RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 DNAJC5Q9H3Z4 198 aa19.9■□□□□ 0.78
PDLIM5-208ENST00000504489 CLASP1Q7Z460 1538 aa19.86■□□□□ 0.77
PDLIM5-208ENST00000504489 CEP170Q5SW79 1584 aa19.86■□□□□ 0.77
PDLIM5-208ENST00000504489 NUP160Q12769 1436 aa19.85■□□□□ 0.77
PDLIM5-208ENST00000504489 CSRNP3Q8WYN3 585 aa19.83■□□□□ 0.77
PDLIM5-208ENST00000504489 RAPGEF2Q9Y4G8 1499 aa19.83■□□□□ 0.76
PDLIM5-208ENST00000504489 PRXQ9BXM0 1461 aa19.82■□□□□ 0.76
PDLIM5-208ENST00000504489 SCAF1Q9H7N4 1312 aaKnown RBP19.81■□□□□ 0.76
PDLIM5-208ENST00000504489 CTTNBP2Q8WZ74 1663 aa19.76■□□□□ 0.75
PDLIM5-208ENST00000504489 FAM9AQ8IZU1 332 aaPredicted RBP19.76■□□□□ 0.75
PDLIM5-208ENST00000504489 KIF21BO75037 1637 aa19.75■□□□□ 0.75
PDLIM5-208ENST00000504489 SHROOM2Q13796 1616 aa19.74■□□□□ 0.75
PDLIM5-208ENST00000504489 KIAA0586Q9BVV6 1533 aa19.72■□□□□ 0.75
PDLIM5-208ENST00000504489 RIMBP3CA6NJZ7 1639 aa19.7■□□□□ 0.74
PDLIM5-208ENST00000504489 RIMBP3BA6NNM3 1639 aa19.7■□□□□ 0.74
PDLIM5-208ENST00000504489 RIMBP3Q9UFD9 1639 aa19.7■□□□□ 0.74
PDLIM5-208ENST00000504489 MAPK8IP2Q13387 824 aaPredicted RBP19.69■□□□□ 0.74
PDLIM5-208ENST00000504489 ARHGEF11O15085 1522 aa19.68■□□□□ 0.74
PDLIM5-208ENST00000504489 IQGAP2Q13576 1575 aa19.67■□□□□ 0.74
PDLIM5-208ENST00000504489 JPH4Q96JJ6 628 aa19.63■□□□□ 0.73
PDLIM5-208ENST00000504489 ERCC6L2Q5T890 1561 aa19.59■□□□□ 0.73
PDLIM5-208ENST00000504489 GOLGA3Q08378 1498 aa19.59■□□□□ 0.73
PDLIM5-208ENST00000504489 PRG4Q92954 1404 aaPredicted RBP19.58■□□□□ 0.72
PDLIM5-208ENST00000504489 UGGT2Q9NYU1 1516 aa19.57■□□□□ 0.72
PDLIM5-208ENST00000504489 PPP4R3CPQ6ZMV5 832 aa19.56■□□□□ 0.72
PDLIM5-208ENST00000504489 DMRT2Q9Y5R5 561 aa19.54■□□□□ 0.72
PDLIM5-208ENST00000504489 ARAP1Q96P48 1450 aa19.53■□□□□ 0.72
PDLIM5-208ENST00000504489 CARMIL2Q6F5E8 1435 aa19.5■□□□□ 0.71
PDLIM5-208ENST00000504489 DISP1Q96F81 1524 aa19.49■□□□□ 0.71
PDLIM5-208ENST00000504489 UBTFP17480 764 aaKnown RBP19.48■□□□□ 0.71
PDLIM5-208ENST00000504489 KIAA0556O60303 1618 aa19.47■□□□□ 0.71
PDLIM5-208ENST00000504489 EHMT2Q96KQ7 1210 aa19.45■□□□□ 0.7
PDLIM5-208ENST00000504489 SAMD9Q5K651 1589 aa19.44■□□□□ 0.7
PDLIM5-208ENST00000504489 CYB5RLQ6IPT4 315 aa19.44■□□□□ 0.7
PDLIM5-208ENST00000504489 TNIKQ9UKE5 1360 aa19.4■□□□□ 0.7
PDLIM5-208ENST00000504489 EFCAB5A4FU69 1503 aa19.38■□□□□ 0.69
PDLIM5-208ENST00000504489 PTPRGP23470 1445 aa19.37■□□□□ 0.69
PDLIM5-208ENST00000504489 RANGAP1P46060 587 aaPredicted RBP19.31■□□□□ 0.68
PDLIM5-208ENST00000504489 ADCY10Q96PN6 1610 aa19.31■□□□□ 0.68
PDLIM5-208ENST00000504489 LOC105371045A0A1W2PR82 267 aa19.29■□□□□ 0.68
PDLIM5-208ENST00000504489 P3H3Q8IVL6 736 aa19.29■□□□□ 0.68
PDLIM5-208ENST00000504489 ARHGAP35Q9NRY4 1499 aa19.28■□□□□ 0.68
PDLIM5-208ENST00000504489 TTBK1Q5TCY1 1321 aaPredicted RBP19.26■□□□□ 0.67
PDLIM5-208ENST00000504489 UHRF1BP1LA0JNW5 1464 aa19.26■□□□□ 0.67
PDLIM5-208ENST00000504489 ABCA8O94911 1581 aa19.26■□□□□ 0.67
PDLIM5-208ENST00000504489 FHOD3Q2V2M9 1422 aa19.25■□□□□ 0.67
PDLIM5-208ENST00000504489 UACAQ9BZF9 1416 aa19.25■□□□□ 0.67
PDLIM5-208ENST00000504489 ABCC2Q92887 1545 aa19.24■□□□□ 0.67
PDLIM5-208ENST00000504489 CLIP1P30622 1438 aa19.22■□□□□ 0.67
PDLIM5-208ENST00000504489 PLB1Q6P1J6 1458 aa19.22■□□□□ 0.67
PDLIM5-208ENST00000504489 RAPGEF6Q8TEU7 1601 aa19.22■□□□□ 0.67
PDLIM5-208ENST00000504489 CEP162Q5TB80 1403 aa19.18■□□□□ 0.66
PDLIM5-208ENST00000504489 ZCCHC11Q5TAX3 1644 aaKnown RBP19.17■□□□□ 0.66
PDLIM5-208ENST00000504489 FMN1Q68DA7 1419 aa19.17■□□□□ 0.66
PDLIM5-208ENST00000504489 KDM5BQ9UGL1 1544 aa19.16■□□□□ 0.66
PDLIM5-208ENST00000504489 NPM1P06748 294 aaKnown RBP eCLIP19.16■□□□□ 0.66
PDLIM5-208ENST00000504489 CNKSR2Q8WXI2 1034 aa19.14■□□□□ 0.65
PDLIM5-208ENST00000504489 MAPKBP1O60336 1514 aa19.14■□□□□ 0.65
PDLIM5-208ENST00000504489 LRRIQ1Q96JM4 1722 aa19.09■□□□□ 0.65
PDLIM5-208ENST00000504489 KIF13AQ9H1H9 1805 aa19.09■□□□□ 0.65
PDLIM5-208ENST00000504489 NUP153P49790 1475 aaKnown RBP19.09■□□□□ 0.65
PDLIM5-208ENST00000504489 HECW1Q76N89 1606 aa19.08■□□□□ 0.65
PDLIM5-208ENST00000504489 ATP10BO94823 1461 aa19.07■□□□□ 0.64
PDLIM5-208ENST00000504489 PCF11O94913 1555 aaKnown RBP19.06■□□□□ 0.64
PDLIM5-208ENST00000504489 CASKIN1Q8WXD9 1431 aa19.04■□□□□ 0.64
PDLIM5-208ENST00000504489 ASXL2Q76L83 1435 aa19.03■□□□□ 0.64
PDLIM5-208ENST00000504489 FYCO1Q9BQS8 1478 aa19.02■□□□□ 0.63
PDLIM5-208ENST00000504489 DIP2BQ9P265 1576 aa19■□□□□ 0.63
PDLIM5-208ENST00000504489 EPRSP07814 1512 aaKnown RBP19■□□□□ 0.63
PDLIM5-208ENST00000504489 ABCC10Q5T3U5 1492 aa18.99■□□□□ 0.63
PDLIM5-208ENST00000504489 ARID3CA6NKF2 412 aa18.98■□□□□ 0.63
PDLIM5-208ENST00000504489 WDR7Q9Y4E6 1490 aa18.97■□□□□ 0.63
PDLIM5-208ENST00000504489 CDK13Q14004 1512 aaKnown RBP18.97■□□□□ 0.63
PDLIM5-208ENST00000504489 NCBP3Q53F19 620 aaKnown RBP18.97■□□□□ 0.63
PDLIM5-208ENST00000504489 ATP1B4Q9UN42 357 aaPredicted RBP18.97■□□□□ 0.63
PDLIM5-208ENST00000504489 CCDC18Q5T9S5 1454 aa18.97■□□□□ 0.63
PDLIM5-208ENST00000504489 GLI2P10070 1586 aa18.95■□□□□ 0.62
PDLIM5-208ENST00000504489 VPS8Q8N3P4 1428 aa18.95■□□□□ 0.62
PDLIM5-208ENST00000504489 TRHP20396 242 aaPredicted RBP18.95■□□□□ 0.62
PDLIM5-208ENST00000504489 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.94■□□□□ 0.62
PDLIM5-208ENST00000504489 HNRNPUL2Q1KMD3 747 aaKnown RBP18.94■□□□□ 0.62
PDLIM5-208ENST00000504489 TSPOAP1O95153 1857 aa18.92■□□□□ 0.62
PDLIM5-208ENST00000504489 HOXD11P31277 338 aaPredicted RBP18.92■□□□□ 0.62
PDLIM5-208ENST00000504489 MAP3K4Q9Y6R4 1608 aa18.9■□□□□ 0.62
PDLIM5-208ENST00000504489 CFAP43Q8NDM7 1665 aa18.9■□□□□ 0.62
PDLIM5-208ENST00000504489 PLEKHD1A6NEE1 506 aa18.9■□□□□ 0.62
PDLIM5-208ENST00000504489 FAM69CQ0P6D2 419 aa18.9■□□□□ 0.62
PDLIM5-208ENST00000504489 RNF216Q9NWF9 866 aaPredicted RBP18.88■□□□□ 0.61
PDLIM5-208ENST00000504489 CDK11AQ9UQ88 783 aaPredicted RBP18.88■□□□□ 0.61
PDLIM5-208ENST00000504489 ABCA9Q8IUA7 1624 aa18.87■□□□□ 0.61
PDLIM5-208ENST00000504489 KCNH8Q96L42 1107 aa18.86■□□□□ 0.61
PDLIM5-208ENST00000504489 PPRC1Q5VV67 1664 aaKnown RBP18.85■□□□□ 0.61
PDLIM5-208ENST00000504489 TROQ12816 1431 aaPredicted RBP18.83■□□□□ 0.61
PDLIM5-208ENST00000504489 MAGI3Q5TCQ9 1506 aa18.83■□□□□ 0.6
PDLIM5-208ENST00000504489 TIAM1Q13009 1591 aa18.82■□□□□ 0.6
PDLIM5-208ENST00000504489 MAP3K1Q13233 1512 aa18.82■□□□□ 0.6
PDLIM5-208ENST00000504489 KIF14Q15058 1648 aa18.82■□□□□ 0.6
PDLIM5-208ENST00000504489 DCAF8L1A6NGE4 600 aa18.8■□□□□ 0.6
PDLIM5-208ENST00000504489 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.79■□□□□ 0.6
PDLIM5-208ENST00000504489 MYO5CQ9NQX4 1742 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms