RNA–Protein interactions for RNA: ENST00000515527.1

SMAD1-216, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 632 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-216ENST00000515527 GRIN2AQ12879 1464 aa25.56■■□□□ 1.68
SMAD1-216ENST00000515527 NUP160Q12769 1436 aa25.5■■□□□ 1.67
SMAD1-216ENST00000515527 ILDR2Q71H61 639 aa25.45■■□□□ 1.66
SMAD1-216ENST00000515527 PRG4Q92954 1404 aaPredicted RBP25.45■■□□□ 1.66
SMAD1-216ENST00000515527 CUX1P39880 1505 aa25.42■■□□□ 1.66
SMAD1-216ENST00000515527 ABCA5Q8WWZ7 1642 aa25.41■■□□□ 1.66
SMAD1-216ENST00000515527 DISP3Q9P2K9 1392 aa25.35■■□□□ 1.65
SMAD1-216ENST00000515527 ADCY10Q96PN6 1610 aa25.35■■□□□ 1.65
SMAD1-216ENST00000515527 ADAMTS12P58397 1594 aa25.34■■□□□ 1.65
SMAD1-216ENST00000515527 JPH4Q96JJ6 628 aa25.3■■□□□ 1.64
SMAD1-216ENST00000515527 ABCA10Q8WWZ4 1543 aa25.3■■□□□ 1.64
SMAD1-216ENST00000515527 TOP2BQ02880 1626 aa25.23■■□□□ 1.63
SMAD1-216ENST00000515527 PPRC1Q5VV67 1664 aaKnown RBP25.21■■□□□ 1.63
SMAD1-216ENST00000515527 FHAD1B1AJZ9 1412 aa25.2■■□□□ 1.63
SMAD1-216ENST00000515527 COL17A1Q9UMD9 1497 aaPredicted RBP25.15■■□□□ 1.62
SMAD1-216ENST00000515527 GLI2P10070 1586 aa25.05■■□□□ 1.6
SMAD1-216ENST00000515527 RUSC2Q8N2Y8 1516 aa25.02■■□□□ 1.6
SMAD1-216ENST00000515527 ASXL2Q76L83 1435 aa24.99■■□□□ 1.59
SMAD1-216ENST00000515527 PLB1Q6P1J6 1458 aa24.97■■□□□ 1.59
SMAD1-216ENST00000515527 TEX14Q8IWB6 1497 aa24.96■■□□□ 1.59
SMAD1-216ENST00000515527 ERICH3Q5RHP9 1530 aa24.96■■□□□ 1.59
SMAD1-216ENST00000515527 SPATA31D1Q6ZQQ2 1576 aa24.94■■□□□ 1.58
SMAD1-216ENST00000515527 CERKQ8TCT0 537 aa24.93■■□□□ 1.58
SMAD1-216ENST00000515527 WRNQ14191 1432 aaPredicted RBP eCLIP24.93■■□□□ 1.58
SMAD1-216ENST00000515527 TTBK1Q5TCY1 1321 aaPredicted RBP24.9■■□□□ 1.58
SMAD1-216ENST00000515527 ABCC2Q92887 1545 aa24.9■■□□□ 1.58
SMAD1-216ENST00000515527 MAP3K4Q9Y6R4 1608 aa24.89■■□□□ 1.57
SMAD1-216ENST00000515527 KIF21BO75037 1637 aa24.86■■□□□ 1.57
SMAD1-216ENST00000515527 PTPRGP23470 1445 aa24.85■■□□□ 1.57
SMAD1-216ENST00000515527 PCF11O94913 1555 aaKnown RBP24.84■■□□□ 1.57
SMAD1-216ENST00000515527 CUL7Q14999 1698 aa24.84■■□□□ 1.57
SMAD1-216ENST00000515527 PTPRMP28827 1452 aa24.83■■□□□ 1.56
SMAD1-216ENST00000515527 EPRSP07814 1512 aaKnown RBP24.81■■□□□ 1.56
SMAD1-216ENST00000515527 KIAA0586Q9BVV6 1533 aa24.72■■□□□ 1.55
SMAD1-216ENST00000515527 ADAMTSL3P82987 1691 aa24.69■■□□□ 1.54
SMAD1-216ENST00000515527 HSPA2P54652 639 aa24.67■■□□□ 1.54
SMAD1-216ENST00000515527 TNIKQ9UKE5 1360 aa24.65■■□□□ 1.54
SMAD1-216ENST00000515527 UHRF1BP1LA0JNW5 1464 aa24.63■■□□□ 1.53
SMAD1-216ENST00000515527 BIVM-ERCC5R4GMW8 1640 aa24.59■■□□□ 1.53
SMAD1-216ENST00000515527 CARMIL2Q6F5E8 1435 aa24.58■■□□□ 1.53
SMAD1-216ENST00000515527 UACAQ9BZF9 1416 aa24.58■■□□□ 1.53
SMAD1-216ENST00000515527 KDM5BQ9UGL1 1544 aa24.55■■□□□ 1.52
SMAD1-216ENST00000515527 ZCCHC11Q5TAX3 1644 aaKnown RBP24.53■■□□□ 1.52
SMAD1-216ENST00000515527 MADDQ8WXG6 1647 aa24.53■■□□□ 1.52
SMAD1-216ENST00000515527 CD109Q6YHK3 1445 aa24.52■■□□□ 1.52
SMAD1-216ENST00000515527 MAGI3Q5TCQ9 1506 aa24.51■■□□□ 1.51
SMAD1-216ENST00000515527 BCORL1Q5H9F3 1711 aa24.49■■□□□ 1.51
SMAD1-216ENST00000515527 ARID4BQ4LE39 1312 aaPredicted RBP24.48■■□□□ 1.51
SMAD1-216ENST00000515527 WDR7Q9Y4E6 1490 aa24.47■■□□□ 1.51
SMAD1-216ENST00000515527 CFAP43Q8NDM7 1665 aa24.46■■□□□ 1.51
SMAD1-216ENST00000515527 PLPPR3Q6T4P5 718 aa24.46■■□□□ 1.51
SMAD1-216ENST00000515527 RIMS1Q86UR5 1692 aaKnown RBP24.44■■□□□ 1.5
SMAD1-216ENST00000515527 KCNH8Q96L42 1107 aa24.4■■□□□ 1.5
SMAD1-216ENST00000515527 ARAP3Q8WWN8 1544 aa24.37■■□□□ 1.49
SMAD1-216ENST00000515527 IQGAP2Q13576 1575 aa24.29■■□□□ 1.48
SMAD1-216ENST00000515527 DMRT2Q9Y5R5 561 aa24.27■■□□□ 1.48
SMAD1-216ENST00000515527 DISP1Q96F81 1524 aa24.26■■□□□ 1.47
SMAD1-216ENST00000515527 RAPGEF3O95398 923 aa24.26■■□□□ 1.47
SMAD1-216ENST00000515527 IGF1RP08069 1367 aa24.26■■□□□ 1.47
SMAD1-216ENST00000515527 YEATS2Q9ULM3 1422 aa24.21■■□□□ 1.47
SMAD1-216ENST00000515527 STRCQ7RTU9 1775 aa24.16■■□□□ 1.46
SMAD1-216ENST00000515527 PHLDB1Q86UU1 1377 aa24.15■■□□□ 1.46
SMAD1-216ENST00000515527 PREX1Q8TCU6 1659 aa24.1■■□□□ 1.45
SMAD1-216ENST00000515527 POGZQ7Z3K3 1410 aa24.1■■□□□ 1.45
SMAD1-216ENST00000515527 CARMIL1Q5VZK9 1371 aa24.09■■□□□ 1.45
SMAD1-216ENST00000515527 KIF27Q86VH2 1401 aa24.09■■□□□ 1.45
SMAD1-216ENST00000515527 IQSEC2Q5JU85 1478 aa24.08■■□□□ 1.45
SMAD1-216ENST00000515527 KIAA0556O60303 1618 aa24.08■■□□□ 1.45
SMAD1-216ENST00000515527 FRMPD1Q5SYB0 1578 aa24.08■■□□□ 1.44
SMAD1-216ENST00000515527 ARHGEF40Q8TER5 1519 aa24.07■■□□□ 1.44
SMAD1-216ENST00000515527 FER1L4A9Z1Z3 1794 aa24.04■■□□□ 1.44
SMAD1-216ENST00000515527 FANCAO15360 1455 aa24.03■■□□□ 1.44
SMAD1-216ENST00000515527 UGGT2Q9NYU1 1516 aa24.03■■□□□ 1.44
SMAD1-216ENST00000515527 LTBP4Q8N2S1 1624 aa24.02■■□□□ 1.44
SMAD1-216ENST00000515527 MLECQ14165 292 aa24.02■■□□□ 1.44
SMAD1-216ENST00000515527 MED1Q15648 1581 aaPredicted RBP24.02■■□□□ 1.44
SMAD1-216ENST00000515527 TTC37Q6PGP7 1564 aa24.01■■□□□ 1.43
SMAD1-216ENST00000515527 NEO1Q92859 1461 aa24■■□□□ 1.43
SMAD1-216ENST00000515527 UBAP1LF5GYI3 381 aa24■■□□□ 1.43
SMAD1-216ENST00000515527 PTPRTO14522 1441 aa24■■□□□ 1.43
SMAD1-216ENST00000515527 ABCA9Q8IUA7 1624 aa23.95■■□□□ 1.43
SMAD1-216ENST00000515527 ABCA8O94911 1581 aa23.94■■□□□ 1.42
SMAD1-216ENST00000515527 AKNAQ7Z591 1439 aa23.93■■□□□ 1.42
SMAD1-216ENST00000515527 PHF23Q9BUL5 403 aaPredicted RBP23.93■■□□□ 1.42
SMAD1-216ENST00000515527 UHRF1BP1Q6BDS2 1440 aa23.93■■□□□ 1.42
SMAD1-216ENST00000515527 SIGLEC1Q9BZZ2 1709 aa23.91■■□□□ 1.42
SMAD1-216ENST00000515527 ARID3CA6NKF2 412 aa23.9■■□□□ 1.42
SMAD1-216ENST00000515527 CEBPAP49715 358 aaPredicted RBP23.9■■□□□ 1.42
SMAD1-216ENST00000515527 RICTORQ6R327 1708 aa23.87■■□□□ 1.41
SMAD1-216ENST00000515527 DENND4BO75064 1496 aaPredicted RBP23.87■■□□□ 1.41
SMAD1-216ENST00000515527 SETD1BQ9UPS6 1966 aaKnown RBP23.84■■□□□ 1.41
SMAD1-216ENST00000515527 ZFYVE16Q7Z3T8 1539 aa23.82■■□□□ 1.4
SMAD1-216ENST00000515527 HSPA1LP34931 641 aa23.8■■□□□ 1.4
SMAD1-216ENST00000515527 SCAF1Q9H7N4 1312 aaKnown RBP23.8■■□□□ 1.4
SMAD1-216ENST00000515527 EFCAB5A4FU69 1503 aa23.79■■□□□ 1.4
SMAD1-216ENST00000515527 FHOD3Q2V2M9 1422 aa23.78■■□□□ 1.4
SMAD1-216ENST00000515527 ARHGEF12Q9NZN5 1544 aa23.78■■□□□ 1.4
SMAD1-216ENST00000515527 ATP10BO94823 1461 aa23.75■■□□□ 1.39
SMAD1-216ENST00000515527 GOLGA3Q08378 1498 aa23.75■■□□□ 1.39
SMAD1-216ENST00000515527 ZMYM4Q5VZL5 1548 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms