RNA–Protein interactions for RNA: ENST00000512229.6

PCDHA4-202, Transcript of protocadherin alpha 4, humanhuman

TSL 1 (best) BASIC

Gene PCDHA4, Length 4,163 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4-202ENST00000512229 KANK4Q5T7N3 995 aaPredicted RBP18.16■□□□□ 0.5
PCDHA4-202ENST00000512229 RAPGEF2Q9Y4G8 1499 aa18.14■□□□□ 0.49
PCDHA4-202ENST00000512229 ACIN1Q9UKV3 1341 aaKnown RBP18.14■□□□□ 0.49
PCDHA4-202ENST00000512229 EIF4G1Q04637 1599 aaKnown RBP18.12■□□□□ 0.49
PCDHA4-202ENST00000512229 FANCD2Q9BXW9 1451 aa18.11■□□□□ 0.49
PCDHA4-202ENST00000512229 CHGAP10645 457 aaKnown RBP18.09■□□□□ 0.49
PCDHA4-202ENST00000512229 CLSPNQ9HAW4 1339 aa18.08■□□□□ 0.48
PCDHA4-202ENST00000512229 KDM2AQ9Y2K7 1162 aa18.05■□□□□ 0.48
PCDHA4-202ENST00000512229 HIRIP3Q9BW71 556 aaPredicted RBP18.05■□□□□ 0.48
PCDHA4-202ENST00000512229 ESF1Q9H501 851 aaKnown RBP18.04■□□□□ 0.48
PCDHA4-202ENST00000512229 FMN1Q68DA7 1419 aa18.03■□□□□ 0.48
PCDHA4-202ENST00000512229 MIER1Q8N108 512 aa18.01■□□□□ 0.47
PCDHA4-202ENST00000512229 BCANQ96GW7 911 aa18.01■□□□□ 0.47
PCDHA4-202ENST00000512229 EIF4G2P78344 907 aaKnown RBP eCLIP18.01■□□□□ 0.47
PCDHA4-202ENST00000512229 SIN3AQ96ST3 1273 aa18■□□□□ 0.47
PCDHA4-202ENST00000512229 IGF1RP08069 1367 aa17.98■□□□□ 0.47
PCDHA4-202ENST00000512229 STAG3Q9UJ98 1225 aa17.97■□□□□ 0.47
PCDHA4-202ENST00000512229 CARMIL2Q6F5E8 1435 aa17.95■□□□□ 0.46
PCDHA4-202ENST00000512229 FHOD3Q2V2M9 1422 aa17.95■□□□□ 0.46
PCDHA4-202ENST00000512229 ARHGAP35Q9NRY4 1499 aa17.95■□□□□ 0.46
PCDHA4-202ENST00000512229 FGD5Q6ZNL6 1462 aa17.94■□□□□ 0.46
PCDHA4-202ENST00000512229 HNRNPUQ00839 825 aaKnown RBP eCLIP17.92■□□□□ 0.46
PCDHA4-202ENST00000512229 CFTRP13569 1480 aa17.92■□□□□ 0.46
PCDHA4-202ENST00000512229 SETD5Q9C0A6 1442 aa17.91■□□□□ 0.46
PCDHA4-202ENST00000512229 RGL3Q3MIN7 710 aa17.91■□□□□ 0.46
PCDHA4-202ENST00000512229 BICRAQ9NZM4 1560 aa17.9■□□□□ 0.46
PCDHA4-202ENST00000512229 FAM9BQ8IZU0 186 aa17.9■□□□□ 0.46
PCDHA4-202ENST00000512229 DAXXQ9UER7 740 aaPredicted RBP17.9■□□□□ 0.46
PCDHA4-202ENST00000512229 JPH4Q96JJ6 628 aa17.88■□□□□ 0.45
PCDHA4-202ENST00000512229 TIMELESSQ9UNS1 1208 aa17.87■□□□□ 0.45
PCDHA4-202ENST00000512229 RAD54L2Q9Y4B4 1467 aa17.87■□□□□ 0.45
PCDHA4-202ENST00000512229 TMC1Q8TDI8 760 aa17.85■□□□□ 0.45
PCDHA4-202ENST00000512229 HMGXB3Q12766 1538 aa17.83■□□□□ 0.45
PCDHA4-202ENST00000512229 MRS2Q9HD23 443 aa17.83■□□□□ 0.44
PCDHA4-202ENST00000512229 RAB3GAP2Q9H2M9 1393 aa17.83■□□□□ 0.44
PCDHA4-202ENST00000512229 GAPVD1Q14C86 1478 aa17.82■□□□□ 0.44
PCDHA4-202ENST00000512229 NEFMP07197 916 aa17.8■□□□□ 0.44
PCDHA4-202ENST00000512229 SYNJ1O43426 1573 aa17.79■□□□□ 0.44
PCDHA4-202ENST00000512229 PLPPR3Q6T4P5 718 aa17.78■□□□□ 0.44
PCDHA4-202ENST00000512229 FKBP8Q14318 412 aa17.76■□□□□ 0.43
PCDHA4-202ENST00000512229 CARD11Q9BXL7 1154 aa17.76■□□□□ 0.43
PCDHA4-202ENST00000512229 CC2D2AQ9P2K1 1620 aa17.75■□□□□ 0.43
PCDHA4-202ENST00000512229 NESP48681 1621 aa17.74■□□□□ 0.43
PCDHA4-202ENST00000512229 SALL2Q9Y467 1007 aaPredicted RBP17.73■□□□□ 0.43
PCDHA4-202ENST00000512229 CANXP27824 592 aaKnown RBP17.71■□□□□ 0.43
PCDHA4-202ENST00000512229 EFCAB2Q5VUJ9 269 aa17.7■□□□□ 0.42
PCDHA4-202ENST00000512229 MPHOSPH9Q99550 1183 aa17.7■□□□□ 0.42
PCDHA4-202ENST00000512229 PKD2Q13563 968 aa17.69■□□□□ 0.42
PCDHA4-202ENST00000512229 FOXD1Q16676 465 aa17.69■□□□□ 0.42
PCDHA4-202ENST00000512229 CCDC18Q5T9S5 1454 aa17.69■□□□□ 0.42
PCDHA4-202ENST00000512229 AQRO60306 1485 aaKnown RBP eCLIP17.68■□□□□ 0.42
PCDHA4-202ENST00000512229 KIF21BO75037 1637 aa17.67■□□□□ 0.42
PCDHA4-202ENST00000512229 TOP2BQ02880 1626 aa17.67■□□□□ 0.42
PCDHA4-202ENST00000512229 DCAF11Q8TEB1 546 aa17.67■□□□□ 0.42
PCDHA4-202ENST00000512229 CUX1P39880 1505 aa17.66■□□□□ 0.42
PCDHA4-202ENST00000512229 PRXQ9BXM0 1461 aa17.66■□□□□ 0.42
PCDHA4-202ENST00000512229 ANKRD30AQ9BXX3 1397 aa17.65■□□□□ 0.42
PCDHA4-202ENST00000512229 ERICH3Q5RHP9 1530 aa17.65■□□□□ 0.42
PCDHA4-202ENST00000512229 WDR43Q15061 677 aaKnown RBP eCLIP17.64■□□□□ 0.41
PCDHA4-202ENST00000512229 SENP3Q9H4L4 574 aaPredicted RBP17.64■□□□□ 0.41
PCDHA4-202ENST00000512229 MYT1Q01538 1121 aa17.63■□□□□ 0.41
PCDHA4-202ENST00000512229 PPP1R15AO75807 674 aaPredicted RBP17.63■□□□□ 0.41
PCDHA4-202ENST00000512229 CDCA8Q53HL2 280 aa17.63■□□□□ 0.41
PCDHA4-202ENST00000512229 NUP155O75694 1391 aa17.62■□□□□ 0.41
PCDHA4-202ENST00000512229 HNRNPMP52272 730 aaKnown RBP eCLIP17.62■□□□□ 0.41
PCDHA4-202ENST00000512229 RSPH4AQ5TD94 716 aa17.62■□□□□ 0.41
PCDHA4-202ENST00000512229 PTPRGP23470 1445 aa17.62■□□□□ 0.41
PCDHA4-202ENST00000512229 TOPBP1Q92547 1522 aa17.61■□□□□ 0.41
PCDHA4-202ENST00000512229 SCAF1Q9H7N4 1312 aaKnown RBP17.61■□□□□ 0.41
PCDHA4-202ENST00000512229 PEG3Q9GZU2 1588 aa17.61■□□□□ 0.41
PCDHA4-202ENST00000512229 DHX57Q6P158 1386 aaKnown RBP17.6■□□□□ 0.41
PCDHA4-202ENST00000512229 POLA1P09884 1462 aaPredicted RBP17.59■□□□□ 0.41
PCDHA4-202ENST00000512229 SLC24A1O60721 1099 aa17.59■□□□□ 0.41
PCDHA4-202ENST00000512229 ARAP1Q96P48 1450 aa17.59■□□□□ 0.41
PCDHA4-202ENST00000512229 KANK1Q14678 1352 aa17.58■□□□□ 0.4
PCDHA4-202ENST00000512229 ARID4BQ4LE39 1312 aaPredicted RBP17.58■□□□□ 0.4
PCDHA4-202ENST00000512229 DNAJC5BQ9UF47 199 aa17.58■□□□□ 0.4
PCDHA4-202ENST00000512229 GRIN2BQ13224 1484 aa17.57■□□□□ 0.4
PCDHA4-202ENST00000512229 HSPA5P11021 654 aaKnown RBP17.56■□□□□ 0.4
PCDHA4-202ENST00000512229 ZBTB47Q9UFB7 747 aaPredicted RBP17.56■□□□□ 0.4
PCDHA4-202ENST00000512229 KNSTRNQ9Y448 316 aa17.56■□□□□ 0.4
PCDHA4-202ENST00000512229 UNC13AQ9UPW8 1703 aa17.55■□□□□ 0.4
PCDHA4-202ENST00000512229 GGT6Q6P531 493 aa17.54■□□□□ 0.4
PCDHA4-202ENST00000512229 L3MBTL2Q969R5 705 aa17.54■□□□□ 0.4
PCDHA4-202ENST00000512229 PHLDB1Q86UU1 1377 aa17.52■□□□□ 0.39
PCDHA4-202ENST00000512229 LRRC9Q6ZRR7 1453 aa17.51■□□□□ 0.39
PCDHA4-202ENST00000512229 MRC2Q9UBG0 1479 aa17.51■□□□□ 0.39
PCDHA4-202ENST00000512229 CASKIN1Q8WXD9 1431 aa17.51■□□□□ 0.39
PCDHA4-202ENST00000512229 SPAG9O60271 1321 aaKnown RBP17.49■□□□□ 0.39
PCDHA4-202ENST00000512229 CCDC136Q96JN2 1154 aa17.48■□□□□ 0.39
PCDHA4-202ENST00000512229 FGD6Q6ZV73 1430 aa17.48■□□□□ 0.39
PCDHA4-202ENST00000512229 KIF3BO15066 747 aa17.47■□□□□ 0.39
PCDHA4-202ENST00000512229 TMF1P82094 1093 aa17.47■□□□□ 0.39
PCDHA4-202ENST00000512229 DNMBPQ6XZF7 1577 aa17.47■□□□□ 0.39
PCDHA4-202ENST00000512229 RTL5Q5HYW3 569 aaPredicted RBP17.47■□□□□ 0.39
PCDHA4-202ENST00000512229 IRX6P78412 446 aaPredicted RBP17.47■□□□□ 0.39
PCDHA4-202ENST00000512229 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.46■□□□□ 0.38
PCDHA4-202ENST00000512229 MYOM3Q5VTT5 1437 aa17.45■□□□□ 0.38
PCDHA4-202ENST00000512229 BCL11AQ9H165 835 aa17.45■□□□□ 0.38
PCDHA4-202ENST00000512229 IFT140Q96RY7 1462 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms