RNA–Protein interactions for RNA: ENST00000511426.5

SCLT1-209, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,696 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-209ENST00000511426 ARHGAP35Q9NRY4 1499 aa23.9■■□□□ 1.42
SCLT1-209ENST00000511426 GRIN2AQ12879 1464 aa23.88■■□□□ 1.41
SCLT1-209ENST00000511426 ARAP1Q96P48 1450 aa23.87■■□□□ 1.41
SCLT1-209ENST00000511426 IQGAP2Q13576 1575 aa23.8■■□□□ 1.4
SCLT1-209ENST00000511426 KIAA0586Q9BVV6 1533 aa23.8■■□□□ 1.4
SCLT1-209ENST00000511426 SAMD9Q5K651 1589 aa23.77■■□□□ 1.4
SCLT1-209ENST00000511426 CHMP7Q8WUX9 453 aaPredicted RBP23.76■■□□□ 1.39
SCLT1-209ENST00000511426 RANGAP1P46060 587 aaPredicted RBP23.75■■□□□ 1.39
SCLT1-209ENST00000511426 NUP160Q12769 1436 aa23.75■■□□□ 1.39
SCLT1-209ENST00000511426 UGGT2Q9NYU1 1516 aa23.73■■□□□ 1.39
SCLT1-209ENST00000511426 TRIM26Q12899 539 aaPredicted RBP23.7■■□□□ 1.38
SCLT1-209ENST00000511426 FMN1Q68DA7 1419 aa23.69■■□□□ 1.38
SCLT1-209ENST00000511426 APLP2Q06481 763 aa23.68■■□□□ 1.38
SCLT1-209ENST00000511426 CEP170Q5SW79 1584 aa23.67■■□□□ 1.38
SCLT1-209ENST00000511426 MAP3K1Q13233 1512 aa23.66■■□□□ 1.38
SCLT1-209ENST00000511426 FHOD3Q2V2M9 1422 aa23.62■■□□□ 1.37
SCLT1-209ENST00000511426 FYCO1Q9BQS8 1478 aa23.61■■□□□ 1.37
SCLT1-209ENST00000511426 CASKIN1Q8WXD9 1431 aa23.59■■□□□ 1.37
SCLT1-209ENST00000511426 FBLN2P98095 1184 aa23.58■■□□□ 1.37
SCLT1-209ENST00000511426 KIAA0556O60303 1618 aa23.55■■□□□ 1.36
SCLT1-209ENST00000511426 CHD1O14646 1710 aa23.55■■□□□ 1.36
SCLT1-209ENST00000511426 PCF11O94913 1555 aaKnown RBP23.55■■□□□ 1.36
SCLT1-209ENST00000511426 DISP1Q96F81 1524 aa23.53■■□□□ 1.36
SCLT1-209ENST00000511426 CARMIL2Q6F5E8 1435 aa23.51■■□□□ 1.35
SCLT1-209ENST00000511426 P3H3Q8IVL6 736 aa23.51■■□□□ 1.35
SCLT1-209ENST00000511426 TIAM1Q13009 1591 aa23.5■■□□□ 1.35
SCLT1-209ENST00000511426 PCGF6Q9BYE7 350 aa23.5■■□□□ 1.35
SCLT1-209ENST00000511426 CFAP43Q8NDM7 1665 aa23.48■■□□□ 1.35
SCLT1-209ENST00000511426 JPH4Q96JJ6 628 aa23.47■■□□□ 1.35
SCLT1-209ENST00000511426 CCDC18Q5T9S5 1454 aa23.42■■□□□ 1.34
SCLT1-209ENST00000511426 HECW1Q76N89 1606 aa23.42■■□□□ 1.34
SCLT1-209ENST00000511426 SHROOM2Q13796 1616 aa23.42■■□□□ 1.34
SCLT1-209ENST00000511426 PPARGC1BQ86YN6 1023 aaKnown RBP23.4■■□□□ 1.34
SCLT1-209ENST00000511426 LRRC9Q6ZRR7 1453 aa23.39■■□□□ 1.34
SCLT1-209ENST00000511426 CLASP1Q7Z460 1538 aa23.38■■□□□ 1.33
SCLT1-209ENST00000511426 KANK4Q5T7N3 995 aaPredicted RBP23.32■■□□□ 1.32
SCLT1-209ENST00000511426 PRG4Q92954 1404 aaPredicted RBP23.32■■□□□ 1.32
SCLT1-209ENST00000511426 RAPGEF6Q8TEU7 1601 aa23.3■■□□□ 1.32
SCLT1-209ENST00000511426 EPRSP07814 1512 aaKnown RBP23.28■■□□□ 1.32
SCLT1-209ENST00000511426 ATP1B4Q9UN42 357 aaPredicted RBP23.27■■□□□ 1.32
SCLT1-209ENST00000511426 EHBP1L1Q8N3D4 1523 aa23.26■■□□□ 1.31
SCLT1-209ENST00000511426 LRRIQ1Q96JM4 1722 aa23.25■■□□□ 1.31
SCLT1-209ENST00000511426 RRBP1Q9P2E9 1410 aaKnown RBP23.24■■□□□ 1.31
SCLT1-209ENST00000511426 TTBK1Q5TCY1 1321 aaPredicted RBP23.23■■□□□ 1.31
SCLT1-209ENST00000511426 MTUS2Q5JR59 1369 aa23.23■■□□□ 1.31
SCLT1-209ENST00000511426 NUP153P49790 1475 aaKnown RBP23.23■■□□□ 1.31
SCLT1-209ENST00000511426 ABCA8O94911 1581 aa23.22■■□□□ 1.31
SCLT1-209ENST00000511426 PTPRGP23470 1445 aa23.2■■□□□ 1.31
SCLT1-209ENST00000511426 PLB1Q6P1J6 1458 aa23.17■■□□□ 1.3
SCLT1-209ENST00000511426 SUPT6HQ7KZ85 1726 aaKnown RBP23.16■■□□□ 1.3
SCLT1-209ENST00000511426 CDK11AQ9UQ88 783 aaPredicted RBP23.16■■□□□ 1.3
SCLT1-209ENST00000511426 OSCARQ8IYS5 282 aa23.14■■□□□ 1.29
SCLT1-209ENST00000511426 CCNB3Q8WWL7 1395 aa23.14■■□□□ 1.29
SCLT1-209ENST00000511426 CDK13Q14004 1512 aaKnown RBP23.13■■□□□ 1.29
SCLT1-209ENST00000511426 ARHGEF11O15085 1522 aa23.12■■□□□ 1.29
SCLT1-209ENST00000511426 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.12■■□□□ 1.29
SCLT1-209ENST00000511426 UACAQ9BZF9 1416 aa23.1■■□□□ 1.29
SCLT1-209ENST00000511426 PHLDB1Q86UU1 1377 aa23.09■■□□□ 1.29
SCLT1-209ENST00000511426 MAGI3Q5TCQ9 1506 aa23.09■■□□□ 1.29
SCLT1-209ENST00000511426 NCOA2Q15596 1464 aa23.09■■□□□ 1.29
SCLT1-209ENST00000511426 ERCC6L2Q5T890 1561 aa23.06■■□□□ 1.28
SCLT1-209ENST00000511426 UHRF1BP1LA0JNW5 1464 aa23.06■■□□□ 1.28
SCLT1-209ENST00000511426 ABCC2Q92887 1545 aa23.05■■□□□ 1.28
SCLT1-209ENST00000511426 TROQ12816 1431 aaPredicted RBP23.05■■□□□ 1.28
SCLT1-209ENST00000511426 MYOM3Q5VTT5 1437 aa23.03■■□□□ 1.28
SCLT1-209ENST00000511426 ATP10BO94823 1461 aa23.02■■□□□ 1.28
SCLT1-209ENST00000511426 FGD6Q6ZV73 1430 aa23.01■■□□□ 1.27
SCLT1-209ENST00000511426 ADCY10Q96PN6 1610 aa23.01■■□□□ 1.27
SCLT1-209ENST00000511426 MIA2Q96PC5 1412 aa22.99■■□□□ 1.27
SCLT1-209ENST00000511426 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.96■■□□□ 1.27
SCLT1-209ENST00000511426 HNRNPUL2Q1KMD3 747 aaKnown RBP22.96■■□□□ 1.27
SCLT1-209ENST00000511426 PLEKHD1A6NEE1 506 aa22.94■■□□□ 1.26
SCLT1-209ENST00000511426 TCOF1Q13428 1488 aaKnown RBP22.92■■□□□ 1.26
SCLT1-209ENST00000511426 KDM5BQ9UGL1 1544 aa22.92■■□□□ 1.26
SCLT1-209ENST00000511426 KIF14Q15058 1648 aa22.92■■□□□ 1.26
SCLT1-209ENST00000511426 ARID3CA6NKF2 412 aa22.9■■□□□ 1.26
SCLT1-209ENST00000511426 ITSN2Q9NZM3 1697 aa22.89■■□□□ 1.25
SCLT1-209ENST00000511426 PTPN23Q9H3S7 1636 aa22.87■■□□□ 1.25
SCLT1-209ENST00000511426 HRCP23327 699 aa22.87■■□□□ 1.25
SCLT1-209ENST00000511426 FAM50AQ14320 339 aaKnown RBP22.84■■□□□ 1.25
SCLT1-209ENST00000511426 ZEB1P37275 1124 aaPredicted RBP22.83■■□□□ 1.24
SCLT1-209ENST00000511426 ZCCHC11Q5TAX3 1644 aaKnown RBP22.83■■□□□ 1.24
SCLT1-209ENST00000511426 ABCC10Q5T3U5 1492 aa22.82■■□□□ 1.24
SCLT1-209ENST00000511426 GPATCH8Q9UKJ3 1502 aaKnown RBP22.8■■□□□ 1.24
SCLT1-209ENST00000511426 AKNAQ7Z591 1439 aa22.73■■□□□ 1.23
SCLT1-209ENST00000511426 CFDP1Q9UEE9 299 aaPredicted RBP22.72■■□□□ 1.23
SCLT1-209ENST00000511426 CDC42BPAQ5VT25 1732 aa22.71■■□□□ 1.23
SCLT1-209ENST00000511426 SETD5Q9C0A6 1442 aa22.7■■□□□ 1.22
SCLT1-209ENST00000511426 PREX2Q70Z35 1606 aa22.7■■□□□ 1.22
SCLT1-209ENST00000511426 CCER1Q8TC90 406 aaPredicted RBP22.69■■□□□ 1.22
SCLT1-209ENST00000511426 DNMT1P26358 1616 aaKnown RBP22.69■■□□□ 1.22
SCLT1-209ENST00000511426 WDR7Q9Y4E6 1490 aa22.69■■□□□ 1.22
SCLT1-209ENST00000511426 CAMSAP2Q08AD1 1489 aa22.68■■□□□ 1.22
SCLT1-209ENST00000511426 HFM1A2PYH4 1435 aa22.68■■□□□ 1.22
SCLT1-209ENST00000511426 ITGAEP38570 1179 aa22.68■■□□□ 1.22
SCLT1-209ENST00000511426 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.68■■□□□ 1.227e-7■■□□□ 14.3
SCLT1-209ENST00000511426 CLSPNQ9HAW4 1339 aa22.66■■□□□ 1.22
SCLT1-209ENST00000511426 ACIN1Q9UKV3 1341 aaKnown RBP22.66■■□□□ 1.22
SCLT1-209ENST00000511426 ARAP3Q8WWN8 1544 aa22.65■■□□□ 1.22
SCLT1-209ENST00000511426 DAPK1P53355 1430 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms