RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 SYNJ2O15056 1496 aa25.04■■□□□ 1.6
NUP54-214ENST00000514307 APLP2Q06481 763 aa24.99■■□□□ 1.59
NUP54-214ENST00000514307 GRIN2AQ12879 1464 aa24.96■■□□□ 1.59
NUP54-214ENST00000514307 VPS8Q8N3P4 1428 aa24.94■■□□□ 1.58
NUP54-214ENST00000514307 KIAA0586Q9BVV6 1533 aa24.92■■□□□ 1.58
NUP54-214ENST00000514307 ARHGAP35Q9NRY4 1499 aa24.92■■□□□ 1.58
NUP54-214ENST00000514307 CHD1O14646 1710 aa24.91■■□□□ 1.58
NUP54-214ENST00000514307 P3H3Q8IVL6 736 aa24.89■■□□□ 1.58
NUP54-214ENST00000514307 EFCAB5A4FU69 1503 aa24.86■■□□□ 1.57
NUP54-214ENST00000514307 CTTNBP2Q8WZ74 1663 aa24.85■■□□□ 1.57
NUP54-214ENST00000514307 ARAP1Q96P48 1450 aa24.84■■□□□ 1.57
NUP54-214ENST00000514307 JPH4Q96JJ6 628 aa24.82■■□□□ 1.56
NUP54-214ENST00000514307 NUP160Q12769 1436 aa24.81■■□□□ 1.56
NUP54-214ENST00000514307 IQGAP2Q13576 1575 aa24.8■■□□□ 1.56
NUP54-214ENST00000514307 TRIM26Q12899 539 aaPredicted RBP24.8■■□□□ 1.56
NUP54-214ENST00000514307 FMN1Q68DA7 1419 aa24.77■■□□□ 1.56
NUP54-214ENST00000514307 UGGT2Q9NYU1 1516 aa24.74■■□□□ 1.55
NUP54-214ENST00000514307 PPARGC1BQ86YN6 1023 aaKnown RBP24.73■■□□□ 1.55
NUP54-214ENST00000514307 ATP1B4Q9UN42 357 aaPredicted RBP24.72■■□□□ 1.55
NUP54-214ENST00000514307 FHOD3Q2V2M9 1422 aa24.71■■□□□ 1.55
NUP54-214ENST00000514307 CARMIL2Q6F5E8 1435 aa24.71■■□□□ 1.55
NUP54-214ENST00000514307 OSCARQ8IYS5 282 aa24.71■■□□□ 1.55
NUP54-214ENST00000514307 CEP170Q5SW79 1584 aa24.69■■□□□ 1.54
NUP54-214ENST00000514307 SAMD9Q5K651 1589 aa24.67■■□□□ 1.54
NUP54-214ENST00000514307 CASKIN1Q8WXD9 1431 aa24.63■■□□□ 1.53
NUP54-214ENST00000514307 PCGF6Q9BYE7 350 aa24.63■■□□□ 1.53
NUP54-214ENST00000514307 RIMBP3CA6NJZ7 1639 aa24.61■■□□□ 1.53
NUP54-214ENST00000514307 RIMBP3BA6NNM3 1639 aa24.61■■□□□ 1.53
NUP54-214ENST00000514307 RIMBP3Q9UFD9 1639 aa24.61■■□□□ 1.53
NUP54-214ENST00000514307 MAP3K1Q13233 1512 aa24.58■■□□□ 1.53
NUP54-214ENST00000514307 DISP1Q96F81 1524 aa24.58■■□□□ 1.53
NUP54-214ENST00000514307 FYCO1Q9BQS8 1478 aa24.57■■□□□ 1.52
NUP54-214ENST00000514307 PRG4Q92954 1404 aaPredicted RBP24.54■■□□□ 1.52
NUP54-214ENST00000514307 ARHGEF11O15085 1522 aa24.53■■□□□ 1.52
NUP54-214ENST00000514307 TTBK1Q5TCY1 1321 aaPredicted RBP24.53■■□□□ 1.52
NUP54-214ENST00000514307 KANK4Q5T7N3 995 aaPredicted RBP24.51■■□□□ 1.51
NUP54-214ENST00000514307 KIAA0556O60303 1618 aa24.5■■□□□ 1.51
NUP54-214ENST00000514307 CLASP1Q7Z460 1538 aa24.47■■□□□ 1.51
NUP54-214ENST00000514307 PTPRGP23470 1445 aa24.46■■□□□ 1.51
NUP54-214ENST00000514307 CDK11AQ9UQ88 783 aaPredicted RBP24.45■■□□□ 1.5
NUP54-214ENST00000514307 PCF11O94913 1555 aaKnown RBP24.42■■□□□ 1.5
NUP54-214ENST00000514307 CCDC18Q5T9S5 1454 aa24.4■■□□□ 1.5
NUP54-214ENST00000514307 TIAM1Q13009 1591 aa24.4■■□□□ 1.5
NUP54-214ENST00000514307 LRRC9Q6ZRR7 1453 aa24.38■■□□□ 1.49
NUP54-214ENST00000514307 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.38■■□□□ 1.49
NUP54-214ENST00000514307 HNRNPUL2Q1KMD3 747 aaKnown RBP24.38■■□□□ 1.49
NUP54-214ENST00000514307 MTUS2Q5JR59 1369 aa24.37■■□□□ 1.49
NUP54-214ENST00000514307 SHROOM2Q13796 1616 aa24.36■■□□□ 1.49
NUP54-214ENST00000514307 HECW1Q76N89 1606 aa24.34■■□□□ 1.49
NUP54-214ENST00000514307 EPRSP07814 1512 aaKnown RBP24.31■■□□□ 1.48
NUP54-214ENST00000514307 RAPGEF6Q8TEU7 1601 aa24.28■■□□□ 1.48
NUP54-214ENST00000514307 PLB1Q6P1J6 1458 aa24.27■■□□□ 1.48
NUP54-214ENST00000514307 PLEKHD1A6NEE1 506 aa24.27■■□□□ 1.48
NUP54-214ENST00000514307 ARID3CA6NKF2 412 aa24.26■■□□□ 1.47
NUP54-214ENST00000514307 UACAQ9BZF9 1416 aa24.26■■□□□ 1.47
NUP54-214ENST00000514307 NUP153P49790 1475 aaKnown RBP24.25■■□□□ 1.47
NUP54-214ENST00000514307 CFAP43Q8NDM7 1665 aa24.24■■□□□ 1.47
NUP54-214ENST00000514307 ERCC6L2Q5T890 1561 aa24.23■■□□□ 1.47
NUP54-214ENST00000514307 ABCA8O94911 1581 aa24.21■■□□□ 1.47
NUP54-214ENST00000514307 CYB5RLQ6IPT4 315 aa24.21■■□□□ 1.47
NUP54-214ENST00000514307 CCNB3Q8WWL7 1395 aa24.16■■□□□ 1.46
NUP54-214ENST00000514307 EHBP1L1Q8N3D4 1523 aa24.16■■□□□ 1.46
NUP54-214ENST00000514307 RRBP1Q9P2E9 1410 aaKnown RBP24.16■■□□□ 1.46
NUP54-214ENST00000514307 ATP10BO94823 1461 aa24.15■■□□□ 1.46
NUP54-214ENST00000514307 CDK13Q14004 1512 aaKnown RBP24.15■■□□□ 1.46
NUP54-214ENST00000514307 PHLDB1Q86UU1 1377 aa24.13■■□□□ 1.45
NUP54-214ENST00000514307 UHRF1BP1LA0JNW5 1464 aa24.12■■□□□ 1.45
NUP54-214ENST00000514307 NCOA2Q15596 1464 aa24.11■■□□□ 1.45
NUP54-214ENST00000514307 TROQ12816 1431 aaPredicted RBP24.1■■□□□ 1.45
NUP54-214ENST00000514307 NPM1P06748 294 aaKnown RBP eCLIP24.09■■□□□ 1.45
NUP54-214ENST00000514307 FAM50AQ14320 339 aaKnown RBP24.09■■□□□ 1.45
NUP54-214ENST00000514307 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.08■■□□□ 1.45
NUP54-214ENST00000514307 ABCC2Q92887 1545 aa24.07■■□□□ 1.44
NUP54-214ENST00000514307 LRRIQ1Q96JM4 1722 aa24.06■■□□□ 1.44
NUP54-214ENST00000514307 SUPT6HQ7KZ85 1726 aaKnown RBP24.05■■□□□ 1.44
NUP54-214ENST00000514307 MYOM3Q5VTT5 1437 aa24.04■■□□□ 1.44
NUP54-214ENST00000514307 MAGI3Q5TCQ9 1506 aa24.04■■□□□ 1.44
NUP54-214ENST00000514307 FGD6Q6ZV73 1430 aa24.01■■□□□ 1.43
NUP54-214ENST00000514307 MIA2Q96PC5 1412 aa24■■□□□ 1.43
NUP54-214ENST00000514307 ITGAEP38570 1179 aa23.98■■□□□ 1.43
NUP54-214ENST00000514307 KDM5BQ9UGL1 1544 aa23.97■■□□□ 1.43
NUP54-214ENST00000514307 CFDP1Q9UEE9 299 aaPredicted RBP23.96■■□□□ 1.43
NUP54-214ENST00000514307 KCNH8Q96L42 1107 aa23.93■■□□□ 1.42
NUP54-214ENST00000514307 ZEB1P37275 1124 aaPredicted RBP23.86■■□□□ 1.41
NUP54-214ENST00000514307 GPATCH8Q9UKJ3 1502 aaKnown RBP23.85■■□□□ 1.41
NUP54-214ENST00000514307 KIF14Q15058 1648 aa23.84■■□□□ 1.41
NUP54-214ENST00000514307 TCOF1Q13428 1488 aaKnown RBP23.84■■□□□ 1.41
NUP54-214ENST00000514307 HRCP23327 699 aa23.84■■□□□ 1.41
NUP54-214ENST00000514307 CCER1Q8TC90 406 aaPredicted RBP23.84■■□□□ 1.41
NUP54-214ENST00000514307 ADCY10Q96PN6 1610 aa23.84■■□□□ 1.41
NUP54-214ENST00000514307 ZNF777Q9ULD5 760 aaPredicted RBP23.83■■□□□ 1.41
NUP54-214ENST00000514307 TRHP20396 242 aaPredicted RBP23.82■■□□□ 1.4
NUP54-214ENST00000514307 ABCC10Q5T3U5 1492 aa23.81■■□□□ 1.4
NUP54-214ENST00000514307 RSPH4AQ5TD94 716 aa23.81■■□□□ 1.4
NUP54-214ENST00000514307 ZCCHC11Q5TAX3 1644 aaKnown RBP23.8■■□□□ 1.4
NUP54-214ENST00000514307 PTPN23Q9H3S7 1636 aa23.79■■□□□ 1.4
NUP54-214ENST00000514307 EFCAB2Q5VUJ9 269 aa23.78■■□□□ 1.4
NUP54-214ENST00000514307 ZNF644Q9H582 1327 aaPredicted RBP23.76■■□□□ 1.39
NUP54-214ENST00000514307 ACIN1Q9UKV3 1341 aaKnown RBP23.76■■□□□ 1.39
NUP54-214ENST00000514307 SETD5Q9C0A6 1442 aa23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 294.3 ms