RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 FHAD1B1AJZ9 1412 aa21.14■□□□□ 0.98
LIMCH1-220ENST00000514190 RAPGEF2Q9Y4G8 1499 aa21.13■□□□□ 0.97
LIMCH1-220ENST00000514190 CUL7Q14999 1698 aa21.13■□□□□ 0.97
LIMCH1-220ENST00000514190 GOLGA3Q08378 1498 aa21.13■□□□□ 0.97
LIMCH1-220ENST00000514190 ARAP1Q96P48 1450 aa21.09■□□□□ 0.97
LIMCH1-220ENST00000514190 UBTFP17480 764 aaKnown RBP21.08■□□□□ 0.97
LIMCH1-220ENST00000514190 CYB5RLQ6IPT4 315 aa21.06■□□□□ 0.96
LIMCH1-220ENST00000514190 NUP160Q12769 1436 aa21.05■□□□□ 0.96
LIMCH1-220ENST00000514190 CEP170Q5SW79 1584 aa21.05■□□□□ 0.96
LIMCH1-220ENST00000514190 TNIKQ9UKE5 1360 aa21.03■□□□□ 0.96
LIMCH1-220ENST00000514190 SHROOM2Q13796 1616 aa20.93■□□□□ 0.94
LIMCH1-220ENST00000514190 ERCC6L2Q5T890 1561 aa20.89■□□□□ 0.94
LIMCH1-220ENST00000514190 KIAA0586Q9BVV6 1533 aa20.84■□□□□ 0.93
LIMCH1-220ENST00000514190 CEP162Q5TB80 1403 aa20.82■□□□□ 0.92
LIMCH1-220ENST00000514190 PRG4Q92954 1404 aaPredicted RBP20.81■□□□□ 0.92
LIMCH1-220ENST00000514190 RANGAP1P46060 587 aaPredicted RBP20.8■□□□□ 0.92
LIMCH1-220ENST00000514190 JPH4Q96JJ6 628 aa20.8■□□□□ 0.92
LIMCH1-220ENST00000514190 CLIP1P30622 1438 aa20.78■□□□□ 0.92
LIMCH1-220ENST00000514190 CTTNBP2Q8WZ74 1663 aa20.77■□□□□ 0.92
LIMCH1-220ENST00000514190 IQGAP2Q13576 1575 aa20.76■□□□□ 0.91
LIMCH1-220ENST00000514190 TRHP20396 242 aaPredicted RBP20.71■□□□□ 0.91
LIMCH1-220ENST00000514190 UGGT2Q9NYU1 1516 aa20.69■□□□□ 0.9
LIMCH1-220ENST00000514190 ARHGAP35Q9NRY4 1499 aa20.69■□□□□ 0.9
LIMCH1-220ENST00000514190 EFCAB5A4FU69 1503 aa20.65■□□□□ 0.9
LIMCH1-220ENST00000514190 P3H3Q8IVL6 736 aa20.65■□□□□ 0.9
LIMCH1-220ENST00000514190 SAMD9Q5K651 1589 aa20.61■□□□□ 0.89
LIMCH1-220ENST00000514190 DISP1Q96F81 1524 aa20.61■□□□□ 0.89
LIMCH1-220ENST00000514190 CARMIL2Q6F5E8 1435 aa20.6■□□□□ 0.89
LIMCH1-220ENST00000514190 FHOD3Q2V2M9 1422 aa20.58■□□□□ 0.88
LIMCH1-220ENST00000514190 ADCY10Q96PN6 1610 aa20.54■□□□□ 0.88
LIMCH1-220ENST00000514190 VPS8Q8N3P4 1428 aa20.53■□□□□ 0.88
LIMCH1-220ENST00000514190 KIAA0556O60303 1618 aa20.53■□□□□ 0.88
LIMCH1-220ENST00000514190 PTPRGP23470 1445 aa20.53■□□□□ 0.88
LIMCH1-220ENST00000514190 FMN1Q68DA7 1419 aa20.5■□□□□ 0.87
LIMCH1-220ENST00000514190 NPM1P06748 294 aaKnown RBP eCLIP20.48■□□□□ 0.87
LIMCH1-220ENST00000514190 MAPKBP1O60336 1514 aa20.47■□□□□ 0.87
LIMCH1-220ENST00000514190 TTBK1Q5TCY1 1321 aaPredicted RBP20.45■□□□□ 0.86
LIMCH1-220ENST00000514190 KIF13AQ9H1H9 1805 aa20.43■□□□□ 0.86
LIMCH1-220ENST00000514190 CASKIN1Q8WXD9 1431 aa20.42■□□□□ 0.86
LIMCH1-220ENST00000514190 ABCC2Q92887 1545 aa20.39■□□□□ 0.85
LIMCH1-220ENST00000514190 UHRF1BP1LA0JNW5 1464 aa20.39■□□□□ 0.85
LIMCH1-220ENST00000514190 ABCC10Q5T3U5 1492 aa20.38■□□□□ 0.85
LIMCH1-220ENST00000514190 UACAQ9BZF9 1416 aa20.38■□□□□ 0.85
LIMCH1-220ENST00000514190 ATP1B4Q9UN42 357 aaPredicted RBP20.37■□□□□ 0.85
LIMCH1-220ENST00000514190 APLP2Q06481 763 aa20.36■□□□□ 0.85
LIMCH1-220ENST00000514190 DIP2BQ9P265 1576 aa20.36■□□□□ 0.85
LIMCH1-220ENST00000514190 FYCO1Q9BQS8 1478 aa20.36■□□□□ 0.85
LIMCH1-220ENST00000514190 PLB1Q6P1J6 1458 aa20.34■□□□□ 0.85
LIMCH1-220ENST00000514190 PCF11O94913 1555 aaKnown RBP20.34■□□□□ 0.85
LIMCH1-220ENST00000514190 FAM69CQ0P6D2 419 aa20.32■□□□□ 0.84
LIMCH1-220ENST00000514190 ABCA8O94911 1581 aa20.31■□□□□ 0.84
LIMCH1-220ENST00000514190 KDM5BQ9UGL1 1544 aa20.3■□□□□ 0.84
LIMCH1-220ENST00000514190 RAPGEF6Q8TEU7 1601 aa20.28■□□□□ 0.84
LIMCH1-220ENST00000514190 ASXL2Q76L83 1435 aa20.27■□□□□ 0.84
LIMCH1-220ENST00000514190 MAP3K1Q13233 1512 aa20.27■□□□□ 0.84
LIMCH1-220ENST00000514190 NUP153P49790 1475 aaKnown RBP20.27■□□□□ 0.84
LIMCH1-220ENST00000514190 ZCCHC11Q5TAX3 1644 aaKnown RBP20.26■□□□□ 0.83
LIMCH1-220ENST00000514190 HECW1Q76N89 1606 aa20.25■□□□□ 0.83
LIMCH1-220ENST00000514190 EPRSP07814 1512 aaKnown RBP20.24■□□□□ 0.83
LIMCH1-220ENST00000514190 ARID3CA6NKF2 412 aa20.23■□□□□ 0.83
LIMCH1-220ENST00000514190 CCDC18Q5T9S5 1454 aa20.23■□□□□ 0.83
LIMCH1-220ENST00000514190 KANK4Q5T7N3 995 aaPredicted RBP20.22■□□□□ 0.83
LIMCH1-220ENST00000514190 PPARGC1BQ86YN6 1023 aaKnown RBP20.22■□□□□ 0.83
LIMCH1-220ENST00000514190 GLI2P10070 1586 aa20.21■□□□□ 0.83
LIMCH1-220ENST00000514190 TIAM1Q13009 1591 aa20.21■□□□□ 0.83
LIMCH1-220ENST00000514190 ATP10BO94823 1461 aa20.2■□□□□ 0.82
LIMCH1-220ENST00000514190 TSPOAP1O95153 1857 aa20.18■□□□□ 0.82
LIMCH1-220ENST00000514190 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.18■□□□□ 0.82
LIMCH1-220ENST00000514190 HNRNPUL2Q1KMD3 747 aaKnown RBP20.18■□□□□ 0.82
LIMCH1-220ENST00000514190 CDK11AQ9UQ88 783 aaPredicted RBP20.18■□□□□ 0.82
LIMCH1-220ENST00000514190 CDK13Q14004 1512 aaKnown RBP20.17■□□□□ 0.82
LIMCH1-220ENST00000514190 LRRIQ1Q96JM4 1722 aa20.16■□□□□ 0.82
LIMCH1-220ENST00000514190 LRRC9Q6ZRR7 1453 aa20.15■□□□□ 0.82
LIMCH1-220ENST00000514190 WDR7Q9Y4E6 1490 aa20.14■□□□□ 0.81
LIMCH1-220ENST00000514190 CFAP43Q8NDM7 1665 aa20.13■□□□□ 0.81
LIMCH1-220ENST00000514190 MTUS2Q5JR59 1369 aa20.12■□□□□ 0.81
LIMCH1-220ENST00000514190 PLEKHD1A6NEE1 506 aa20.12■□□□□ 0.81
LIMCH1-220ENST00000514190 PPRC1Q5VV67 1664 aaKnown RBP20.1■□□□□ 0.81
LIMCH1-220ENST00000514190 MAP3K4Q9Y6R4 1608 aa20.1■□□□□ 0.81
LIMCH1-220ENST00000514190 KDM6BO15054 1643 aa20.09■□□□□ 0.81
LIMCH1-220ENST00000514190 MAGI3Q5TCQ9 1506 aa20.07■□□□□ 0.8
LIMCH1-220ENST00000514190 TROQ12816 1431 aaPredicted RBP20.07■□□□□ 0.8
LIMCH1-220ENST00000514190 EHBP1L1Q8N3D4 1523 aa20.04■□□□□ 0.8
LIMCH1-220ENST00000514190 TEX14Q8IWB6 1497 aa20.02■□□□□ 0.8
LIMCH1-220ENST00000514190 KCNH8Q96L42 1107 aa20.01■□□□□ 0.79
LIMCH1-220ENST00000514190 NCOA2Q15596 1464 aa19.98■□□□□ 0.79
LIMCH1-220ENST00000514190 CD109Q6YHK3 1445 aa19.97■□□□□ 0.79
LIMCH1-220ENST00000514190 TRIM26Q12899 539 aaPredicted RBP19.95■□□□□ 0.78
LIMCH1-220ENST00000514190 PHLDB1Q86UU1 1377 aa19.95■□□□□ 0.78
LIMCH1-220ENST00000514190 SUPT6HQ7KZ85 1726 aaKnown RBP19.94■□□□□ 0.78
LIMCH1-220ENST00000514190 ABCA9Q8IUA7 1624 aa19.92■□□□□ 0.78
LIMCH1-220ENST00000514190 COL17A1Q9UMD9 1497 aaPredicted RBP19.92■□□□□ 0.78
LIMCH1-220ENST00000514190 CCNB3Q8WWL7 1395 aa19.9■□□□□ 0.78
LIMCH1-220ENST00000514190 KIF14Q15058 1648 aa19.89■□□□□ 0.77
LIMCH1-220ENST00000514190 MYOM3Q5VTT5 1437 aa19.89■□□□□ 0.77
LIMCH1-220ENST00000514190 RRBP1Q9P2E9 1410 aaKnown RBP19.86■□□□□ 0.77
LIMCH1-220ENST00000514190 GPATCH8Q9UKJ3 1502 aaKnown RBP19.86■□□□□ 0.77
LIMCH1-220ENST00000514190 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.84■□□□□ 0.77
LIMCH1-220ENST00000514190 FGD6Q6ZV73 1430 aa19.84■□□□□ 0.77
LIMCH1-220ENST00000514190 MIA2Q96PC5 1412 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms