RNA–Protein interactions for RNA: ENST00000507597.5

USP53-203, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 3

Gene USP53, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-203ENST00000507597 CLASP1Q7Z460 1538 aa32.7■■■□□ 2.83
USP53-203ENST00000507597 UBTFP17480 764 aaKnown RBP32.69■■■□□ 2.82
USP53-203ENST00000507597 JPH4Q96JJ6 628 aa32.64■■■□□ 2.82
USP53-203ENST00000507597 EHMT2Q96KQ7 1210 aa32.6■■■□□ 2.81
USP53-203ENST00000507597 IQGAP2Q13576 1575 aa32.59■■■□□ 2.81
USP53-203ENST00000507597 CTTNBP2Q8WZ74 1663 aa32.56■■■□□ 2.8
USP53-203ENST00000507597 CARMIL2Q6F5E8 1435 aa32.48■■■□□ 2.79
USP53-203ENST00000507597 SHROOM2Q13796 1616 aa32.48■■■□□ 2.79
USP53-203ENST00000507597 PRG4Q92954 1404 aaPredicted RBP32.46■■■□□ 2.79
USP53-203ENST00000507597 TNIKQ9UKE5 1360 aa32.43■■■□□ 2.78
USP53-203ENST00000507597 UGGT2Q9NYU1 1516 aa32.42■■■□□ 2.78
USP53-203ENST00000507597 ARHGEF11O15085 1522 aa32.4■■■□□ 2.78
USP53-203ENST00000507597 LOC105371045A0A1W2PR82 267 aa32.35■■■□□ 2.77
USP53-203ENST00000507597 RANGAP1P46060 587 aaPredicted RBP32.32■■■□□ 2.76
USP53-203ENST00000507597 RIMBP3CA6NJZ7 1639 aa32.3■■■□□ 2.76
USP53-203ENST00000507597 RIMBP3BA6NNM3 1639 aa32.3■■■□□ 2.76
USP53-203ENST00000507597 RIMBP3Q9UFD9 1639 aa32.3■■■□□ 2.76
USP53-203ENST00000507597 DISP1Q96F81 1524 aa32.26■■■□□ 2.75
USP53-203ENST00000507597 EFCAB5A4FU69 1503 aa32.25■■■□□ 2.75
USP53-203ENST00000507597 KIAA0556O60303 1618 aa32.22■■■□□ 2.75
USP53-203ENST00000507597 ERCC6L2Q5T890 1561 aa32.2■■■□□ 2.75
USP53-203ENST00000507597 PTPRGP23470 1445 aa32.2■■■□□ 2.75
USP53-203ENST00000507597 CYB5RLQ6IPT4 315 aa32.18■■■□□ 2.74
USP53-203ENST00000507597 P3H3Q8IVL6 736 aa32.18■■■□□ 2.74
USP53-203ENST00000507597 SAMD9Q5K651 1589 aa32.17■■■□□ 2.74
USP53-203ENST00000507597 CLIP1P30622 1438 aa32.15■■■□□ 2.74
USP53-203ENST00000507597 ARAP1Q96P48 1450 aa32.14■■■□□ 2.74
USP53-203ENST00000507597 TTBK1Q5TCY1 1321 aaPredicted RBP32.13■■■□□ 2.73
USP53-203ENST00000507597 CEP162Q5TB80 1403 aa32.09■■■□□ 2.73
USP53-203ENST00000507597 ARHGAP35Q9NRY4 1499 aa32.07■■■□□ 2.72
USP53-203ENST00000507597 FHOD3Q2V2M9 1422 aa32.04■■■□□ 2.72
USP53-203ENST00000507597 FMN1Q68DA7 1419 aa32.01■■■□□ 2.72
USP53-203ENST00000507597 UACAQ9BZF9 1416 aa31.99■■■□□ 2.71
USP53-203ENST00000507597 NPM1P06748 294 aaKnown RBP eCLIP31.97■■■□□ 2.71
USP53-203ENST00000507597 UHRF1BP1LA0JNW5 1464 aa31.91■■■□□ 2.7
USP53-203ENST00000507597 ABCC2Q92887 1545 aa31.86■■■□□ 2.69
USP53-203ENST00000507597 PLB1Q6P1J6 1458 aa31.85■■■□□ 2.69
USP53-203ENST00000507597 ABCA8O94911 1581 aa31.84■■■□□ 2.69
USP53-203ENST00000507597 RAPGEF6Q8TEU7 1601 aa31.8■■■□□ 2.68
USP53-203ENST00000507597 ATP1B4Q9UN42 357 aaPredicted RBP31.8■■■□□ 2.68
USP53-203ENST00000507597 ADCY10Q96PN6 1610 aa31.78■■■□□ 2.68
USP53-203ENST00000507597 CASKIN1Q8WXD9 1431 aa31.74■■■□□ 2.67
USP53-203ENST00000507597 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.72■■■□□ 2.67
USP53-203ENST00000507597 HNRNPUL2Q1KMD3 747 aaKnown RBP31.72■■■□□ 2.67
USP53-203ENST00000507597 KDM5BQ9UGL1 1544 aa31.71■■■□□ 2.67
USP53-203ENST00000507597 VPS8Q8N3P4 1428 aa31.71■■■□□ 2.67
USP53-203ENST00000507597 HECW1Q76N89 1606 aa31.7■■■□□ 2.66
USP53-203ENST00000507597 FYCO1Q9BQS8 1478 aa31.69■■■□□ 2.66
USP53-203ENST00000507597 CDK11AQ9UQ88 783 aaPredicted RBP31.66■■■□□ 2.66
USP53-203ENST00000507597 NUP153P49790 1475 aaKnown RBP31.65■■■□□ 2.66
USP53-203ENST00000507597 ATP10BO94823 1461 aa31.62■■■□□ 2.65
USP53-203ENST00000507597 CCDC18Q5T9S5 1454 aa31.61■■■□□ 2.65
USP53-203ENST00000507597 ARID3CA6NKF2 412 aa31.61■■■□□ 2.65
USP53-203ENST00000507597 PCF11O94913 1555 aaKnown RBP31.6■■■□□ 2.65
USP53-203ENST00000507597 APLP2Q06481 763 aa31.6■■■□□ 2.65
USP53-203ENST00000507597 PLEKHD1A6NEE1 506 aa31.59■■■□□ 2.65
USP53-203ENST00000507597 ZCCHC11Q5TAX3 1644 aaKnown RBP31.59■■■□□ 2.65
USP53-203ENST00000507597 MAPKBP1O60336 1514 aa31.58■■■□□ 2.65
USP53-203ENST00000507597 EPRSP07814 1512 aaKnown RBP31.58■■■□□ 2.65
USP53-203ENST00000507597 ASXL2Q76L83 1435 aa31.52■■■□□ 2.64
USP53-203ENST00000507597 WDR7Q9Y4E6 1490 aa31.46■■■□□ 2.63
USP53-203ENST00000507597 CDK13Q14004 1512 aaKnown RBP31.46■■■□□ 2.63
USP53-203ENST00000507597 TRHP20396 242 aaPredicted RBP31.42■■■□□ 2.62
USP53-203ENST00000507597 KCNH8Q96L42 1107 aa31.4■■■□□ 2.62
USP53-203ENST00000507597 MAP3K1Q13233 1512 aa31.39■■■□□ 2.62
USP53-203ENST00000507597 ABCC10Q5T3U5 1492 aa31.38■■■□□ 2.61
USP53-203ENST00000507597 MTUS2Q5JR59 1369 aa31.36■■■□□ 2.61
USP53-203ENST00000507597 FAM69CQ0P6D2 419 aa31.36■■■□□ 2.61
USP53-203ENST00000507597 TROQ12816 1431 aaPredicted RBP31.35■■■□□ 2.61
USP53-203ENST00000507597 LRRIQ1Q96JM4 1722 aa31.32■■■□□ 2.61
USP53-203ENST00000507597 TIAM1Q13009 1591 aa31.31■■■□□ 2.6
USP53-203ENST00000507597 GLI2P10070 1586 aa31.27■■■□□ 2.6
USP53-203ENST00000507597 CFAP43Q8NDM7 1665 aa31.27■■■□□ 2.6
USP53-203ENST00000507597 DIP2BQ9P265 1576 aa31.26■■■□□ 2.59
USP53-203ENST00000507597 EHBP1L1Q8N3D4 1523 aa31.24■■■□□ 2.59
USP53-203ENST00000507597 KIF14Q15058 1648 aa31.22■■■□□ 2.59
USP53-203ENST00000507597 LRRC9Q6ZRR7 1453 aa31.21■■■□□ 2.59
USP53-203ENST00000507597 CD109Q6YHK3 1445 aa31.17■■■□□ 2.58
USP53-203ENST00000507597 MAGI3Q5TCQ9 1506 aa31.15■■■□□ 2.58
USP53-203ENST00000507597 KANK4Q5T7N3 995 aaPredicted RBP31.14■■■□□ 2.58
USP53-203ENST00000507597 ABCA9Q8IUA7 1624 aa31.13■■■□□ 2.57
USP53-203ENST00000507597 KIF13AQ9H1H9 1805 aa31.12■■■□□ 2.57
USP53-203ENST00000507597 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.11■■■□□ 2.57
USP53-203ENST00000507597 SUPT6HQ7KZ85 1726 aaKnown RBP31.09■■■□□ 2.57
USP53-203ENST00000507597 TEX14Q8IWB6 1497 aa31.08■■■□□ 2.57
USP53-203ENST00000507597 CCNB3Q8WWL7 1395 aa31.07■■■□□ 2.56
USP53-203ENST00000507597 MAP3K4Q9Y6R4 1608 aa31.07■■■□□ 2.56
USP53-203ENST00000507597 PLCH2O75038 1416 aa31.03■■■□□ 2.56
USP53-203ENST00000507597 NCOA2Q15596 1464 aa31.02■■■□□ 2.56
USP53-203ENST00000507597 EFCAB2Q5VUJ9 269 aa31.02■■■□□ 2.56
USP53-203ENST00000507597 PHLDB1Q86UU1 1377 aa31.01■■■□□ 2.55
USP53-203ENST00000507597 TTC37Q6PGP7 1564 aa31■■■□□ 2.55
USP53-203ENST00000507597 ARAP3Q8WWN8 1544 aa30.98■■■□□ 2.55
USP53-203ENST00000507597 CFDP1Q9UEE9 299 aaPredicted RBP30.97■■■□□ 2.55
USP53-203ENST00000507597 MYO5CQ9NQX4 1742 aa30.96■■■□□ 2.55
USP53-203ENST00000507597 TSPOAP1O95153 1857 aa30.94■■■□□ 2.54
USP53-203ENST00000507597 GPATCH8Q9UKJ3 1502 aaKnown RBP30.93■■■□□ 2.54
USP53-203ENST00000507597 NEO1Q92859 1461 aa30.93■■■□□ 2.54
USP53-203ENST00000507597 ARHGAP5Q13017 1502 aa30.93■■■□□ 2.54
USP53-203ENST00000507597 CFAP74Q9C0B2 1584 aa30.92■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms