RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SMARCA4P51532 1647 aa11.48□□□□□ -0.57
LIMCH1-216ENST00000512820 DHX57Q6P158 1386 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-216ENST00000512820 FBLN2P98095 1184 aa11.46□□□□□ -0.57
LIMCH1-216ENST00000512820 SETD5Q9C0A6 1442 aa11.46□□□□□ -0.57
LIMCH1-216ENST00000512820 TIMELESSQ9UNS1 1208 aa11.46□□□□□ -0.58
LIMCH1-216ENST00000512820 RAB3GAP2Q9H2M9 1393 aa11.45□□□□□ -0.58
LIMCH1-216ENST00000512820 SMARCA2P51531 1590 aa11.44□□□□□ -0.58
LIMCH1-216ENST00000512820 CARMIL1Q5VZK9 1371 aa11.44□□□□□ -0.58
LIMCH1-216ENST00000512820 CUX2O14529 1486 aa11.43□□□□□ -0.58
LIMCH1-216ENST00000512820 FHAD1B1AJZ9 1412 aa11.43□□□□□ -0.58
LIMCH1-216ENST00000512820 CCER2I3L3R5 266 aa11.42□□□□□ -0.58
LIMCH1-216ENST00000512820 NPM2Q86SE8 214 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-216ENST00000512820 CCDC136Q96JN2 1154 aa11.42□□□□□ -0.58
LIMCH1-216ENST00000512820 TSHZ2Q9NRE2 1034 aa11.42□□□□□ -0.58
LIMCH1-216ENST00000512820 TMC1Q8TDI8 760 aa11.41□□□□□ -0.58
LIMCH1-216ENST00000512820 SLC4A1APQ9BWU0 796 aaKnown RBP11.4□□□□□ -0.59
LIMCH1-216ENST00000512820 KCNH8Q96L42 1107 aa11.38□□□□□ -0.59
LIMCH1-216ENST00000512820 SALL2Q9Y467 1007 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-216ENST00000512820 ATAD2BQ9ULI0 1458 aa11.38□□□□□ -0.59
LIMCH1-216ENST00000512820 NBR1Q14596 966 aa11.37□□□□□ -0.59
LIMCH1-216ENST00000512820 RBM19Q9Y4C8 960 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-216ENST00000512820 PPP1R15AO75807 674 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-216ENST00000512820 PPP4R2Q9NY27 417 aa11.35□□□□□ -0.59
LIMCH1-216ENST00000512820 ZBTB47Q9UFB7 747 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-216ENST00000512820 ARHGAP35Q9NRY4 1499 aa11.34□□□□□ -0.59
LIMCH1-216ENST00000512820 KDM2AQ9Y2K7 1162 aa11.33□□□□□ -0.6
LIMCH1-216ENST00000512820 KIF21BO75037 1637 aa11.32□□□□□ -0.6
LIMCH1-216ENST00000512820 SENP3-EIF4A1A0A087X0R7 540 aa11.31□□□□□ -0.6
LIMCH1-216ENST00000512820 HSPA5P11021 654 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-216ENST00000512820 B4GALNT3Q6L9W6 998 aa11.29□□□□□ -0.6
LIMCH1-216ENST00000512820 TSPY4P0CV99 314 aa11.29□□□□□ -0.6
LIMCH1-216ENST00000512820 TSPY10P0CW01 314 aa11.29□□□□□ -0.6
LIMCH1-216ENST00000512820 CANXP27824 592 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-216ENST00000512820 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.25□□□□□ -0.61
LIMCH1-216ENST00000512820 FHOD3Q2V2M9 1422 aa11.24□□□□□ -0.61
LIMCH1-216ENST00000512820 CFDP1Q9UEE9 299 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-216ENST00000512820 SYNJ1O43426 1573 aa11.24□□□□□ -0.61
LIMCH1-216ENST00000512820 FOXD1Q16676 465 aa11.23□□□□□ -0.61
LIMCH1-216ENST00000512820 FMN1Q68DA7 1419 aa11.22□□□□□ -0.61
LIMCH1-216ENST00000512820 CARD11Q9BXL7 1154 aa11.22□□□□□ -0.61
LIMCH1-216ENST00000512820 ERICH6BQ5W0A0 696 aa11.22□□□□□ -0.61
LIMCH1-216ENST00000512820 CHMP7Q8WUX9 453 aaPredicted RBP11.21□□□□□ -0.61
LIMCH1-216ENST00000512820 MPHOSPH9Q99550 1183 aa11.2□□□□□ -0.62
LIMCH1-216ENST00000512820 BCL11AQ9H165 835 aa11.2□□□□□ -0.62
LIMCH1-216ENST00000512820 NOP58Q9Y2X3 529 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-216ENST00000512820 CADPSQ9ULU8 1353 aa11.2□□□□□ -0.62
LIMCH1-216ENST00000512820 ARAP1Q96P48 1450 aa11.2□□□□□ -0.62
LIMCH1-216ENST00000512820 IGF1RP08069 1367 aa11.2□□□□□ -0.62
LIMCH1-216ENST00000512820 RRBP1Q9P2E9 1410 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-216ENST00000512820 WDR43Q15061 677 aaKnown RBP eCLIP11.19□□□□□ -0.62
LIMCH1-216ENST00000512820 PLEKHD1A6NEE1 506 aa11.18□□□□□ -0.62
LIMCH1-216ENST00000512820 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-216ENST00000512820 L3MBTL2Q969R5 705 aa11.18□□□□□ -0.62
LIMCH1-216ENST00000512820 EIF4G1Q04637 1599 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-216ENST00000512820 RGL3Q3MIN7 710 aa11.18□□□□□ -0.62
LIMCH1-216ENST00000512820 PHLDB1Q86UU1 1377 aa11.17□□□□□ -0.62
LIMCH1-216ENST00000512820 TDRD9Q8NDG6 1382 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-216ENST00000512820 ERICH3Q5RHP9 1530 aa11.16□□□□□ -0.62
LIMCH1-216ENST00000512820 PRXQ9BXM0 1461 aa11.15□□□□□ -0.62
LIMCH1-216ENST00000512820 LRRC9Q6ZRR7 1453 aa11.13□□□□□ -0.63
LIMCH1-216ENST00000512820 CCDC18Q5T9S5 1454 aa11.12□□□□□ -0.63
LIMCH1-216ENST00000512820 DDRGK1Q96HY6 314 aa11.12□□□□□ -0.63
LIMCH1-216ENST00000512820 PKD2Q13563 968 aa11.11□□□□□ -0.63
LIMCH1-216ENST00000512820 DEKP35659 375 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-216ENST00000512820 DCAF11Q8TEB1 546 aa11.11□□□□□ -0.63
LIMCH1-216ENST00000512820 UPF2Q9HAU5 1272 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-216ENST00000512820 CHGAP10645 457 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-216ENST00000512820 PRKRIP1Q9H875 184 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-216ENST00000512820 LAS1LQ9Y4W2 734 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-216ENST00000512820 TOP2BQ02880 1626 aa11.08□□□□□ -0.64
LIMCH1-216ENST00000512820 EIF5BO60841 1220 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-216ENST00000512820 CC2D1BQ5T0F9 858 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-216ENST00000512820 FGD5Q6ZNL6 1462 aa11.08□□□□□ -0.64
LIMCH1-216ENST00000512820 NUDCQ9Y266 331 aa11.08□□□□□ -0.64
LIMCH1-216ENST00000512820 FGD6Q6ZV73 1430 aa11.08□□□□□ -0.64
LIMCH1-216ENST00000512820 PPM1GO15355 546 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-216ENST00000512820 KNSTRNQ9Y448 316 aa11.07□□□□□ -0.64
LIMCH1-216ENST00000512820 NCAPD3P42695 1498 aa11.07□□□□□ -0.64
LIMCH1-216ENST00000512820 NEFMP07197 916 aa11.07□□□□□ -0.64
LIMCH1-216ENST00000512820 UACAQ9BZF9 1416 aa11.06□□□□□ -0.64
LIMCH1-216ENST00000512820 FANCD2Q9BXW9 1451 aa11.05□□□□□ -0.64
LIMCH1-216ENST00000512820 ZBED9Q6R2W3 1325 aa11.05□□□□□ -0.64
LIMCH1-216ENST00000512820 FANCIQ9NVI1 1328 aa11.05□□□□□ -0.64
LIMCH1-216ENST00000512820 RCAN3Q9UKA8 241 aa11.03□□□□□ -0.64
LIMCH1-216ENST00000512820 RALBP1Q15311 655 aa11.03□□□□□ -0.64
LIMCH1-216ENST00000512820 CDCA8Q53HL2 280 aa11.03□□□□□ -0.64
LIMCH1-216ENST00000512820 CUX1P39880 1505 aa11.02□□□□□ -0.64
LIMCH1-216ENST00000512820 CFTRP13569 1480 aa11.02□□□□□ -0.65
LIMCH1-216ENST00000512820 PDS5BQ9NTI5 1447 aa11.02□□□□□ -0.65
LIMCH1-216ENST00000512820 RAD54L2Q9Y4B4 1467 aa11.02□□□□□ -0.65
LIMCH1-216ENST00000512820 CASKIN1Q8WXD9 1431 aa11.02□□□□□ -0.65
LIMCH1-216ENST00000512820 WASHC2AQ641Q2 1341 aa11.02□□□□□ -0.65
LIMCH1-216ENST00000512820 NUP155O75694 1391 aa11.01□□□□□ -0.65
LIMCH1-216ENST00000512820 MYOM3Q5VTT5 1437 aa11.01□□□□□ -0.65
LIMCH1-216ENST00000512820 RGS3P49796 1198 aa11.01□□□□□ -0.65
LIMCH1-216ENST00000512820 IPO9Q96P70 1041 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-216ENST00000512820 KTN1Q86UP2 1357 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-216ENST00000512820 TMF1P82094 1093 aa11.01□□□□□ -0.65
LIMCH1-216ENST00000512820 WDR97A6NE52 1622 aa11□□□□□ -0.65
LIMCH1-216ENST00000512820 TCERG1O14776 1098 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms