RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 TDRD9Q8NDG6 1382 aaKnown RBP11.7□□□□□ -0.54
CLIP1-205ENST00000514271 GRIN2AQ12879 1464 aa11.68□□□□□ -0.54
CLIP1-205ENST00000514271 CLASP1Q7Z460 1538 aa11.67□□□□□ -0.54
CLIP1-205ENST00000514271 NUP160Q12769 1436 aa11.66□□□□□ -0.54
CLIP1-205ENST00000514271 TTBK1Q5TCY1 1321 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-205ENST00000514271 IGF1RP08069 1367 aa11.64□□□□□ -0.55
CLIP1-205ENST00000514271 PRKCSHP14314 528 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-205ENST00000514271 OSCARQ8IYS5 282 aa11.63□□□□□ -0.55
CLIP1-205ENST00000514271 RAPGEF2Q9Y4G8 1499 aa11.62□□□□□ -0.55
CLIP1-205ENST00000514271 SHROOM2Q13796 1616 aa11.62□□□□□ -0.55
CLIP1-205ENST00000514271 CTTNBP2Q8WZ74 1663 aa11.61□□□□□ -0.55
CLIP1-205ENST00000514271 CARMIL1Q5VZK9 1371 aa11.61□□□□□ -0.55
CLIP1-205ENST00000514271 PRXQ9BXM0 1461 aa11.6□□□□□ -0.55
CLIP1-205ENST00000514271 CHMP7Q8WUX9 453 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-205ENST00000514271 RUSC2Q8N2Y8 1516 aa11.6□□□□□ -0.55
CLIP1-205ENST00000514271 EHMT2Q96KQ7 1210 aa11.59□□□□□ -0.55
CLIP1-205ENST00000514271 KIAA0586Q9BVV6 1533 aa11.59□□□□□ -0.55
CLIP1-205ENST00000514271 CEP170Q5SW79 1584 aa11.57□□□□□ -0.56
CLIP1-205ENST00000514271 DNAJC5Q9H3Z4 198 aa11.54□□□□□ -0.56
CLIP1-205ENST00000514271 IQGAP2Q13576 1575 aa11.54□□□□□ -0.56
CLIP1-205ENST00000514271 TNIKQ9UKE5 1360 aa11.54□□□□□ -0.56
CLIP1-205ENST00000514271 APLP2Q06481 763 aa11.54□□□□□ -0.56
CLIP1-205ENST00000514271 ACIN1Q9UKV3 1341 aaKnown RBP11.53□□□□□ -0.56
CLIP1-205ENST00000514271 CSRNP3Q8WYN3 585 aa11.53□□□□□ -0.56
CLIP1-205ENST00000514271 UGGT2Q9NYU1 1516 aa11.52□□□□□ -0.56
CLIP1-205ENST00000514271 GOLGA3Q08378 1498 aa11.52□□□□□ -0.57
CLIP1-205ENST00000514271 PLPPR3Q6T4P5 718 aa11.49□□□□□ -0.57
CLIP1-205ENST00000514271 EFCAB5A4FU69 1503 aa11.48□□□□□ -0.57
CLIP1-205ENST00000514271 RIMBP3CA6NJZ7 1639 aa11.48□□□□□ -0.57
CLIP1-205ENST00000514271 RIMBP3BA6NNM3 1639 aa11.48□□□□□ -0.57
CLIP1-205ENST00000514271 RIMBP3Q9UFD9 1639 aa11.48□□□□□ -0.57
CLIP1-205ENST00000514271 CEP162Q5TB80 1403 aa11.48□□□□□ -0.57
CLIP1-205ENST00000514271 CARMIL2Q6F5E8 1435 aa11.48□□□□□ -0.57
CLIP1-205ENST00000514271 ARHGEF11O15085 1522 aa11.48□□□□□ -0.57
CLIP1-205ENST00000514271 NEUROD1Q13562 356 aa11.47□□□□□ -0.57
CLIP1-205ENST00000514271 FBLN2P98095 1184 aa11.46□□□□□ -0.58
CLIP1-205ENST00000514271 SAMD9Q5K651 1589 aa11.43□□□□□ -0.58
CLIP1-205ENST00000514271 KIAA0556O60303 1618 aa11.42□□□□□ -0.58
CLIP1-205ENST00000514271 FAM9AQ8IZU1 332 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-205ENST00000514271 ERICH6Q7L0X2 663 aa11.4□□□□□ -0.58
CLIP1-205ENST00000514271 PRG4Q92954 1404 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-205ENST00000514271 JPH4Q96JJ6 628 aa11.39□□□□□ -0.59
CLIP1-205ENST00000514271 RTN4Q9NQC3 1192 aaKnown RBP11.39□□□□□ -0.59
CLIP1-205ENST00000514271 UHRF1BP1LA0JNW5 1464 aa11.39□□□□□ -0.59
CLIP1-205ENST00000514271 NCBP3Q53F19 620 aaKnown RBP11.37□□□□□ -0.59
CLIP1-205ENST00000514271 ARAP1Q96P48 1450 aa11.36□□□□□ -0.59
CLIP1-205ENST00000514271 DISP1Q96F81 1524 aa11.36□□□□□ -0.59
CLIP1-205ENST00000514271 ABCC2Q92887 1545 aa11.31□□□□□ -0.6
CLIP1-205ENST00000514271 PTPRGP23470 1445 aa11.3□□□□□ -0.6
CLIP1-205ENST00000514271 ABCA8O94911 1581 aa11.3□□□□□ -0.6
CLIP1-205ENST00000514271 CFAP43Q8NDM7 1665 aa11.3□□□□□ -0.6
CLIP1-205ENST00000514271 MAP3K1Q13233 1512 aa11.29□□□□□ -0.6
CLIP1-205ENST00000514271 FMN1Q68DA7 1419 aa11.29□□□□□ -0.6
CLIP1-205ENST00000514271 MAPKBP1O60336 1514 aa11.29□□□□□ -0.6
CLIP1-205ENST00000514271 RRBP1Q9P2E9 1410 aaKnown RBP11.29□□□□□ -0.6
CLIP1-205ENST00000514271 ERCC6L2Q5T890 1561 aa11.28□□□□□ -0.6
CLIP1-205ENST00000514271 VPS8Q8N3P4 1428 aa11.28□□□□□ -0.6
CLIP1-205ENST00000514271 UACAQ9BZF9 1416 aa11.27□□□□□ -0.6
CLIP1-205ENST00000514271 CLIP1P30622 1438 aa11.27□□□□□ -0.61
CLIP1-205ENST00000514271 RAPGEF6Q8TEU7 1601 aa11.27□□□□□ -0.61
CLIP1-205ENST00000514271 HECW1Q76N89 1606 aa11.26□□□□□ -0.61
CLIP1-205ENST00000514271 ADCY10Q96PN6 1610 aa11.25□□□□□ -0.61
CLIP1-205ENST00000514271 KDM5BQ9UGL1 1544 aa11.25□□□□□ -0.61
CLIP1-205ENST00000514271 UBTFP17480 764 aaKnown RBP11.23□□□□□ -0.61
CLIP1-205ENST00000514271 ARHGAP35Q9NRY4 1499 aa11.22□□□□□ -0.61
CLIP1-205ENST00000514271 PLB1Q6P1J6 1458 aa11.22□□□□□ -0.61
CLIP1-205ENST00000514271 CCDC18Q5T9S5 1454 aa11.22□□□□□ -0.61
CLIP1-205ENST00000514271 GLI2P10070 1586 aa11.22□□□□□ -0.61
CLIP1-205ENST00000514271 CLSPNQ9HAW4 1339 aa11.21□□□□□ -0.61
CLIP1-205ENST00000514271 PIAS4Q8N2W9 510 aaPredicted RBP11.21□□□□□ -0.62
CLIP1-205ENST00000514271 FYCO1Q9BQS8 1478 aa11.21□□□□□ -0.62
CLIP1-205ENST00000514271 NPM1P06748 294 aaKnown RBP eCLIP11.2□□□□□ -0.62
CLIP1-205ENST00000514271 ZCCHC11Q5TAX3 1644 aaKnown RBP11.2□□□□□ -0.62
CLIP1-205ENST00000514271 LRRIQ1Q96JM4 1722 aa11.19□□□□□ -0.62
CLIP1-205ENST00000514271 DIEXFQ68CQ4 756 aaKnown RBP11.19□□□□□ -0.62
CLIP1-205ENST00000514271 GTF3C3Q9Y5Q9 886 aa11.19□□□□□ -0.62
CLIP1-205ENST00000514271 CASKIN1Q8WXD9 1431 aa11.18□□□□□ -0.62
CLIP1-205ENST00000514271 POLR1AO95602 1720 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-205ENST00000514271 DHX57Q6P158 1386 aaKnown RBP11.17□□□□□ -0.62
CLIP1-205ENST00000514271 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-205ENST00000514271 CYB5RLQ6IPT4 315 aa11.15□□□□□ -0.62
CLIP1-205ENST00000514271 ZNF316A6NFI3 1004 aaPredicted RBP11.15□□□□□ -0.63
CLIP1-205ENST00000514271 FHOD3Q2V2M9 1422 aa11.15□□□□□ -0.63
CLIP1-205ENST00000514271 ABCC10Q5T3U5 1492 aa11.13□□□□□ -0.63
CLIP1-205ENST00000514271 NUP153P49790 1475 aaKnown RBP11.13□□□□□ -0.63
CLIP1-205ENST00000514271 WDR7Q9Y4E6 1490 aa11.13□□□□□ -0.63
CLIP1-205ENST00000514271 CFAP74Q9C0B2 1584 aa11.12□□□□□ -0.63
CLIP1-205ENST00000514271 DIP2BQ9P265 1576 aa11.12□□□□□ -0.63
CLIP1-205ENST00000514271 PCF11O94913 1555 aaKnown RBP11.11□□□□□ -0.63
CLIP1-205ENST00000514271 ARAP3Q8WWN8 1544 aa11.11□□□□□ -0.63
CLIP1-205ENST00000514271 CDK11AQ9UQ88 783 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-205ENST00000514271 KIF13AQ9H1H9 1805 aa11.1□□□□□ -0.63
CLIP1-205ENST00000514271 EPRSP07814 1512 aaKnown RBP11.1□□□□□ -0.63
CLIP1-205ENST00000514271 ATP10BO94823 1461 aa11.1□□□□□ -0.63
CLIP1-205ENST00000514271 ABCA9Q8IUA7 1624 aa11.09□□□□□ -0.63
CLIP1-205ENST00000514271 MAP3K4Q9Y6R4 1608 aa11.09□□□□□ -0.63
CLIP1-205ENST00000514271 PHLDB1Q86UU1 1377 aa11.09□□□□□ -0.63
CLIP1-205ENST00000514271 TIAM1Q13009 1591 aa11.09□□□□□ -0.63
CLIP1-205ENST00000514271 ASXL2Q76L83 1435 aa11.09□□□□□ -0.63
CLIP1-205ENST00000514271 TEX14Q8IWB6 1497 aa11.08□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms