RNA–Protein interactions for RNA: ENST00000515351.1

PCDH1-208, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 2,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-208ENST00000515351 FHAD1B1AJZ9 1412 aa22.17■■□□□ 1.14
PCDH1-208ENST00000515351 CTTNBP2Q8WZ74 1663 aa22.16■■□□□ 1.14
PCDH1-208ENST00000515351 NEUROD1Q13562 356 aa22.15■■□□□ 1.14
PCDH1-208ENST00000515351 LRRC9Q6ZRR7 1453 aa22.14■■□□□ 1.14
PCDH1-208ENST00000515351 PCF11O94913 1555 aaKnown RBP22.14■■□□□ 1.14
PCDH1-208ENST00000515351 CENPBP07199 599 aaPredicted RBP22.13■■□□□ 1.13
PCDH1-208ENST00000515351 EFCAB5A4FU69 1503 aa22.12■■□□□ 1.13
PCDH1-208ENST00000515351 URB2Q14146 1524 aaKnown RBP22.1■■□□□ 1.13
PCDH1-208ENST00000515351 ABCA5Q8WWZ7 1642 aa22.05■■□□□ 1.12
PCDH1-208ENST00000515351 FYCO1Q9BQS8 1478 aa22.05■■□□□ 1.12
PCDH1-208ENST00000515351 FHOD3Q2V2M9 1422 aa22.04■■□□□ 1.12
PCDH1-208ENST00000515351 PHLDB1Q86UU1 1377 aa22.02■■□□□ 1.12
PCDH1-208ENST00000515351 AQRO60306 1485 aaKnown RBP eCLIP22.02■■□□□ 1.12
PCDH1-208ENST00000515351 ITGAEP38570 1179 aa22.01■■□□□ 1.11
PCDH1-208ENST00000515351 P3H3Q8IVL6 736 aa22.01■■□□□ 1.11
PCDH1-208ENST00000515351 CASKIN1Q8WXD9 1431 aa22■■□□□ 1.11
PCDH1-208ENST00000515351 MIER1Q8N108 512 aa22■■□□□ 1.11
PCDH1-208ENST00000515351 KIF21AQ7Z4S6 1674 aa21.99■■□□□ 1.11
PCDH1-208ENST00000515351 RAB3GAP2Q9H2M9 1393 aa21.98■■□□□ 1.11
PCDH1-208ENST00000515351 PDS5BQ9NTI5 1447 aa21.98■■□□□ 1.11
PCDH1-208ENST00000515351 GAPVD1Q14C86 1478 aa21.94■■□□□ 1.1
PCDH1-208ENST00000515351 SAMD9Q5K651 1589 aa21.93■■□□□ 1.1
PCDH1-208ENST00000515351 SETD5Q9C0A6 1442 aa21.93■■□□□ 1.1
PCDH1-208ENST00000515351 MAPKBP1O60336 1514 aa21.93■■□□□ 1.1
PCDH1-208ENST00000515351 FMN1Q68DA7 1419 aa21.93■■□□□ 1.1
PCDH1-208ENST00000515351 TDRD9Q8NDG6 1382 aaKnown RBP21.92■■□□□ 1.1
PCDH1-208ENST00000515351 SNAPC4Q5SXM2 1469 aa21.9■■□□□ 1.1
PCDH1-208ENST00000515351 ATP1B4Q9UN42 357 aaPredicted RBP21.9■■□□□ 1.1
PCDH1-208ENST00000515351 GTF3C3Q9Y5Q9 886 aa21.9■■□□□ 1.1
PCDH1-208ENST00000515351 TARBP1Q13395 1621 aaKnown RBP21.88■■□□□ 1.09
PCDH1-208ENST00000515351 FAM50AQ14320 339 aaKnown RBP21.87■■□□□ 1.09
PCDH1-208ENST00000515351 LRRIQ1Q96JM4 1722 aa21.87■■□□□ 1.09
PCDH1-208ENST00000515351 DNAJC5BQ9UF47 199 aa21.86■■□□□ 1.09
PCDH1-208ENST00000515351 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.85■■□□□ 1.09
PCDH1-208ENST00000515351 YTHDC1Q96MU7 727 aaKnown RBP21.85■■□□□ 1.09
PCDH1-208ENST00000515351 PBRM1Q86U86 1689 aa21.81■■□□□ 1.08
PCDH1-208ENST00000515351 THOC2Q8NI27 1593 aaKnown RBP21.8■■□□□ 1.08
PCDH1-208ENST00000515351 GRIN2BQ13224 1484 aa21.78■■□□□ 1.08
PCDH1-208ENST00000515351 FGD6Q6ZV73 1430 aa21.78■■□□□ 1.08
PCDH1-208ENST00000515351 PELP1Q8IZL8 1130 aaKnown RBP21.75■■□□□ 1.07
PCDH1-208ENST00000515351 MTUS2Q5JR59 1369 aa21.75■■□□□ 1.07
PCDH1-208ENST00000515351 SUPT6HQ7KZ85 1726 aaKnown RBP21.73■■□□□ 1.07
PCDH1-208ENST00000515351 EHBP1L1Q8N3D4 1523 aa21.7■■□□□ 1.06
PCDH1-208ENST00000515351 ADAMTS12P58397 1594 aa21.69■■□□□ 1.06
PCDH1-208ENST00000515351 NCOA2Q15596 1464 aa21.69■■□□□ 1.06
PCDH1-208ENST00000515351 MRC2Q9UBG0 1479 aa21.67■■□□□ 1.06
PCDH1-208ENST00000515351 IQGAP2Q13576 1575 aa21.67■■□□□ 1.06
PCDH1-208ENST00000515351 MYOM3Q5VTT5 1437 aa21.66■■□□□ 1.06
PCDH1-208ENST00000515351 CCDC18Q5T9S5 1454 aa21.64■■□□□ 1.06
PCDH1-208ENST00000515351 SIN3AQ96ST3 1273 aa21.64■■□□□ 1.05
PCDH1-208ENST00000515351 TIMELESSQ9UNS1 1208 aa21.63■■□□□ 1.05
PCDH1-208ENST00000515351 HECW1Q76N89 1606 aa21.63■■□□□ 1.05
PCDH1-208ENST00000515351 PTPN23Q9H3S7 1636 aa21.63■■□□□ 1.05
PCDH1-208ENST00000515351 HFM1A2PYH4 1435 aa21.63■■□□□ 1.05
PCDH1-208ENST00000515351 ARHGEF11O15085 1522 aa21.63■■□□□ 1.05
PCDH1-208ENST00000515351 UGGT2Q9NYU1 1516 aa21.63■■□□□ 1.05
PCDH1-208ENST00000515351 PTPRKQ15262 1439 aa21.62■■□□□ 1.05
PCDH1-208ENST00000515351 MAGI3Q5TCQ9 1506 aa21.61■■□□□ 1.05
PCDH1-208ENST00000515351 UACAQ9BZF9 1416 aa21.56■■□□□ 1.04
PCDH1-208ENST00000515351 NAIPQ13075 1403 aa21.54■■□□□ 1.04
PCDH1-208ENST00000515351 EPRSP07814 1512 aaKnown RBP21.54■■□□□ 1.04
PCDH1-208ENST00000515351 IFT140Q96RY7 1462 aa21.53■■□□□ 1.04
PCDH1-208ENST00000515351 WDR62O43379 1518 aa21.53■■□□□ 1.04
PCDH1-208ENST00000515351 TCOF1Q13428 1488 aaKnown RBP21.52■■□□□ 1.04
PCDH1-208ENST00000515351 ZNF608Q9ULD9 1512 aaPredicted RBP21.5■■□□□ 1.03
PCDH1-208ENST00000515351 GCC2Q8IWJ2 1684 aa21.5■■□□□ 1.03
PCDH1-208ENST00000515351 PPP1R15AO75807 674 aaPredicted RBP21.49■■□□□ 1.03
PCDH1-208ENST00000515351 CDK13Q14004 1512 aaKnown RBP21.47■■□□□ 1.03
PCDH1-208ENST00000515351 KIAA0556O60303 1618 aa21.43■■□□□ 1.02
PCDH1-208ENST00000515351 TONSLQ96HA7 1378 aa21.43■■□□□ 1.02
PCDH1-208ENST00000515351 KIAA0586Q9BVV6 1533 aa21.43■■□□□ 1.02
PCDH1-208ENST00000515351 EIF4G3O43432 1585 aaKnown RBP21.43■■□□□ 1.02
PCDH1-208ENST00000515351 MIA2Q96PC5 1412 aa21.42■■□□□ 1.02
PCDH1-208ENST00000515351 AKNAQ7Z591 1439 aa21.41■■□□□ 1.02
PCDH1-208ENST00000515351 DISP1Q96F81 1524 aa21.4■■□□□ 1.02
PCDH1-208ENST00000515351 GRIN2AQ12879 1464 aa21.38■■□□□ 1.01
PCDH1-208ENST00000515351 DDX10Q13206 875 aaKnown RBP21.37■■□□□ 1.01
PCDH1-208ENST00000515351 RAPGEF6Q8TEU7 1601 aa21.35■■□□□ 1.01
PCDH1-208ENST00000515351 KDM6BO15054 1643 aa21.35■■□□□ 1.01
PCDH1-208ENST00000515351 RRP7BPQ9NSQ0 103 aa21.34■■□□□ 1.01
PCDH1-208ENST00000515351 KDM5BQ9UGL1 1544 aa21.34■■□□□ 1.01
PCDH1-208ENST00000515351 NUP153P49790 1475 aaKnown RBP21.33■■□□□ 1
PCDH1-208ENST00000515351 CHIC2Q9UKJ5 165 aa21.32■■□□□ 1
PCDH1-208ENST00000515351 DENND4BO75064 1496 aaPredicted RBP21.31■■□□□ 1
PCDH1-208ENST00000515351 KCNH8Q96L42 1107 aa21.31■■□□□ 1
PCDH1-208ENST00000515351 ARID3CA6NKF2 412 aa21.3■■□□□ 1
PCDH1-208ENST00000515351 HIRIP3Q9BW71 556 aaPredicted RBP21.3■■□□□ 1
PCDH1-208ENST00000515351 MAGI1Q96QZ7 1491 aaPredicted RBP21.29■■□□□ 1
PCDH1-208ENST00000515351 DNMT1P26358 1616 aaKnown RBP21.29■■□□□ 1
PCDH1-208ENST00000515351 ERCC6Q03468 1493 aa21.27■■□□□ 1
PCDH1-208ENST00000515351 CEP170Q5SW79 1584 aa21.26■□□□□ 0.99
PCDH1-208ENST00000515351 DAPK1P53355 1430 aa21.25■□□□□ 0.99
PCDH1-208ENST00000515351 ROCK1Q13464 1354 aa21.23■□□□□ 0.99
PCDH1-208ENST00000515351 SYNJ2O15056 1496 aa21.23■□□□□ 0.99
PCDH1-208ENST00000515351 TRIM52Q96A61 297 aa21.22■□□□□ 0.99
PCDH1-208ENST00000515351 ITSN2Q9NZM3 1697 aa21.2■□□□□ 0.98
PCDH1-208ENST00000515351 CDK11AQ9UQ88 783 aaPredicted RBP21.2■□□□□ 0.98
PCDH1-208ENST00000515351 ABCC5O15440 1437 aa21.2■□□□□ 0.98
PCDH1-208ENST00000515351 SUPT16HQ9Y5B9 1047 aaKnown RBP21.19■□□□□ 0.98
PCDH1-208ENST00000515351 MPHOSPH9Q99550 1183 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms