RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 KIAA0586Q9BVV6 1533 aa24.15■■□□□ 1.46
RNF4-213ENST00000509388 CLASP1Q7Z460 1538 aa24.12■■□□□ 1.45
RNF4-213ENST00000509388 JPH4Q96JJ6 628 aa24.12■■□□□ 1.45
RNF4-213ENST00000509388 DNAJC5Q9H3Z4 198 aa24.12■■□□□ 1.45
RNF4-213ENST00000509388 IQGAP2Q13576 1575 aa24.03■■□□□ 1.44
RNF4-213ENST00000509388 RANGAP1P46060 587 aaPredicted RBP24.03■■□□□ 1.44
RNF4-213ENST00000509388 LOC105371045A0A1W2PR82 267 aa24.02■■□□□ 1.44
RNF4-213ENST00000509388 PRG4Q92954 1404 aaPredicted RBP24■■□□□ 1.43
RNF4-213ENST00000509388 CTTNBP2Q8WZ74 1663 aa23.98■■□□□ 1.43
RNF4-213ENST00000509388 CARMIL2Q6F5E8 1435 aa23.95■■□□□ 1.42
RNF4-213ENST00000509388 TNIKQ9UKE5 1360 aa23.94■■□□□ 1.42
RNF4-213ENST00000509388 SHROOM2Q13796 1616 aa23.93■■□□□ 1.42
RNF4-213ENST00000509388 ARHGEF11O15085 1522 aa23.92■■□□□ 1.42
RNF4-213ENST00000509388 UGGT2Q9NYU1 1516 aa23.91■■□□□ 1.42
RNF4-213ENST00000509388 P3H3Q8IVL6 736 aa23.87■■□□□ 1.41
RNF4-213ENST00000509388 TTBK1Q5TCY1 1321 aaPredicted RBP23.86■■□□□ 1.41
RNF4-213ENST00000509388 ERCC6L2Q5T890 1561 aa23.84■■□□□ 1.41
RNF4-213ENST00000509388 RIMBP3CA6NJZ7 1639 aa23.84■■□□□ 1.41
RNF4-213ENST00000509388 RIMBP3BA6NNM3 1639 aa23.84■■□□□ 1.41
RNF4-213ENST00000509388 RIMBP3Q9UFD9 1639 aa23.84■■□□□ 1.41
RNF4-213ENST00000509388 DISP1Q96F81 1524 aa23.83■■□□□ 1.41
RNF4-213ENST00000509388 CYB5RLQ6IPT4 315 aa23.82■■□□□ 1.4
RNF4-213ENST00000509388 PTPRGP23470 1445 aa23.79■■□□□ 1.4
RNF4-213ENST00000509388 KIAA0556O60303 1618 aa23.78■■□□□ 1.4
RNF4-213ENST00000509388 CLIP1P30622 1438 aa23.76■■□□□ 1.39
RNF4-213ENST00000509388 EFCAB5A4FU69 1503 aa23.76■■□□□ 1.39
RNF4-213ENST00000509388 ARAP1Q96P48 1450 aa23.75■■□□□ 1.39
RNF4-213ENST00000509388 CEP162Q5TB80 1403 aa23.73■■□□□ 1.39
RNF4-213ENST00000509388 SAMD9Q5K651 1589 aa23.73■■□□□ 1.39
RNF4-213ENST00000509388 FHOD3Q2V2M9 1422 aa23.72■■□□□ 1.39
RNF4-213ENST00000509388 ARHGAP35Q9NRY4 1499 aa23.71■■□□□ 1.39
RNF4-213ENST00000509388 FMN1Q68DA7 1419 aa23.61■■□□□ 1.37
RNF4-213ENST00000509388 UACAQ9BZF9 1416 aa23.61■■□□□ 1.37
RNF4-213ENST00000509388 NPM1P06748 294 aaKnown RBP eCLIP23.61■■□□□ 1.37
RNF4-213ENST00000509388 ATP1B4Q9UN42 357 aaPredicted RBP23.59■■□□□ 1.37
RNF4-213ENST00000509388 PLB1Q6P1J6 1458 aa23.56■■□□□ 1.36
RNF4-213ENST00000509388 UHRF1BP1LA0JNW5 1464 aa23.51■■□□□ 1.35
RNF4-213ENST00000509388 ABCC2Q92887 1545 aa23.5■■□□□ 1.35
RNF4-213ENST00000509388 ARID3CA6NKF2 412 aa23.5■■□□□ 1.35
RNF4-213ENST00000509388 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.5■■□□□ 1.35
RNF4-213ENST00000509388 HNRNPUL2Q1KMD3 747 aaKnown RBP23.5■■□□□ 1.35
RNF4-213ENST00000509388 ABCA8O94911 1581 aa23.49■■□□□ 1.35
RNF4-213ENST00000509388 RAPGEF6Q8TEU7 1601 aa23.46■■□□□ 1.35
RNF4-213ENST00000509388 ADCY10Q96PN6 1610 aa23.46■■□□□ 1.35
RNF4-213ENST00000509388 CASKIN1Q8WXD9 1431 aa23.43■■□□□ 1.34
RNF4-213ENST00000509388 VPS8Q8N3P4 1428 aa23.42■■□□□ 1.34
RNF4-213ENST00000509388 NUP153P49790 1475 aaKnown RBP23.4■■□□□ 1.34
RNF4-213ENST00000509388 KDM5BQ9UGL1 1544 aa23.39■■□□□ 1.34
RNF4-213ENST00000509388 HECW1Q76N89 1606 aa23.37■■□□□ 1.33
RNF4-213ENST00000509388 FYCO1Q9BQS8 1478 aa23.37■■□□□ 1.33
RNF4-213ENST00000509388 ATP10BO94823 1461 aa23.36■■□□□ 1.33
RNF4-213ENST00000509388 CDK11AQ9UQ88 783 aaPredicted RBP23.36■■□□□ 1.33
RNF4-213ENST00000509388 PCF11O94913 1555 aaKnown RBP23.35■■□□□ 1.33
RNF4-213ENST00000509388 APLP2Q06481 763 aa23.35■■□□□ 1.33
RNF4-213ENST00000509388 PLEKHD1A6NEE1 506 aa23.34■■□□□ 1.33
RNF4-213ENST00000509388 EPRSP07814 1512 aaKnown RBP23.33■■□□□ 1.32
RNF4-213ENST00000509388 ZCCHC11Q5TAX3 1644 aaKnown RBP23.3■■□□□ 1.32
RNF4-213ENST00000509388 CCDC18Q5T9S5 1454 aa23.3■■□□□ 1.32
RNF4-213ENST00000509388 ASXL2Q76L83 1435 aa23.29■■□□□ 1.32
RNF4-213ENST00000509388 CDK13Q14004 1512 aaKnown RBP23.28■■□□□ 1.32
RNF4-213ENST00000509388 TRHP20396 242 aaPredicted RBP23.27■■□□□ 1.32
RNF4-213ENST00000509388 KCNH8Q96L42 1107 aa23.27■■□□□ 1.32
RNF4-213ENST00000509388 MAPKBP1O60336 1514 aa23.27■■□□□ 1.32
RNF4-213ENST00000509388 WDR7Q9Y4E6 1490 aa23.23■■□□□ 1.31
RNF4-213ENST00000509388 FAM69CQ0P6D2 419 aa23.2■■□□□ 1.3
RNF4-213ENST00000509388 MTUS2Q5JR59 1369 aa23.17■■□□□ 1.3
RNF4-213ENST00000509388 ABCC10Q5T3U5 1492 aa23.15■■□□□ 1.3
RNF4-213ENST00000509388 TROQ12816 1431 aaPredicted RBP23.15■■□□□ 1.3
RNF4-213ENST00000509388 LRRIQ1Q96JM4 1722 aa23.13■■□□□ 1.29
RNF4-213ENST00000509388 MAP3K1Q13233 1512 aa23.12■■□□□ 1.29
RNF4-213ENST00000509388 TIAM1Q13009 1591 aa23.11■■□□□ 1.29
RNF4-213ENST00000509388 KANK4Q5T7N3 995 aaPredicted RBP23.08■■□□□ 1.29
RNF4-213ENST00000509388 DIP2BQ9P265 1576 aa23.06■■□□□ 1.28
RNF4-213ENST00000509388 LRRC9Q6ZRR7 1453 aa23.05■■□□□ 1.28
RNF4-213ENST00000509388 MAGI3Q5TCQ9 1506 aa23.05■■□□□ 1.28
RNF4-213ENST00000509388 CFAP43Q8NDM7 1665 aa23.05■■□□□ 1.28
RNF4-213ENST00000509388 EHBP1L1Q8N3D4 1523 aa23.04■■□□□ 1.28
RNF4-213ENST00000509388 GLI2P10070 1586 aa23.03■■□□□ 1.28
RNF4-213ENST00000509388 KIF14Q15058 1648 aa23.02■■□□□ 1.28
RNF4-213ENST00000509388 CD109Q6YHK3 1445 aa23.01■■□□□ 1.27
RNF4-213ENST00000509388 PPARGC1BQ86YN6 1023 aaKnown RBP22.99■■□□□ 1.27
RNF4-213ENST00000509388 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.98■■□□□ 1.27
RNF4-213ENST00000509388 CCNB3Q8WWL7 1395 aa22.97■■□□□ 1.27
RNF4-213ENST00000509388 ABCA9Q8IUA7 1624 aa22.95■■□□□ 1.26
RNF4-213ENST00000509388 KIF13AQ9H1H9 1805 aa22.94■■□□□ 1.26
RNF4-213ENST00000509388 NCOA2Q15596 1464 aa22.93■■□□□ 1.26
RNF4-213ENST00000509388 SUPT6HQ7KZ85 1726 aaKnown RBP22.91■■□□□ 1.26
RNF4-213ENST00000509388 EFCAB2Q5VUJ9 269 aa22.91■■□□□ 1.26
RNF4-213ENST00000509388 TTC37Q6PGP7 1564 aa22.91■■□□□ 1.26
RNF4-213ENST00000509388 PLCH2O75038 1416 aa22.91■■□□□ 1.26
RNF4-213ENST00000509388 MAP3K4Q9Y6R4 1608 aa22.9■■□□□ 1.26
RNF4-213ENST00000509388 CFDP1Q9UEE9 299 aaPredicted RBP22.9■■□□□ 1.26
RNF4-213ENST00000509388 TEX14Q8IWB6 1497 aa22.9■■□□□ 1.26
RNF4-213ENST00000509388 ZNF777Q9ULD5 760 aaPredicted RBP22.88■■□□□ 1.25
RNF4-213ENST00000509388 GPATCH8Q9UKJ3 1502 aaKnown RBP22.87■■□□□ 1.25
RNF4-213ENST00000509388 ARHGAP5Q13017 1502 aa22.85■■□□□ 1.25
RNF4-213ENST00000509388 TSPOAP1O95153 1857 aa22.85■■□□□ 1.25
RNF4-213ENST00000509388 FANCAO15360 1455 aa22.83■■□□□ 1.25
RNF4-213ENST00000509388 MYO5CQ9NQX4 1742 aa22.82■■□□□ 1.24
RNF4-213ENST00000509388 PHLDB1Q86UU1 1377 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms