RNA–Protein interactions for RNA: ENST00000503324.1

SMAD1-204, Transcript of SMAD family member 1, humanhuman

TSL 4

Gene SMAD1, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-204ENST00000503324 CSRNP3Q8WYN3 585 aa29.69■■■□□ 2.34
SMAD1-204ENST00000503324 SHROOM2Q13796 1616 aa29.69■■■□□ 2.34
SMAD1-204ENST00000503324 KIAA0586Q9BVV6 1533 aa29.67■■■□□ 2.34
SMAD1-204ENST00000503324 FAM9AQ8IZU1 332 aaPredicted RBP29.61■■■□□ 2.33
SMAD1-204ENST00000503324 ARAP1Q96P48 1450 aa29.6■■■□□ 2.33
SMAD1-204ENST00000503324 ERCC6L2Q5T890 1561 aa29.6■■■□□ 2.33
SMAD1-204ENST00000503324 JPH4Q96JJ6 628 aa29.59■■■□□ 2.33
SMAD1-204ENST00000503324 PRG4Q92954 1404 aaPredicted RBP29.54■■■□□ 2.32
SMAD1-204ENST00000503324 IQGAP2Q13576 1575 aa29.52■■■□□ 2.32
SMAD1-204ENST00000503324 CYB5RLQ6IPT4 315 aa29.49■■■□□ 2.31
SMAD1-204ENST00000503324 KIF21BO75037 1637 aa29.45■■■□□ 2.31
SMAD1-204ENST00000503324 CTTNBP2Q8WZ74 1663 aa29.45■■■□□ 2.31
SMAD1-204ENST00000503324 UGGT2Q9NYU1 1516 aa29.39■■■□□ 2.3
SMAD1-204ENST00000503324 DISP1Q96F81 1524 aa29.34■■■□□ 2.29
SMAD1-204ENST00000503324 CARMIL2Q6F5E8 1435 aa29.3■■■□□ 2.28
SMAD1-204ENST00000503324 GOLGA3Q08378 1498 aa29.28■■■□□ 2.28
SMAD1-204ENST00000503324 KIAA0556O60303 1618 aa29.25■■■□□ 2.27
SMAD1-204ENST00000503324 TNIKQ9UKE5 1360 aa29.23■■■□□ 2.27
SMAD1-204ENST00000503324 EHMT2Q96KQ7 1210 aa29.2■■■□□ 2.26
SMAD1-204ENST00000503324 PTPRGP23470 1445 aa29.19■■■□□ 2.26
SMAD1-204ENST00000503324 UBTFP17480 764 aaKnown RBP29.14■■■□□ 2.26
SMAD1-204ENST00000503324 SAMD9Q5K651 1589 aa29.13■■■□□ 2.25
SMAD1-204ENST00000503324 TTBK1Q5TCY1 1321 aaPredicted RBP29.1■■■□□ 2.25
SMAD1-204ENST00000503324 ADCY10Q96PN6 1610 aa29.09■■■□□ 2.25
SMAD1-204ENST00000503324 RANGAP1P46060 587 aaPredicted RBP29.03■■■□□ 2.24
SMAD1-204ENST00000503324 P3H3Q8IVL6 736 aa29.02■■■□□ 2.24
SMAD1-204ENST00000503324 UACAQ9BZF9 1416 aa29.02■■■□□ 2.24
SMAD1-204ENST00000503324 UHRF1BP1LA0JNW5 1464 aa29■■■□□ 2.23
SMAD1-204ENST00000503324 EFCAB5A4FU69 1503 aa28.99■■■□□ 2.23
SMAD1-204ENST00000503324 ABCC2Q92887 1545 aa28.97■■■□□ 2.23
SMAD1-204ENST00000503324 PLB1Q6P1J6 1458 aa28.96■■■□□ 2.23
SMAD1-204ENST00000503324 FHOD3Q2V2M9 1422 aa28.94■■■□□ 2.22
SMAD1-204ENST00000503324 ABCA8O94911 1581 aa28.94■■■□□ 2.22
SMAD1-204ENST00000503324 ARHGAP35Q9NRY4 1499 aa28.91■■■□□ 2.22
SMAD1-204ENST00000503324 NPM1P06748 294 aaKnown RBP eCLIP28.88■■■□□ 2.21
SMAD1-204ENST00000503324 MAPKBP1O60336 1514 aa28.87■■■□□ 2.21
SMAD1-204ENST00000503324 KDM5BQ9UGL1 1544 aa28.86■■■□□ 2.21
SMAD1-204ENST00000503324 LOC105371045A0A1W2PR82 267 aa28.8■■■□□ 2.2
SMAD1-204ENST00000503324 TRHP20396 242 aaPredicted RBP28.8■■■□□ 2.2
SMAD1-204ENST00000503324 ZCCHC11Q5TAX3 1644 aaKnown RBP28.79■■■□□ 2.2
SMAD1-204ENST00000503324 RAPGEF6Q8TEU7 1601 aa28.79■■■□□ 2.2
SMAD1-204ENST00000503324 CLIP1P30622 1438 aa28.75■■■□□ 2.19
SMAD1-204ENST00000503324 ASXL2Q76L83 1435 aa28.73■■■□□ 2.19
SMAD1-204ENST00000503324 NUP153P49790 1475 aaKnown RBP28.72■■■□□ 2.19
SMAD1-204ENST00000503324 FMN1Q68DA7 1419 aa28.71■■■□□ 2.19
SMAD1-204ENST00000503324 ABCC10Q5T3U5 1492 aa28.71■■■□□ 2.19
SMAD1-204ENST00000503324 ATP10BO94823 1461 aa28.69■■■□□ 2.18
SMAD1-204ENST00000503324 CEP162Q5TB80 1403 aa28.68■■■□□ 2.18
SMAD1-204ENST00000503324 DIP2BQ9P265 1576 aa28.67■■■□□ 2.18
SMAD1-204ENST00000503324 KIF13AQ9H1H9 1805 aa28.67■■■□□ 2.18
SMAD1-204ENST00000503324 ARID3CA6NKF2 412 aa28.65■■■□□ 2.18
SMAD1-204ENST00000503324 FAM69CQ0P6D2 419 aa28.61■■■□□ 2.17
SMAD1-204ENST00000503324 WDR7Q9Y4E6 1490 aa28.6■■■□□ 2.17
SMAD1-204ENST00000503324 EPRSP07814 1512 aaKnown RBP28.57■■■□□ 2.16
SMAD1-204ENST00000503324 HECW1Q76N89 1606 aa28.56■■■□□ 2.16
SMAD1-204ENST00000503324 GLI2P10070 1586 aa28.55■■■□□ 2.16
SMAD1-204ENST00000503324 PCF11O94913 1555 aaKnown RBP28.54■■■□□ 2.16
SMAD1-204ENST00000503324 CASKIN1Q8WXD9 1431 aa28.53■■■□□ 2.16
SMAD1-204ENST00000503324 CDK13Q14004 1512 aaKnown RBP28.51■■■□□ 2.15
SMAD1-204ENST00000503324 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.49■■■□□ 2.15
SMAD1-204ENST00000503324 HNRNPUL2Q1KMD3 747 aaKnown RBP28.49■■■□□ 2.15
SMAD1-204ENST00000503324 ATP1B4Q9UN42 357 aaPredicted RBP28.48■■■□□ 2.15
SMAD1-204ENST00000503324 FYCO1Q9BQS8 1478 aa28.46■■■□□ 2.15
SMAD1-204ENST00000503324 LRRIQ1Q96JM4 1722 aa28.46■■■□□ 2.15
SMAD1-204ENST00000503324 KCNH8Q96L42 1107 aa28.44■■■□□ 2.14
SMAD1-204ENST00000503324 MAP3K4Q9Y6R4 1608 aa28.43■■■□□ 2.14
SMAD1-204ENST00000503324 PLEKHD1A6NEE1 506 aa28.39■■■□□ 2.14
SMAD1-204ENST00000503324 CCDC18Q5T9S5 1454 aa28.38■■■□□ 2.13
SMAD1-204ENST00000503324 PPRC1Q5VV67 1664 aaKnown RBP28.38■■■□□ 2.13
SMAD1-204ENST00000503324 TSPOAP1O95153 1857 aa28.37■■■□□ 2.13
SMAD1-204ENST00000503324 CFAP43Q8NDM7 1665 aa28.34■■■□□ 2.13
SMAD1-204ENST00000503324 ABCA9Q8IUA7 1624 aa28.33■■■□□ 2.13
SMAD1-204ENST00000503324 VPS8Q8N3P4 1428 aa28.32■■■□□ 2.12
SMAD1-204ENST00000503324 CD109Q6YHK3 1445 aa28.31■■■□□ 2.12
SMAD1-204ENST00000503324 CDK11AQ9UQ88 783 aaPredicted RBP28.3■■■□□ 2.12
SMAD1-204ENST00000503324 TROQ12816 1431 aaPredicted RBP28.28■■■□□ 2.12
SMAD1-204ENST00000503324 MAGI3Q5TCQ9 1506 aa28.28■■■□□ 2.12
SMAD1-204ENST00000503324 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.26■■■□□ 2.11
SMAD1-204ENST00000503324 TEX14Q8IWB6 1497 aa28.24■■■□□ 2.11
SMAD1-204ENST00000503324 TTC37Q6PGP7 1564 aa28.23■■■□□ 2.11
SMAD1-204ENST00000503324 KIF14Q15058 1648 aa28.21■■■□□ 2.11
SMAD1-204ENST00000503324 KDM6BO15054 1643 aa28.14■■■□□ 2.09
SMAD1-204ENST00000503324 COL17A1Q9UMD9 1497 aaPredicted RBP28.12■■■□□ 2.09
SMAD1-204ENST00000503324 TIAM1Q13009 1591 aa28.11■■■□□ 2.09
SMAD1-204ENST00000503324 PLCH2O75038 1416 aa28.09■■■□□ 2.09
SMAD1-204ENST00000503324 MTUS2Q5JR59 1369 aa28.08■■■□□ 2.09
SMAD1-204ENST00000503324 NEO1Q92859 1461 aa28.08■■■□□ 2.09
SMAD1-204ENST00000503324 MAP3K1Q13233 1512 aa28.07■■■□□ 2.08
SMAD1-204ENST00000503324 EHBP1L1Q8N3D4 1523 aa28.07■■■□□ 2.08
SMAD1-204ENST00000503324 MYO5CQ9NQX4 1742 aa28.05■■■□□ 2.08
SMAD1-204ENST00000503324 ARAP3Q8WWN8 1544 aa28.04■■■□□ 2.08
SMAD1-204ENST00000503324 PHLDB1Q86UU1 1377 aa28.04■■■□□ 2.08
SMAD1-204ENST00000503324 FANCAO15360 1455 aa28.03■■■□□ 2.08
SMAD1-204ENST00000503324 CFAP74Q9C0B2 1584 aa27.99■■■□□ 2.07
SMAD1-204ENST00000503324 LRRC9Q6ZRR7 1453 aa27.99■■■□□ 2.07
SMAD1-204ENST00000503324 AKNAQ7Z591 1439 aa27.99■■■□□ 2.07
SMAD1-204ENST00000503324 PREX2Q70Z35 1606 aa27.98■■■□□ 2.07
SMAD1-204ENST00000503324 CDC42BPAQ5VT25 1732 aa27.96■■■□□ 2.07
SMAD1-204ENST00000503324 CDC42BPBQ9Y5S2 1711 aa27.96■■■□□ 2.07
SMAD1-204ENST00000503324 KANK4Q5T7N3 995 aaPredicted RBP27.95■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms