RNA–Protein interactions for RNA: ENST00000509093.5

COPS4-206, Transcript of COP9 signalosome subunit 4, humanhuman

TSL 2 BASIC

Gene COPS4, Length 2,273 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4-206ENST00000509093 NEUROD1Q13562 356 aa17.08■□□□□ 0.32
COPS4-206ENST00000509093 GRIN2BQ13224 1484 aa17.06■□□□□ 0.32
COPS4-206ENST00000509093 ARAP1Q96P48 1450 aa17.04■□□□□ 0.32
COPS4-206ENST00000509093 EIF4G3O43432 1585 aaKnown RBP17.04■□□□□ 0.32
COPS4-206ENST00000509093 ARHGAP35Q9NRY4 1499 aa17.03■□□□□ 0.32
COPS4-206ENST00000509093 VPS8Q8N3P4 1428 aa17.02■□□□□ 0.32
COPS4-206ENST00000509093 FHAD1B1AJZ9 1412 aa17.01■□□□□ 0.31
COPS4-206ENST00000509093 ADAMTS12P58397 1594 aa17■□□□□ 0.31
COPS4-206ENST00000509093 TTBK1Q5TCY1 1321 aaPredicted RBP17■□□□□ 0.31
COPS4-206ENST00000509093 CENPBP07199 599 aaPredicted RBP17■□□□□ 0.31
COPS4-206ENST00000509093 GTF3C3Q9Y5Q9 886 aa16.99■□□□□ 0.31
COPS4-206ENST00000509093 SNAPC4Q5SXM2 1469 aa16.98■□□□□ 0.31
COPS4-206ENST00000509093 P3H3Q8IVL6 736 aa16.96■□□□□ 0.31
COPS4-206ENST00000509093 CTTNBP2Q8WZ74 1663 aa16.94■□□□□ 0.3
COPS4-206ENST00000509093 MAGI1Q96QZ7 1491 aaPredicted RBP16.88■□□□□ 0.29
COPS4-206ENST00000509093 FHOD3Q2V2M9 1422 aa16.88■□□□□ 0.29
COPS4-206ENST00000509093 FBLN2P98095 1184 aa16.86■□□□□ 0.29
COPS4-206ENST00000509093 GRIN2AQ12879 1464 aa16.86■□□□□ 0.29
COPS4-206ENST00000509093 CHMP7Q8WUX9 453 aaPredicted RBP16.85■□□□□ 0.29
COPS4-206ENST00000509093 DIEXFQ68CQ4 756 aaKnown RBP16.85■□□□□ 0.29
COPS4-206ENST00000509093 SYNJ2O15056 1496 aa16.84■□□□□ 0.29
COPS4-206ENST00000509093 APLP2Q06481 763 aa16.84■□□□□ 0.29
COPS4-206ENST00000509093 EFCAB5A4FU69 1503 aa16.83■□□□□ 0.28
COPS4-206ENST00000509093 IQGAP2Q13576 1575 aa16.81■□□□□ 0.28
COPS4-206ENST00000509093 KANK4Q5T7N3 995 aaPredicted RBP16.81■□□□□ 0.28
COPS4-206ENST00000509093 SAMD9Q5K651 1589 aa16.8■□□□□ 0.28
COPS4-206ENST00000509093 CEP170Q5SW79 1584 aa16.79■□□□□ 0.28
COPS4-206ENST00000509093 CCER1Q8TC90 406 aaPredicted RBP16.79■□□□□ 0.28
COPS4-206ENST00000509093 KIAA0586Q9BVV6 1533 aa16.78■□□□□ 0.28
COPS4-206ENST00000509093 PCF11O94913 1555 aaKnown RBP16.76■□□□□ 0.27
COPS4-206ENST00000509093 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.76■□□□□ 0.27
COPS4-206ENST00000509093 ATP1B4Q9UN42 357 aaPredicted RBP16.75■□□□□ 0.27
COPS4-206ENST00000509093 NUP160Q12769 1436 aa16.73■□□□□ 0.27
COPS4-206ENST00000509093 UGGT2Q9NYU1 1516 aa16.73■□□□□ 0.27
COPS4-206ENST00000509093 FMN1Q68DA7 1419 aa16.7■□□□□ 0.26
COPS4-206ENST00000509093 CASKIN1Q8WXD9 1431 aa16.7■□□□□ 0.26
COPS4-206ENST00000509093 DISP1Q96F81 1524 aa16.69■□□□□ 0.26
COPS4-206ENST00000509093 TIAM1Q13009 1591 aa16.69■□□□□ 0.26
COPS4-206ENST00000509093 FYCO1Q9BQS8 1478 aa16.68■□□□□ 0.26
COPS4-206ENST00000509093 CHD1O14646 1710 aa16.66■□□□□ 0.26
COPS4-206ENST00000509093 JPH4Q96JJ6 628 aa16.66■□□□□ 0.26
COPS4-206ENST00000509093 MAP3K1Q13233 1512 aa16.65■□□□□ 0.26
COPS4-206ENST00000509093 KIAA0556O60303 1618 aa16.65■□□□□ 0.26
COPS4-206ENST00000509093 LRRC9Q6ZRR7 1453 aa16.63■□□□□ 0.25
COPS4-206ENST00000509093 CFAP43Q8NDM7 1665 aa16.62■□□□□ 0.25
COPS4-206ENST00000509093 LRRIQ1Q96JM4 1722 aa16.61■□□□□ 0.25
COPS4-206ENST00000509093 ARID3CA6NKF2 412 aa16.58■□□□□ 0.25
COPS4-206ENST00000509093 ZNF316A6NFI3 1004 aaPredicted RBP16.56■□□□□ 0.24
COPS4-206ENST00000509093 HNRNPUL2Q1KMD3 747 aaKnown RBP16.56■□□□□ 0.24
COPS4-206ENST00000509093 CARMIL2Q6F5E8 1435 aa16.54■□□□□ 0.24
COPS4-206ENST00000509093 PRG4Q92954 1404 aaPredicted RBP16.54■□□□□ 0.24
COPS4-206ENST00000509093 PHLDB1Q86UU1 1377 aa16.54■□□□□ 0.24
COPS4-206ENST00000509093 HECW1Q76N89 1606 aa16.53■□□□□ 0.24
COPS4-206ENST00000509093 CDK13Q14004 1512 aaKnown RBP16.52■□□□□ 0.24
COPS4-206ENST00000509093 EPRSP07814 1512 aaKnown RBP16.52■□□□□ 0.23
COPS4-206ENST00000509093 RRBP1Q9P2E9 1410 aaKnown RBP16.51■□□□□ 0.23
COPS4-206ENST00000509093 PLB1Q6P1J6 1458 aa16.51■□□□□ 0.23
COPS4-206ENST00000509093 MAGI3Q5TCQ9 1506 aa16.51■□□□□ 0.23
COPS4-206ENST00000509093 MTUS2Q5JR59 1369 aa16.5■□□□□ 0.23
COPS4-206ENST00000509093 NUP153P49790 1475 aaKnown RBP16.5■□□□□ 0.23
COPS4-206ENST00000509093 RAPGEF6Q8TEU7 1601 aa16.49■□□□□ 0.23
COPS4-206ENST00000509093 CCDC18Q5T9S5 1454 aa16.48■□□□□ 0.23
COPS4-206ENST00000509093 CCNB3Q8WWL7 1395 aa16.47■□□□□ 0.23
COPS4-206ENST00000509093 ERCC6L2Q5T890 1561 aa16.47■□□□□ 0.23
COPS4-206ENST00000509093 SHROOM2Q13796 1616 aa16.47■□□□□ 0.23
COPS4-206ENST00000509093 YTHDC1Q96MU7 727 aaKnown RBP16.47■□□□□ 0.23
COPS4-206ENST00000509093 CLASP1Q7Z460 1538 aa16.47■□□□□ 0.23
COPS4-206ENST00000509093 PTPRGP23470 1445 aa16.43■□□□□ 0.22
COPS4-206ENST00000509093 EHBP1L1Q8N3D4 1523 aa16.42■□□□□ 0.22
COPS4-206ENST00000509093 NCOA2Q15596 1464 aa16.42■□□□□ 0.22
COPS4-206ENST00000509093 ITGAEP38570 1179 aa16.42■□□□□ 0.22
COPS4-206ENST00000509093 ABCA8O94911 1581 aa16.41■□□□□ 0.22
COPS4-206ENST00000509093 FAM50AQ14320 339 aaKnown RBP16.4■□□□□ 0.22
COPS4-206ENST00000509093 CLSPNQ9HAW4 1339 aa16.38■□□□□ 0.21
COPS4-206ENST00000509093 MIER1Q8N108 512 aa16.38■□□□□ 0.21
COPS4-206ENST00000509093 SUPT6HQ7KZ85 1726 aaKnown RBP16.37■□□□□ 0.21
COPS4-206ENST00000509093 ARHGEF11O15085 1522 aa16.37■□□□□ 0.21
COPS4-206ENST00000509093 FGD6Q6ZV73 1430 aa16.36■□□□□ 0.21
COPS4-206ENST00000509093 ATP10BO94823 1461 aa16.35■□□□□ 0.21
COPS4-206ENST00000509093 MYOM3Q5VTT5 1437 aa16.35■□□□□ 0.21
COPS4-206ENST00000509093 OSCARQ8IYS5 282 aa16.33■□□□□ 0.2
COPS4-206ENST00000509093 UACAQ9BZF9 1416 aa16.32■□□□□ 0.2
COPS4-206ENST00000509093 CDK11AQ9UQ88 783 aaPredicted RBP16.32■□□□□ 0.2
COPS4-206ENST00000509093 TROQ12816 1431 aaPredicted RBP16.31■□□□□ 0.2
COPS4-206ENST00000509093 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.27■□□□□ 0.2
COPS4-206ENST00000509093 KIF14Q15058 1648 aa16.27■□□□□ 0.19
COPS4-206ENST00000509093 PLEKHD1A6NEE1 506 aa16.26■□□□□ 0.19
COPS4-206ENST00000509093 PTPN23Q9H3S7 1636 aa16.26■□□□□ 0.19
COPS4-206ENST00000509093 PTPRKQ15262 1439 aa16.25■□□□□ 0.19
COPS4-206ENST00000509093 ABCC2Q92887 1545 aa16.25■□□□□ 0.19
COPS4-206ENST00000509093 ANP32EQ9BTT0 268 aa16.24■□□□□ 0.19
COPS4-206ENST00000509093 TCOF1Q13428 1488 aaKnown RBP16.22■□□□□ 0.19
COPS4-206ENST00000509093 ZNF644Q9H582 1327 aaPredicted RBP16.22■□□□□ 0.19
COPS4-206ENST00000509093 SUPT16HQ9Y5B9 1047 aaKnown RBP16.21■□□□□ 0.19
COPS4-206ENST00000509093 MIA2Q96PC5 1412 aa16.21■□□□□ 0.19
COPS4-206ENST00000509093 ADCY10Q96PN6 1610 aa16.21■□□□□ 0.19
COPS4-206ENST00000509093 RAB3GAP2Q9H2M9 1393 aa16.2■□□□□ 0.18
COPS4-206ENST00000509093 GPATCH8Q9UKJ3 1502 aaKnown RBP16.19■□□□□ 0.18
COPS4-206ENST00000509093 BCL11AQ9H165 835 aa16.19■□□□□ 0.18
COPS4-206ENST00000509093 UHRF1BP1LA0JNW5 1464 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms