RNA–Protein interactions for RNA: ENST00000513957.1

NEDD4-210, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 591 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-210ENST00000513957 CEP170Q5SW79 1584 aa13.9□□□□□ -0.18
NEDD4-210ENST00000513957 IGF1RP08069 1367 aa13.89□□□□□ -0.19
NEDD4-210ENST00000513957 TRIM41Q8WV44 630 aa13.89□□□□□ -0.19
NEDD4-210ENST00000513957 SHROOM2Q13796 1616 aa13.86□□□□□ -0.19
NEDD4-210ENST00000513957 RUSC2Q8N2Y8 1516 aa13.86□□□□□ -0.19
NEDD4-210ENST00000513957 KCNA4P22459 653 aa13.85□□□□□ -0.19
NEDD4-210ENST00000513957 CARMIL1Q5VZK9 1371 aa13.83□□□□□ -0.2
NEDD4-210ENST00000513957 EEA1Q15075 1411 aa13.82□□□□□ -0.2
NEDD4-210ENST00000513957 RAPGEF2Q9Y4G8 1499 aa13.8□□□□□ -0.2
NEDD4-210ENST00000513957 KIAA0586Q9BVV6 1533 aa13.8□□□□□ -0.2
NEDD4-210ENST00000513957 CTTNBP2Q8WZ74 1663 aa13.77□□□□□ -0.21
NEDD4-210ENST00000513957 ARAP1Q96P48 1450 aa13.76□□□□□ -0.21
NEDD4-210ENST00000513957 PRXQ9BXM0 1461 aa13.75□□□□□ -0.21
NEDD4-210ENST00000513957 IQGAP2Q13576 1575 aa13.75□□□□□ -0.21
NEDD4-210ENST00000513957 JPH4Q96JJ6 628 aa13.69□□□□□ -0.22
NEDD4-210ENST00000513957 PRG4Q92954 1404 aaPredicted RBP13.69□□□□□ -0.22
NEDD4-210ENST00000513957 KIF21BO75037 1637 aa13.68□□□□□ -0.22
NEDD4-210ENST00000513957 ERCC6L2Q5T890 1561 aa13.68□□□□□ -0.22
NEDD4-210ENST00000513957 PIAS4Q8N2W9 510 aaPredicted RBP13.67□□□□□ -0.22
NEDD4-210ENST00000513957 UGGT2Q9NYU1 1516 aa13.67□□□□□ -0.22
NEDD4-210ENST00000513957 CSRNP3Q8WYN3 585 aa13.66□□□□□ -0.22
NEDD4-210ENST00000513957 CYB5RLQ6IPT4 315 aa13.65□□□□□ -0.22
NEDD4-210ENST00000513957 CARMIL2Q6F5E8 1435 aa13.64□□□□□ -0.23
NEDD4-210ENST00000513957 KIAA0556O60303 1618 aa13.61□□□□□ -0.23
NEDD4-210ENST00000513957 GOLGA3Q08378 1498 aa13.61□□□□□ -0.23
NEDD4-210ENST00000513957 DISP1Q96F81 1524 aa13.59□□□□□ -0.23
NEDD4-210ENST00000513957 SLC24A1O60721 1099 aa13.57□□□□□ -0.24
NEDD4-210ENST00000513957 TNIKQ9UKE5 1360 aa13.57□□□□□ -0.24
NEDD4-210ENST00000513957 SAMD9Q5K651 1589 aa13.54□□□□□ -0.24
NEDD4-210ENST00000513957 ADCY10Q96PN6 1610 aa13.54□□□□□ -0.24
NEDD4-210ENST00000513957 PTPRGP23470 1445 aa13.53□□□□□ -0.24
NEDD4-210ENST00000513957 ADRA2BP18089 450 aa13.52□□□□□ -0.25
NEDD4-210ENST00000513957 EFCAB5A4FU69 1503 aa13.51□□□□□ -0.25
NEDD4-210ENST00000513957 MAPKBP1O60336 1514 aa13.51□□□□□ -0.25
NEDD4-210ENST00000513957 UHRF1BP1LA0JNW5 1464 aa13.51□□□□□ -0.25
NEDD4-210ENST00000513957 ABCC2Q92887 1545 aa13.49□□□□□ -0.25
NEDD4-210ENST00000513957 FAM9AQ8IZU1 332 aaPredicted RBP13.49□□□□□ -0.25
NEDD4-210ENST00000513957 UACAQ9BZF9 1416 aa13.47□□□□□ -0.25
NEDD4-210ENST00000513957 SLC4A1APQ9BWU0 796 aaKnown RBP13.45□□□□□ -0.26
NEDD4-210ENST00000513957 ABCA8O94911 1581 aa13.45□□□□□ -0.26
NEDD4-210ENST00000513957 KDM5BQ9UGL1 1544 aa13.44□□□□□ -0.26
NEDD4-210ENST00000513957 NPM1P06748 294 aaKnown RBP eCLIP13.43□□□□□ -0.26
NEDD4-210ENST00000513957 KIF13AQ9H1H9 1805 aa13.43□□□□□ -0.26
NEDD4-210ENST00000513957 ZCCHC11Q5TAX3 1644 aaKnown RBP13.42□□□□□ -0.26
NEDD4-210ENST00000513957 RAPGEF6Q8TEU7 1601 aa13.4□□□□□ -0.26
NEDD4-210ENST00000513957 UBTFP17480 764 aaKnown RBP13.39□□□□□ -0.27
NEDD4-210ENST00000513957 PLB1Q6P1J6 1458 aa13.39□□□□□ -0.27
NEDD4-210ENST00000513957 DIP2BQ9P265 1576 aa13.39□□□□□ -0.27
NEDD4-210ENST00000513957 ABCC10Q5T3U5 1492 aa13.38□□□□□ -0.27
NEDD4-210ENST00000513957 TRHP20396 242 aaPredicted RBP13.35□□□□□ -0.27
NEDD4-210ENST00000513957 GLI2P10070 1586 aa13.35□□□□□ -0.27
NEDD4-210ENST00000513957 FHOD3Q2V2M9 1422 aa13.34□□□□□ -0.27
NEDD4-210ENST00000513957 FMN1Q68DA7 1419 aa13.34□□□□□ -0.27
NEDD4-210ENST00000513957 ARHGAP35Q9NRY4 1499 aa13.34□□□□□ -0.27
NEDD4-210ENST00000513957 ASXL2Q76L83 1435 aa13.33□□□□□ -0.28
NEDD4-210ENST00000513957 TTBK1Q5TCY1 1321 aaPredicted RBP13.33□□□□□ -0.28
NEDD4-210ENST00000513957 HECW1Q76N89 1606 aa13.31□□□□□ -0.28
NEDD4-210ENST00000513957 WDR7Q9Y4E6 1490 aa13.31□□□□□ -0.28
NEDD4-210ENST00000513957 NUP153P49790 1475 aaKnown RBP13.29□□□□□ -0.28
NEDD4-210ENST00000513957 MAP3K4Q9Y6R4 1608 aa13.28□□□□□ -0.28
NEDD4-210ENST00000513957 CFAP43Q8NDM7 1665 aa13.28□□□□□ -0.28
NEDD4-210ENST00000513957 P3H3Q8IVL6 736 aa13.28□□□□□ -0.28
NEDD4-210ENST00000513957 EPRSP07814 1512 aaKnown RBP13.28□□□□□ -0.28
NEDD4-210ENST00000513957 ATP10BO94823 1461 aa13.27□□□□□ -0.29
NEDD4-210ENST00000513957 CLIP1P30622 1438 aa13.26□□□□□ -0.29
NEDD4-210ENST00000513957 RANGAP1P46060 587 aaPredicted RBP13.25□□□□□ -0.29
NEDD4-210ENST00000513957 FAM69CQ0P6D2 419 aa13.25□□□□□ -0.29
NEDD4-210ENST00000513957 TSPOAP1O95153 1857 aa13.25□□□□□ -0.29
NEDD4-210ENST00000513957 PPRC1Q5VV67 1664 aaKnown RBP13.23□□□□□ -0.29
NEDD4-210ENST00000513957 FYCO1Q9BQS8 1478 aa13.23□□□□□ -0.29
NEDD4-210ENST00000513957 ABCA9Q8IUA7 1624 aa13.22□□□□□ -0.29
NEDD4-210ENST00000513957 PCF11O94913 1555 aaKnown RBP13.22□□□□□ -0.29
NEDD4-210ENST00000513957 CCDC18Q5T9S5 1454 aa13.22□□□□□ -0.29
NEDD4-210ENST00000513957 TEX14Q8IWB6 1497 aa13.22□□□□□ -0.29
NEDD4-210ENST00000513957 PPP6R1Q9UPN7 881 aa13.21□□□□□ -0.29
NEDD4-210ENST00000513957 LRRIQ1Q96JM4 1722 aa13.21□□□□□ -0.3
NEDD4-210ENST00000513957 CEP162Q5TB80 1403 aa13.21□□□□□ -0.3
NEDD4-210ENST00000513957 CASKIN1Q8WXD9 1431 aa13.21□□□□□ -0.3
NEDD4-210ENST00000513957 MAGI3Q5TCQ9 1506 aa13.18□□□□□ -0.3
NEDD4-210ENST00000513957 CDK13Q14004 1512 aaKnown RBP13.17□□□□□ -0.3
NEDD4-210ENST00000513957 KDM6BO15054 1643 aa13.17□□□□□ -0.3
NEDD4-210ENST00000513957 CFAP74Q9C0B2 1584 aa13.15□□□□□ -0.3
NEDD4-210ENST00000513957 CD109Q6YHK3 1445 aa13.14□□□□□ -0.31
NEDD4-210ENST00000513957 KIF14Q15058 1648 aa13.14□□□□□ -0.31
NEDD4-210ENST00000513957 PLEKHD1A6NEE1 506 aa13.14□□□□□ -0.31
NEDD4-210ENST00000513957 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.14□□□□□ -0.31
NEDD4-210ENST00000513957 HNRNPUL2Q1KMD3 747 aaKnown RBP13.14□□□□□ -0.31
NEDD4-210ENST00000513957 CDK11AQ9UQ88 783 aaPredicted RBP13.14□□□□□ -0.31
NEDD4-210ENST00000513957 MYO5CQ9NQX4 1742 aa13.12□□□□□ -0.31
NEDD4-210ENST00000513957 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.12□□□□□ -0.31
NEDD4-210ENST00000513957 PHLDB1Q86UU1 1377 aa13.11□□□□□ -0.31
NEDD4-210ENST00000513957 AMER1Q5JTC6 1135 aaPredicted RBP13.11□□□□□ -0.31
NEDD4-210ENST00000513957 ARAP3Q8WWN8 1544 aa13.11□□□□□ -0.31
NEDD4-210ENST00000513957 TROQ12816 1431 aaPredicted RBP13.11□□□□□ -0.31
NEDD4-210ENST00000513957 ARID3CA6NKF2 412 aa13.1□□□□□ -0.31
NEDD4-210ENST00000513957 TTC37Q6PGP7 1564 aa13.1□□□□□ -0.31
NEDD4-210ENST00000513957 NEO1Q92859 1461 aa13.1□□□□□ -0.31
NEDD4-210ENST00000513957 KCNH8Q96L42 1107 aa13.09□□□□□ -0.31
NEDD4-210ENST00000513957 VPS8Q8N3P4 1428 aa13.08□□□□□ -0.32
NEDD4-210ENST00000513957 ATP1B4Q9UN42 357 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms