RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 IQGAP2Q13576 1575 aa11.72□□□□□ -0.53
NUP54-204ENST00000506098 PHF23Q9BUL5 403 aaPredicted RBP11.72□□□□□ -0.53
NUP54-204ENST00000506098 SHROOM2Q13796 1616 aa11.71□□□□□ -0.54
NUP54-204ENST00000506098 CLASP1Q7Z460 1538 aa11.7□□□□□ -0.54
NUP54-204ENST00000506098 KIAA0586Q9BVV6 1533 aa11.7□□□□□ -0.54
NUP54-204ENST00000506098 UBTFP17480 764 aaKnown RBP11.69□□□□□ -0.54
NUP54-204ENST00000506098 FBLN2P98095 1184 aa11.69□□□□□ -0.54
NUP54-204ENST00000506098 SAMD9Q5K651 1589 aa11.67□□□□□ -0.54
NUP54-204ENST00000506098 UGGT2Q9NYU1 1516 aa11.66□□□□□ -0.54
NUP54-204ENST00000506098 EHMT2Q96KQ7 1210 aa11.66□□□□□ -0.54
NUP54-204ENST00000506098 EFCAB5A4FU69 1503 aa11.64□□□□□ -0.55
NUP54-204ENST00000506098 CEP162Q5TB80 1403 aa11.62□□□□□ -0.55
NUP54-204ENST00000506098 OSCARQ8IYS5 282 aa11.62□□□□□ -0.55
NUP54-204ENST00000506098 KIAA0556O60303 1618 aa11.61□□□□□ -0.55
NUP54-204ENST00000506098 DISP1Q96F81 1524 aa11.6□□□□□ -0.55
NUP54-204ENST00000506098 ARHGAP35Q9NRY4 1499 aa11.59□□□□□ -0.55
NUP54-204ENST00000506098 CLIP1P30622 1438 aa11.59□□□□□ -0.55
NUP54-204ENST00000506098 JPH4Q96JJ6 628 aa11.58□□□□□ -0.56
NUP54-204ENST00000506098 ARAP1Q96P48 1450 aa11.55□□□□□ -0.56
NUP54-204ENST00000506098 ERCC6L2Q5T890 1561 aa11.54□□□□□ -0.56
NUP54-204ENST00000506098 CARMIL2Q6F5E8 1435 aa11.54□□□□□ -0.56
NUP54-204ENST00000506098 PRG4Q92954 1404 aaPredicted RBP11.54□□□□□ -0.56
NUP54-204ENST00000506098 LRRIQ1Q96JM4 1722 aa11.52□□□□□ -0.56
NUP54-204ENST00000506098 RIMBP3CA6NJZ7 1639 aa11.5□□□□□ -0.57
NUP54-204ENST00000506098 RIMBP3BA6NNM3 1639 aa11.5□□□□□ -0.57
NUP54-204ENST00000506098 RIMBP3Q9UFD9 1639 aa11.5□□□□□ -0.57
NUP54-204ENST00000506098 FHOD3Q2V2M9 1422 aa11.5□□□□□ -0.57
NUP54-204ENST00000506098 RANGAP1P46060 587 aaPredicted RBP11.49□□□□□ -0.57
NUP54-204ENST00000506098 FMN1Q68DA7 1419 aa11.48□□□□□ -0.57
NUP54-204ENST00000506098 ARHGEF11O15085 1522 aa11.48□□□□□ -0.57
NUP54-204ENST00000506098 RAPGEF6Q8TEU7 1601 aa11.48□□□□□ -0.57
NUP54-204ENST00000506098 VPS8Q8N3P4 1428 aa11.47□□□□□ -0.57
NUP54-204ENST00000506098 SENP3Q9H4L4 574 aaPredicted RBP11.47□□□□□ -0.57
NUP54-204ENST00000506098 ABCA8O94911 1581 aa11.46□□□□□ -0.57
NUP54-204ENST00000506098 PCF11O94913 1555 aaKnown RBP11.46□□□□□ -0.57
NUP54-204ENST00000506098 P3H3Q8IVL6 736 aa11.46□□□□□ -0.57
NUP54-204ENST00000506098 HECW1Q76N89 1606 aa11.45□□□□□ -0.58
NUP54-204ENST00000506098 CFAP43Q8NDM7 1665 aa11.44□□□□□ -0.58
NUP54-204ENST00000506098 FYCO1Q9BQS8 1478 aa11.44□□□□□ -0.58
NUP54-204ENST00000506098 PTPRGP23470 1445 aa11.43□□□□□ -0.58
NUP54-204ENST00000506098 CASKIN1Q8WXD9 1431 aa11.43□□□□□ -0.58
NUP54-204ENST00000506098 ADCY10Q96PN6 1610 aa11.41□□□□□ -0.58
NUP54-204ENST00000506098 MAP3K1Q13233 1512 aa11.4□□□□□ -0.58
NUP54-204ENST00000506098 UHRF1BP1LA0JNW5 1464 aa11.4□□□□□ -0.58
NUP54-204ENST00000506098 PLB1Q6P1J6 1458 aa11.4□□□□□ -0.58
NUP54-204ENST00000506098 ABCC2Q92887 1545 aa11.4□□□□□ -0.59
NUP54-204ENST00000506098 UACAQ9BZF9 1416 aa11.39□□□□□ -0.59
NUP54-204ENST00000506098 ZCCHC11Q5TAX3 1644 aaKnown RBP11.38□□□□□ -0.59
NUP54-204ENST00000506098 NUP153P49790 1475 aaKnown RBP11.38□□□□□ -0.59
NUP54-204ENST00000506098 TIAM1Q13009 1591 aa11.37□□□□□ -0.59
NUP54-204ENST00000506098 CCDC18Q5T9S5 1454 aa11.37□□□□□ -0.59
NUP54-204ENST00000506098 EPRSP07814 1512 aaKnown RBP11.36□□□□□ -0.59
NUP54-204ENST00000506098 KDM5BQ9UGL1 1544 aa11.35□□□□□ -0.59
NUP54-204ENST00000506098 DNAJC5Q9H3Z4 198 aa11.33□□□□□ -0.6
NUP54-204ENST00000506098 CDK13Q14004 1512 aaKnown RBP11.33□□□□□ -0.6
NUP54-204ENST00000506098 TTBK1Q5TCY1 1321 aaPredicted RBP11.33□□□□□ -0.6
NUP54-204ENST00000506098 ATP10BO94823 1461 aa11.32□□□□□ -0.6
NUP54-204ENST00000506098 SUPT6HQ7KZ85 1726 aaKnown RBP11.3□□□□□ -0.6
NUP54-204ENST00000506098 MAGI3Q5TCQ9 1506 aa11.29□□□□□ -0.6
NUP54-204ENST00000506098 LRRC9Q6ZRR7 1453 aa11.28□□□□□ -0.6
NUP54-204ENST00000506098 ATP1B4Q9UN42 357 aaPredicted RBP11.28□□□□□ -0.6
NUP54-204ENST00000506098 EHBP1L1Q8N3D4 1523 aa11.28□□□□□ -0.6
NUP54-204ENST00000506098 APLP2Q06481 763 aa11.27□□□□□ -0.61
NUP54-204ENST00000506098 CYB5RLQ6IPT4 315 aa11.27□□□□□ -0.61
NUP54-204ENST00000506098 MAPKBP1O60336 1514 aa11.26□□□□□ -0.61
NUP54-204ENST00000506098 CDC42BPAQ5VT25 1732 aa11.26□□□□□ -0.61
NUP54-204ENST00000506098 KIF13AQ9H1H9 1805 aa11.25□□□□□ -0.61
NUP54-204ENST00000506098 CDK11AQ9UQ88 783 aaPredicted RBP11.24□□□□□ -0.61
NUP54-204ENST00000506098 TROQ12816 1431 aaPredicted RBP11.24□□□□□ -0.61
NUP54-204ENST00000506098 KIF14Q15058 1648 aa11.24□□□□□ -0.61
NUP54-204ENST00000506098 MYO5CQ9NQX4 1742 aa11.23□□□□□ -0.61
NUP54-204ENST00000506098 KANK4Q5T7N3 995 aaPredicted RBP11.23□□□□□ -0.61
NUP54-204ENST00000506098 ITSN2Q9NZM3 1697 aa11.23□□□□□ -0.61
NUP54-204ENST00000506098 CDC42BPBQ9Y5S2 1711 aa11.23□□□□□ -0.61
NUP54-204ENST00000506098 MTUS2Q5JR59 1369 aa11.22□□□□□ -0.61
NUP54-204ENST00000506098 ABCA9Q8IUA7 1624 aa11.21□□□□□ -0.61
NUP54-204ENST00000506098 WDR7Q9Y4E6 1490 aa11.21□□□□□ -0.61
NUP54-204ENST00000506098 PLEKHD1A6NEE1 506 aa11.21□□□□□ -0.61
NUP54-204ENST00000506098 NPM1P06748 294 aaKnown RBP eCLIP11.21□□□□□ -0.61
NUP54-204ENST00000506098 ASXL2Q76L83 1435 aa11.2□□□□□ -0.62
NUP54-204ENST00000506098 ARID3CA6NKF2 412 aa11.2□□□□□ -0.62
NUP54-204ENST00000506098 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.2□□□□□ -0.62
NUP54-204ENST00000506098 HNRNPUL2Q1KMD3 747 aaKnown RBP11.2□□□□□ -0.62
NUP54-204ENST00000506098 PREX2Q70Z35 1606 aa11.19□□□□□ -0.62
NUP54-204ENST00000506098 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.19□□□□□ -0.628e-6■□□□□ 10.5
NUP54-204ENST00000506098 NCOA2Q15596 1464 aa11.19□□□□□ -0.62
NUP54-204ENST00000506098 ABCC10Q5T3U5 1492 aa11.19□□□□□ -0.62
NUP54-204ENST00000506098 GLI2P10070 1586 aa11.18□□□□□ -0.62
NUP54-204ENST00000506098 TTC37Q6PGP7 1564 aa11.18□□□□□ -0.62
NUP54-204ENST00000506098 MAP3K4Q9Y6R4 1608 aa11.17□□□□□ -0.62
NUP54-204ENST00000506098 DIP2BQ9P265 1576 aa11.17□□□□□ -0.62
NUP54-204ENST00000506098 TSPOAP1O95153 1857 aa11.16□□□□□ -0.62
NUP54-204ENST00000506098 PPARGC1BQ86YN6 1023 aaKnown RBP11.14□□□□□ -0.63
NUP54-204ENST00000506098 ARAP3Q8WWN8 1544 aa11.14□□□□□ -0.63
NUP54-204ENST00000506098 PPRC1Q5VV67 1664 aaKnown RBP11.14□□□□□ -0.63
NUP54-204ENST00000506098 PHLDB1Q86UU1 1377 aa11.13□□□□□ -0.63
NUP54-204ENST00000506098 PTPN23Q9H3S7 1636 aa11.13□□□□□ -0.63
NUP54-204ENST00000506098 MYOM3Q5VTT5 1437 aa11.12□□□□□ -0.63
NUP54-204ENST00000506098 GPATCH8Q9UKJ3 1502 aaKnown RBP11.12□□□□□ -0.63
NUP54-204ENST00000506098 CFAP74Q9C0B2 1584 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms