RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 GRIN2AQ12879 1464 aa17.18■□□□□ 0.34
NUP54-203ENST00000504173 CHIC1Q5VXU3 224 aa17.14■□□□□ 0.33
NUP54-203ENST00000504173 TOP2BQ02880 1626 aa17.11■□□□□ 0.33
NUP54-203ENST00000504173 ABCA5Q8WWZ7 1642 aa17.1■□□□□ 0.33
NUP54-203ENST00000504173 BIVM-ERCC5R4GMW8 1640 aa17.1■□□□□ 0.33
NUP54-203ENST00000504173 ABCA10Q8WWZ4 1543 aa17.07■□□□□ 0.32
NUP54-203ENST00000504173 LMTK3Q96Q04 1460 aa17.07■□□□□ 0.32
NUP54-203ENST00000504173 NPM1P06748 294 aaKnown RBP eCLIP17.07■□□□□ 0.32
NUP54-203ENST00000504173 PRG4Q92954 1404 aaPredicted RBP17.04■□□□□ 0.32
NUP54-203ENST00000504173 ADAMTS12P58397 1594 aa17.04■□□□□ 0.32
NUP54-203ENST00000504173 ADCY10Q96PN6 1610 aa16.99■□□□□ 0.31
NUP54-203ENST00000504173 TSPOAP1O95153 1857 aa16.99■□□□□ 0.31
NUP54-203ENST00000504173 SOCS7O14512 581 aa16.97■□□□□ 0.31
NUP54-203ENST00000504173 FHAD1B1AJZ9 1412 aa16.96■□□□□ 0.31
NUP54-203ENST00000504173 JPH4Q96JJ6 628 aa16.95■□□□□ 0.3
NUP54-203ENST00000504173 PPRC1Q5VV67 1664 aaKnown RBP16.9■□□□□ 0.3
NUP54-203ENST00000504173 COL17A1Q9UMD9 1497 aaPredicted RBP16.87■□□□□ 0.29
NUP54-203ENST00000504173 GLI2P10070 1586 aa16.86■□□□□ 0.29
NUP54-203ENST00000504173 ILDR2Q71H61 639 aa16.85■□□□□ 0.29
NUP54-203ENST00000504173 ERICH3Q5RHP9 1530 aa16.84■□□□□ 0.29
NUP54-203ENST00000504173 RUSC2Q8N2Y8 1516 aa16.82■□□□□ 0.28
NUP54-203ENST00000504173 KIF27Q86VH2 1401 aa16.82■□□□□ 0.28
NUP54-203ENST00000504173 PLB1Q6P1J6 1458 aa16.78■□□□□ 0.28
NUP54-203ENST00000504173 DISP3Q9P2K9 1392 aa16.75■□□□□ 0.27
NUP54-203ENST00000504173 TEX14Q8IWB6 1497 aa16.74■□□□□ 0.27
NUP54-203ENST00000504173 ASXL2Q76L83 1435 aa16.74■□□□□ 0.27
NUP54-203ENST00000504173 ABCC2Q92887 1545 aa16.74■□□□□ 0.27
NUP54-203ENST00000504173 MAP3K4Q9Y6R4 1608 aa16.7■□□□□ 0.26
NUP54-203ENST00000504173 IGF1RP08069 1367 aa16.69■□□□□ 0.26
NUP54-203ENST00000504173 EEA1Q15075 1411 aa16.67■□□□□ 0.26
NUP54-203ENST00000504173 EPRSP07814 1512 aaKnown RBP16.66■□□□□ 0.26
NUP54-203ENST00000504173 KIAA0586Q9BVV6 1533 aa16.66■□□□□ 0.26
NUP54-203ENST00000504173 PTPRGP23470 1445 aa16.66■□□□□ 0.26
NUP54-203ENST00000504173 CUL7Q14999 1698 aa16.65■□□□□ 0.26
NUP54-203ENST00000504173 FAM9AQ8IZU1 332 aaPredicted RBP16.63■□□□□ 0.25
NUP54-203ENST00000504173 UHRF1BP1LA0JNW5 1464 aa16.62■□□□□ 0.25
NUP54-203ENST00000504173 PCF11O94913 1555 aaKnown RBP16.62■□□□□ 0.25
NUP54-203ENST00000504173 CARMIL1Q5VZK9 1371 aa16.62■□□□□ 0.25
NUP54-203ENST00000504173 PTPRMP28827 1452 aa16.61■□□□□ 0.25
NUP54-203ENST00000504173 CSRNP3Q8WYN3 585 aa16.6■□□□□ 0.25
NUP54-203ENST00000504173 CERKQ8TCT0 537 aa16.59■□□□□ 0.25
NUP54-203ENST00000504173 SPATA31D1Q6ZQQ2 1576 aa16.56■□□□□ 0.24
NUP54-203ENST00000504173 TNIKQ9UKE5 1360 aa16.56■□□□□ 0.24
NUP54-203ENST00000504173 ADAMTSL3P82987 1691 aa16.55■□□□□ 0.24
NUP54-203ENST00000504173 KIF21BO75037 1637 aa16.55■□□□□ 0.24
NUP54-203ENST00000504173 KDM5BQ9UGL1 1544 aa16.55■□□□□ 0.24
NUP54-203ENST00000504173 PRXQ9BXM0 1461 aa16.54■□□□□ 0.24
NUP54-203ENST00000504173 RAPGEF2Q9Y4G8 1499 aa16.54■□□□□ 0.24
NUP54-203ENST00000504173 UACAQ9BZF9 1416 aa16.52■□□□□ 0.23
NUP54-203ENST00000504173 MAGI3Q5TCQ9 1506 aa16.51■□□□□ 0.23
NUP54-203ENST00000504173 CARMIL2Q6F5E8 1435 aa16.5■□□□□ 0.23
NUP54-203ENST00000504173 WDR7Q9Y4E6 1490 aa16.44■□□□□ 0.22
NUP54-203ENST00000504173 ZCCHC11Q5TAX3 1644 aaKnown RBP16.43■□□□□ 0.22
NUP54-203ENST00000504173 CD109Q6YHK3 1445 aa16.42■□□□□ 0.22
NUP54-203ENST00000504173 TTBK1Q5TCY1 1321 aaPredicted RBP16.42■□□□□ 0.22
NUP54-203ENST00000504173 ARAP3Q8WWN8 1544 aa16.41■□□□□ 0.22
NUP54-203ENST00000504173 EHMT2Q96KQ7 1210 aa16.41■□□□□ 0.22
NUP54-203ENST00000504173 GOLGA3Q08378 1498 aa16.41■□□□□ 0.22
NUP54-203ENST00000504173 CFAP43Q8NDM7 1665 aa16.4■□□□□ 0.22
NUP54-203ENST00000504173 BCORL1Q5H9F3 1711 aa16.39■□□□□ 0.21
NUP54-203ENST00000504173 MADDQ8WXG6 1647 aa16.37■□□□□ 0.21
NUP54-203ENST00000504173 CTTNBP2Q8WZ74 1663 aa16.37■□□□□ 0.21
NUP54-203ENST00000504173 HSPA2P54652 639 aa16.37■□□□□ 0.21
NUP54-203ENST00000504173 IQGAP2Q13576 1575 aa16.36■□□□□ 0.21
NUP54-203ENST00000504173 UBTFP17480 764 aaKnown RBP16.35■□□□□ 0.21
NUP54-203ENST00000504173 DISP1Q96F81 1524 aa16.35■□□□□ 0.21
NUP54-203ENST00000504173 PHLDB1Q86UU1 1377 aa16.3■□□□□ 0.2
NUP54-203ENST00000504173 UGGT2Q9NYU1 1516 aa16.28■□□□□ 0.2
NUP54-203ENST00000504173 RIMS1Q86UR5 1692 aaKnown RBP16.26■□□□□ 0.19
NUP54-203ENST00000504173 RANGAP1P46060 587 aaPredicted RBP16.24■□□□□ 0.19
NUP54-203ENST00000504173 LOC105371045A0A1W2PR82 267 aa16.23■□□□□ 0.19
NUP54-203ENST00000504173 ARID4BQ4LE39 1312 aaPredicted RBP16.21■□□□□ 0.19
NUP54-203ENST00000504173 KCNH8Q96L42 1107 aa16.21■□□□□ 0.19
NUP54-203ENST00000504173 DMRT2Q9Y5R5 561 aa16.21■□□□□ 0.19
NUP54-203ENST00000504173 YEATS2Q9ULM3 1422 aa16.2■□□□□ 0.18
NUP54-203ENST00000504173 KIAA0556O60303 1618 aa16.2■□□□□ 0.18
NUP54-203ENST00000504173 IQSEC2Q5JU85 1478 aa16.2■□□□□ 0.18
NUP54-203ENST00000504173 RAPGEF3O95398 923 aa16.18■□□□□ 0.18
NUP54-203ENST00000504173 SAMD9Q5K651 1589 aa16.17■□□□□ 0.18
NUP54-203ENST00000504173 FRMPD1Q5SYB0 1578 aa16.17■□□□□ 0.18
NUP54-203ENST00000504173 ARHGEF40Q8TER5 1519 aa16.17■□□□□ 0.18
NUP54-203ENST00000504173 NEO1Q92859 1461 aa16.16■□□□□ 0.18
NUP54-203ENST00000504173 EFCAB5A4FU69 1503 aa16.16■□□□□ 0.18
NUP54-203ENST00000504173 P3H3Q8IVL6 736 aa16.16■□□□□ 0.18
NUP54-203ENST00000504173 POGZQ7Z3K3 1410 aa16.13■□□□□ 0.17
NUP54-203ENST00000504173 STRCQ7RTU9 1775 aa16.13■□□□□ 0.17
NUP54-203ENST00000504173 ABCA8O94911 1581 aa16.13■□□□□ 0.17
NUP54-203ENST00000504173 TTC37Q6PGP7 1564 aa16.12■□□□□ 0.17
NUP54-203ENST00000504173 ABCA9Q8IUA7 1624 aa16.12■□□□□ 0.17
NUP54-203ENST00000504173 CLIP1P30622 1438 aa16.11■□□□□ 0.17
NUP54-203ENST00000504173 FHOD3Q2V2M9 1422 aa16.11■□□□□ 0.17
NUP54-203ENST00000504173 ARHGAP35Q9NRY4 1499 aa16.11■□□□□ 0.17
NUP54-203ENST00000504173 LTBP4Q8N2S1 1624 aa16.11■□□□□ 0.17
NUP54-203ENST00000504173 PTPRTO14522 1441 aa16.11■□□□□ 0.17
NUP54-203ENST00000504173 CEP162Q5TB80 1403 aa16.11■□□□□ 0.17
NUP54-203ENST00000504173 PREX1Q8TCU6 1659 aa16.1■□□□□ 0.17
NUP54-203ENST00000504173 FANCAO15360 1455 aa16.1■□□□□ 0.17
NUP54-203ENST00000504173 PLPPR3Q6T4P5 718 aa16.05■□□□□ 0.16
NUP54-203ENST00000504173 AKNAQ7Z591 1439 aa16.04■□□□□ 0.16
NUP54-203ENST00000504173 FER1L4A9Z1Z3 1794 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms