RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 KANK4Q5T7N3 995 aaPredicted RBP14.74□□□□□ -0.05
LIMCH1-205ENST00000503057 TSPY4P0CV99 314 aa14.73□□□□□ -0.05
LIMCH1-205ENST00000503057 TSPY10P0CW01 314 aa14.73□□□□□ -0.05
LIMCH1-205ENST00000503057 SETD5Q9C0A6 1442 aa14.73□□□□□ -0.05
LIMCH1-205ENST00000503057 EIF4G2P78344 907 aaKnown RBP eCLIP14.72□□□□□ -0.05
LIMCH1-205ENST00000503057 TIMELESSQ9UNS1 1208 aa14.71□□□□□ -0.05
LIMCH1-205ENST00000503057 EIF4G1Q04637 1599 aaKnown RBP14.71□□□□□ -0.06
LIMCH1-205ENST00000503057 PDS5BQ9NTI5 1447 aa14.69□□□□□ -0.06
LIMCH1-205ENST00000503057 FMN1Q68DA7 1419 aa14.68□□□□□ -0.06
LIMCH1-205ENST00000503057 RTL5Q5HYW3 569 aaPredicted RBP14.68□□□□□ -0.06
LIMCH1-205ENST00000503057 KIF21BO75037 1637 aa14.68□□□□□ -0.06
LIMCH1-205ENST00000503057 HIRIP3Q9BW71 556 aaPredicted RBP14.67□□□□□ -0.06
LIMCH1-205ENST00000503057 FAM9BQ8IZU0 186 aa14.67□□□□□ -0.06
LIMCH1-205ENST00000503057 PLEKHD1A6NEE1 506 aa14.66□□□□□ -0.06
LIMCH1-205ENST00000503057 SIN3AQ96ST3 1273 aa14.65□□□□□ -0.06
LIMCH1-205ENST00000503057 NCAPD3P42695 1498 aa14.63□□□□□ -0.07
LIMCH1-205ENST00000503057 CFDP1Q9UEE9 299 aaPredicted RBP14.63□□□□□ -0.07
LIMCH1-205ENST00000503057 RAB3GAP2Q9H2M9 1393 aa14.63□□□□□ -0.07
LIMCH1-205ENST00000503057 MRS2Q9HD23 443 aa14.62□□□□□ -0.07
LIMCH1-205ENST00000503057 ERCC6Q03468 1493 aa14.62□□□□□ -0.07
LIMCH1-205ENST00000503057 SYNJ1O43426 1573 aa14.6□□□□□ -0.07
LIMCH1-205ENST00000503057 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.59□□□□□ -0.07
LIMCH1-205ENST00000503057 FANCD2Q9BXW9 1451 aa14.59□□□□□ -0.07
LIMCH1-205ENST00000503057 TMC1Q8TDI8 760 aa14.59□□□□□ -0.07
LIMCH1-205ENST00000503057 ERICH3Q5RHP9 1530 aa14.57□□□□□ -0.08
LIMCH1-205ENST00000503057 KDM2AQ9Y2K7 1162 aa14.57□□□□□ -0.08
LIMCH1-205ENST00000503057 TDRD9Q8NDG6 1382 aaKnown RBP14.56□□□□□ -0.08
LIMCH1-205ENST00000503057 FHOD3Q2V2M9 1422 aa14.56□□□□□ -0.08
LIMCH1-205ENST00000503057 ANP32AP39687 249 aaKnown RBP14.54□□□□□ -0.08
LIMCH1-205ENST00000503057 CANXP27824 592 aaKnown RBP14.54□□□□□ -0.08
LIMCH1-205ENST00000503057 DHX57Q6P158 1386 aaKnown RBP14.53□□□□□ -0.08
LIMCH1-205ENST00000503057 FGD5Q6ZNL6 1462 aa14.53□□□□□ -0.08
LIMCH1-205ENST00000503057 TOP2BQ02880 1626 aa14.53□□□□□ -0.08
LIMCH1-205ENST00000503057 NPM1P06748 294 aaKnown RBP eCLIP14.53□□□□□ -0.08
LIMCH1-205ENST00000503057 HMGXB3Q12766 1538 aa14.52□□□□□ -0.09
LIMCH1-205ENST00000503057 IGF1RP08069 1367 aa14.5□□□□□ -0.09
LIMCH1-205ENST00000503057 CCER2I3L3R5 266 aa14.49□□□□□ -0.09
LIMCH1-205ENST00000503057 CFTRP13569 1480 aa14.48□□□□□ -0.09
LIMCH1-205ENST00000503057 NEFMP07197 916 aa14.47□□□□□ -0.09
LIMCH1-205ENST00000503057 CHGAP10645 457 aaKnown RBP14.47□□□□□ -0.09
LIMCH1-205ENST00000503057 CARMIL2Q6F5E8 1435 aa14.46□□□□□ -0.09
LIMCH1-205ENST00000503057 BICRAQ9NZM4 1560 aa14.46□□□□□ -0.1
LIMCH1-205ENST00000503057 CCDC136Q96JN2 1154 aa14.45□□□□□ -0.1
LIMCH1-205ENST00000503057 KCNH8Q96L42 1107 aa14.44□□□□□ -0.1
LIMCH1-205ENST00000503057 CARD11Q9BXL7 1154 aa14.44□□□□□ -0.1
LIMCH1-205ENST00000503057 WDR43Q15061 677 aaKnown RBP eCLIP14.44□□□□□ -0.1
LIMCH1-205ENST00000503057 SUPT16HQ9Y5B9 1047 aaKnown RBP14.43□□□□□ -0.1
LIMCH1-205ENST00000503057 CCDC18Q5T9S5 1454 aa14.43□□□□□ -0.1
LIMCH1-205ENST00000503057 PEG3Q9GZU2 1588 aa14.42□□□□□ -0.1
LIMCH1-205ENST00000503057 PPP1R15AO75807 674 aaPredicted RBP14.42□□□□□ -0.1
LIMCH1-205ENST00000503057 PRXQ9BXM0 1461 aa14.41□□□□□ -0.1
LIMCH1-205ENST00000503057 IRX6P78412 446 aaPredicted RBP14.41□□□□□ -0.1
LIMCH1-205ENST00000503057 SALL2Q9Y467 1007 aaPredicted RBP14.4□□□□□ -0.1
LIMCH1-205ENST00000503057 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.4□□□□□ -0.1
LIMCH1-205ENST00000503057 UNC13AQ9UPW8 1703 aa14.4□□□□□ -0.1
LIMCH1-205ENST00000503057 CUX1P39880 1505 aa14.39□□□□□ -0.11
LIMCH1-205ENST00000503057 HSPA5P11021 654 aaKnown RBP14.39□□□□□ -0.11
LIMCH1-205ENST00000503057 MPHOSPH9Q99550 1183 aa14.39□□□□□ -0.11
LIMCH1-205ENST00000503057 ARAP1Q96P48 1450 aa14.38□□□□□ -0.11
LIMCH1-205ENST00000503057 RGL3Q3MIN7 710 aa14.38□□□□□ -0.11
LIMCH1-205ENST00000503057 GAPVD1Q14C86 1478 aa14.38□□□□□ -0.11
LIMCH1-205ENST00000503057 RAD54L2Q9Y4B4 1467 aa14.38□□□□□ -0.11
LIMCH1-205ENST00000503057 LRRC9Q6ZRR7 1453 aa14.38□□□□□ -0.11
LIMCH1-205ENST00000503057 ZBTB47Q9UFB7 747 aaPredicted RBP14.37□□□□□ -0.11
LIMCH1-205ENST00000503057 CDCA8Q53HL2 280 aa14.37□□□□□ -0.11
LIMCH1-205ENST00000503057 NPM2Q86SE8 214 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-205ENST00000503057 RRBP1Q9P2E9 1410 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-205ENST00000503057 STAG3Q9UJ98 1225 aa14.35□□□□□ -0.11
LIMCH1-205ENST00000503057 ANKRD30AQ9BXX3 1397 aa14.35□□□□□ -0.11
LIMCH1-205ENST00000503057 CASKIN1Q8WXD9 1431 aa14.33□□□□□ -0.11
LIMCH1-205ENST00000503057 ESF1Q9H501 851 aaKnown RBP14.33□□□□□ -0.12
LIMCH1-205ENST00000503057 FYCO1Q9BQS8 1478 aa14.32□□□□□ -0.12
LIMCH1-205ENST00000503057 EFCAB5A4FU69 1503 aa14.32□□□□□ -0.12
LIMCH1-205ENST00000503057 PKD2Q13563 968 aa14.31□□□□□ -0.12
LIMCH1-205ENST00000503057 FGD6Q6ZV73 1430 aa14.31□□□□□ -0.12
LIMCH1-205ENST00000503057 PPP4R2Q9NY27 417 aa14.3□□□□□ -0.12
LIMCH1-205ENST00000503057 FOXD1Q16676 465 aa14.3□□□□□ -0.12
LIMCH1-205ENST00000503057 DCAF11Q8TEB1 546 aa14.3□□□□□ -0.12
LIMCH1-205ENST00000503057 PHLDB1Q86UU1 1377 aa14.3□□□□□ -0.12
LIMCH1-205ENST00000503057 KNSTRNQ9Y448 316 aa14.29□□□□□ -0.12
LIMCH1-205ENST00000503057 MYOM3Q5VTT5 1437 aa14.28□□□□□ -0.12
LIMCH1-205ENST00000503057 CC2D2AQ9P2K1 1620 aa14.28□□□□□ -0.12
LIMCH1-205ENST00000503057 NUP155O75694 1391 aa14.26□□□□□ -0.13
LIMCH1-205ENST00000503057 BIVM-ERCC5R4GMW8 1640 aa14.26□□□□□ -0.13
LIMCH1-205ENST00000503057 TIAM1Q13009 1591 aa14.25□□□□□ -0.13
LIMCH1-205ENST00000503057 KANK1Q14678 1352 aa14.25□□□□□ -0.13
LIMCH1-205ENST00000503057 L3MBTL2Q969R5 705 aa14.25□□□□□ -0.13
LIMCH1-205ENST00000503057 DNMBPQ6XZF7 1577 aa14.24□□□□□ -0.13
LIMCH1-205ENST00000503057 TMF1P82094 1093 aa14.24□□□□□ -0.13
LIMCH1-205ENST00000503057 UPF2Q9HAU5 1272 aaKnown RBP14.24□□□□□ -0.13
LIMCH1-205ENST00000503057 TOPBP1Q92547 1522 aa14.23□□□□□ -0.13
LIMCH1-205ENST00000503057 UACAQ9BZF9 1416 aa14.23□□□□□ -0.13
LIMCH1-205ENST00000503057 SLC24A1O60721 1099 aa14.23□□□□□ -0.13
LIMCH1-205ENST00000503057 RSPH4AQ5TD94 716 aa14.22□□□□□ -0.13
LIMCH1-205ENST00000503057 NCOA2Q15596 1464 aa14.21□□□□□ -0.13
LIMCH1-205ENST00000503057 ERICH6BQ5W0A0 696 aa14.21□□□□□ -0.13
LIMCH1-205ENST00000503057 JPH4Q96JJ6 628 aa14.21□□□□□ -0.14
LIMCH1-205ENST00000503057 POLA1P09884 1462 aaPredicted RBP14.2□□□□□ -0.14
LIMCH1-205ENST00000503057 ROCK2O75116 1388 aaKnown RBP14.2□□□□□ -0.14
LIMCH1-205ENST00000503057 EHBP1L1Q8N3D4 1523 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms