515562 KIF14Q15058 1648 aa28.53■■■□□ 2.16
DDX41-217ENST00000515562 LRRIQ1Q96JM4 1722 aa28.52■■■□□ 2.16
DDX41-217ENST00000515562 PCF11O94913 1555 aaKnown RBP28.52■■■□□ 2.16
DDX41-217ENST00000515562 MYO5CQ9NQX4 1742 aa28.51■■■□□ 2.15
DDX41-217ENST00000515562 PLCH2O75038 1416 aa28.51■■■□□ 2.15
DDX41-217ENST00000515562 TROQ12816 1431 aaPredicted RBP28.51■■■□□ 2.15
DDX41-217ENST00000515562 ARHGEF40Q8TER5 1519 aa28.5■■■□□ 2.15
DDX41-217ENST00000515562 CLIP1P30622 1438 aa28.5■■■□□ 2.15
DDX41-217ENST00000515562 CASKIN1Q8WXD9 1431 aa28.5■■■□□ 2.15
DDX41-217ENST00000515562 CCDC18Q5T9S5 1454 aa28.49■■■□□ 2.15
DDX41-217ENST00000515562 ZMYM4Q5VZL5 1548 aa28.47■■■□□ 2.15
DDX41-217ENST00000515562 FYCO1Q9BQS8 1478 aa28.44■■■□□ 2.14
DDX41-217ENST00000515562 ADAMTSL3P82987 1691 aa28.4■■■□□ 2.14
DDX41-217ENST00000515562 POGZQ7Z3K3 1410 aa28.4■■■□□ 2.14
DDX41-217ENST00000515562 MAGI2Q86UL8 1455 aa28.4■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms