RNA–Protein interactions for RNA: ENST00000497564.5

VPS26A-209, Transcript of VPS26, retromer complex component A, humanhuman

TSL 5

Gene VPS26A, Length 462 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26A-209ENST00000497564 KIF21BO75037 1637 aa23.25■■□□□ 1.31
VPS26A-209ENST00000497564 CSRNP3Q8WYN3 585 aa23.24■■□□□ 1.31
VPS26A-209ENST00000497564 CUL7Q14999 1698 aa23.2■■□□□ 1.3
VPS26A-209ENST00000497564 SHROOM2Q13796 1616 aa23.19■■□□□ 1.3
VPS26A-209ENST00000497564 CARMIL1Q5VZK9 1371 aa23.15■■□□□ 1.3
VPS26A-209ENST00000497564 PRXQ9BXM0 1461 aa23.14■■□□□ 1.29
VPS26A-209ENST00000497564 AEBP2Q6ZN18 517 aaPredicted RBP23.1■■□□□ 1.29
VPS26A-209ENST00000497564 JPH4Q96JJ6 628 aa23.1■■□□□ 1.29
VPS26A-209ENST00000497564 GOLGA3Q08378 1498 aa23.1■■□□□ 1.29
VPS26A-209ENST00000497564 PRG4Q92954 1404 aaPredicted RBP23.09■■□□□ 1.29
VPS26A-209ENST00000497564 LOC105371045A0A1W2PR82 267 aa23.08■■□□□ 1.29
VPS26A-209ENST00000497564 KIAA0586Q9BVV6 1533 aa23.06■■□□□ 1.28
VPS26A-209ENST00000497564 RAPGEF2Q9Y4G8 1499 aa23.02■■□□□ 1.28
VPS26A-209ENST00000497564 TNIKQ9UKE5 1360 aa22.95■■□□□ 1.26
VPS26A-209ENST00000497564 TRHP20396 242 aaPredicted RBP22.92■■□□□ 1.26
VPS26A-209ENST00000497564 IQGAP2Q13576 1575 aa22.91■■□□□ 1.26
VPS26A-209ENST00000497564 CTTNBP2Q8WZ74 1663 aa22.9■■□□□ 1.26
VPS26A-209ENST00000497564 EHMT2Q96KQ7 1210 aa22.85■■□□□ 1.25
VPS26A-209ENST00000497564 UBTFP17480 764 aaKnown RBP22.84■■□□□ 1.25
VPS26A-209ENST00000497564 DISP1Q96F81 1524 aa22.81■■□□□ 1.24
VPS26A-209ENST00000497564 TTBK1Q5TCY1 1321 aaPredicted RBP22.81■■□□□ 1.24
VPS26A-209ENST00000497564 ADCY10Q96PN6 1610 aa22.79■■□□□ 1.24
VPS26A-209ENST00000497564 UGGT2Q9NYU1 1516 aa22.78■■□□□ 1.24
VPS26A-209ENST00000497564 CEP162Q5TB80 1403 aa22.78■■□□□ 1.24
VPS26A-209ENST00000497564 CARMIL2Q6F5E8 1435 aa22.78■■□□□ 1.24
VPS26A-209ENST00000497564 PTPRGP23470 1445 aa22.77■■□□□ 1.24
VPS26A-209ENST00000497564 KIAA0556O60303 1618 aa22.71■■□□□ 1.23
VPS26A-209ENST00000497564 CLIP1P30622 1438 aa22.66■■□□□ 1.22
VPS26A-209ENST00000497564 NPM1P06748 294 aaKnown RBP eCLIP22.64■■□□□ 1.21
VPS26A-209ENST00000497564 KIF13AQ9H1H9 1805 aa22.62■■□□□ 1.21
VPS26A-209ENST00000497564 MAPKBP1O60336 1514 aa22.62■■□□□ 1.21
VPS26A-209ENST00000497564 UACAQ9BZF9 1416 aa22.61■■□□□ 1.21
VPS26A-209ENST00000497564 EFCAB5A4FU69 1503 aa22.61■■□□□ 1.21
VPS26A-209ENST00000497564 ABCC2Q92887 1545 aa22.59■■□□□ 1.21
VPS26A-209ENST00000497564 UHRF1BP1LA0JNW5 1464 aa22.58■■□□□ 1.2
VPS26A-209ENST00000497564 SAMD9Q5K651 1589 aa22.58■■□□□ 1.2
VPS26A-209ENST00000497564 ARHGAP35Q9NRY4 1499 aa22.57■■□□□ 1.2
VPS26A-209ENST00000497564 ABCC10Q5T3U5 1492 aa22.56■■□□□ 1.2
VPS26A-209ENST00000497564 PLB1Q6P1J6 1458 aa22.55■■□□□ 1.2
VPS26A-209ENST00000497564 P3H3Q8IVL6 736 aa22.55■■□□□ 1.2
VPS26A-209ENST00000497564 DIP2BQ9P265 1576 aa22.54■■□□□ 1.2
VPS26A-209ENST00000497564 FAM69CQ0P6D2 419 aa22.53■■□□□ 1.2
VPS26A-209ENST00000497564 RANGAP1P46060 587 aaPredicted RBP22.51■■□□□ 1.19
VPS26A-209ENST00000497564 KDM5BQ9UGL1 1544 aa22.5■■□□□ 1.19
VPS26A-209ENST00000497564 ASXL2Q76L83 1435 aa22.49■■□□□ 1.19
VPS26A-209ENST00000497564 ABCA8O94911 1581 aa22.49■■□□□ 1.19
VPS26A-209ENST00000497564 ZCCHC11Q5TAX3 1644 aaKnown RBP22.47■■□□□ 1.19
VPS26A-209ENST00000497564 VPS8Q8N3P4 1428 aa22.46■■□□□ 1.19
VPS26A-209ENST00000497564 FHOD3Q2V2M9 1422 aa22.4■■□□□ 1.18
VPS26A-209ENST00000497564 ARID3CA6NKF2 412 aa22.38■■□□□ 1.17
VPS26A-209ENST00000497564 TSPOAP1O95153 1857 aa22.38■■□□□ 1.17
VPS26A-209ENST00000497564 EPRSP07814 1512 aaKnown RBP22.36■■□□□ 1.17
VPS26A-209ENST00000497564 GLI2P10070 1586 aa22.33■■□□□ 1.17
VPS26A-209ENST00000497564 WDR7Q9Y4E6 1490 aa22.33■■□□□ 1.16
VPS26A-209ENST00000497564 FMN1Q68DA7 1419 aa22.31■■□□□ 1.16
VPS26A-209ENST00000497564 ATP10BO94823 1461 aa22.31■■□□□ 1.16
VPS26A-209ENST00000497564 RAPGEF6Q8TEU7 1601 aa22.31■■□□□ 1.16
VPS26A-209ENST00000497564 PCF11O94913 1555 aaKnown RBP22.3■■□□□ 1.16
VPS26A-209ENST00000497564 PPRC1Q5VV67 1664 aaKnown RBP22.3■■□□□ 1.16
VPS26A-209ENST00000497564 NUP153P49790 1475 aaKnown RBP22.27■■□□□ 1.16
VPS26A-209ENST00000497564 FYCO1Q9BQS8 1478 aa22.27■■□□□ 1.16
VPS26A-209ENST00000497564 MAP3K4Q9Y6R4 1608 aa22.25■■□□□ 1.15
VPS26A-209ENST00000497564 KCNH8Q96L42 1107 aa22.25■■□□□ 1.15
VPS26A-209ENST00000497564 CASKIN1Q8WXD9 1431 aa22.24■■□□□ 1.15
VPS26A-209ENST00000497564 CFAP43Q8NDM7 1665 aa22.23■■□□□ 1.15
VPS26A-209ENST00000497564 MAP3K1Q13233 1512 aa22.22■■□□□ 1.15
VPS26A-209ENST00000497564 LRRIQ1Q96JM4 1722 aa22.22■■□□□ 1.15
VPS26A-209ENST00000497564 KDM6BO15054 1643 aa22.2■■□□□ 1.15
VPS26A-209ENST00000497564 HECW1Q76N89 1606 aa22.19■■□□□ 1.14
VPS26A-209ENST00000497564 TIAM1Q13009 1591 aa22.17■■□□□ 1.14
VPS26A-209ENST00000497564 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.16■■□□□ 1.14
VPS26A-209ENST00000497564 HNRNPUL2Q1KMD3 747 aaKnown RBP22.16■■□□□ 1.14
VPS26A-209ENST00000497564 COL17A1Q9UMD9 1497 aaPredicted RBP22.15■■□□□ 1.14
VPS26A-209ENST00000497564 CD109Q6YHK3 1445 aa22.14■■□□□ 1.13
VPS26A-209ENST00000497564 CDK13Q14004 1512 aaKnown RBP22.12■■□□□ 1.13
VPS26A-209ENST00000497564 APLP2Q06481 763 aa22.11■■□□□ 1.13
VPS26A-209ENST00000497564 TEX14Q8IWB6 1497 aa22.1■■□□□ 1.13
VPS26A-209ENST00000497564 CCDC18Q5T9S5 1454 aa22.09■■□□□ 1.13
VPS26A-209ENST00000497564 MAGI3Q5TCQ9 1506 aa22.09■■□□□ 1.13
VPS26A-209ENST00000497564 ABCA9Q8IUA7 1624 aa22.07■■□□□ 1.12
VPS26A-209ENST00000497564 ATP1B4Q9UN42 357 aaPredicted RBP22.07■■□□□ 1.12
VPS26A-209ENST00000497564 PLEKHD1A6NEE1 506 aa22.03■■□□□ 1.12
VPS26A-209ENST00000497564 LRRC9Q6ZRR7 1453 aa22.02■■□□□ 1.12
VPS26A-209ENST00000497564 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.96■■□□□ 1.11
VPS26A-209ENST00000497564 TTC37Q6PGP7 1564 aa21.96■■□□□ 1.11
VPS26A-209ENST00000497564 EHBP1L1Q8N3D4 1523 aa21.96■■□□□ 1.11
VPS26A-209ENST00000497564 KANK4Q5T7N3 995 aaPredicted RBP21.94■■□□□ 1.1
VPS26A-209ENST00000497564 PPARGC1BQ86YN6 1023 aaKnown RBP21.94■■□□□ 1.1
VPS26A-209ENST00000497564 SUPT6HQ7KZ85 1726 aaKnown RBP21.92■■□□□ 1.1
VPS26A-209ENST00000497564 ARAP3Q8WWN8 1544 aa21.9■■□□□ 1.1
VPS26A-209ENST00000497564 KIF14Q15058 1648 aa21.9■■□□□ 1.1
VPS26A-209ENST00000497564 TRIM26Q12899 539 aaPredicted RBP21.89■■□□□ 1.09
VPS26A-209ENST00000497564 NEO1Q92859 1461 aa21.88■■□□□ 1.09
VPS26A-209ENST00000497564 TROQ12816 1431 aaPredicted RBP21.87■■□□□ 1.09
VPS26A-209ENST00000497564 MTUS2Q5JR59 1369 aa21.86■■□□□ 1.09
VPS26A-209ENST00000497564 KDM4FA0A1W2PPD8 638 aa21.85■■□□□ 1.09
VPS26A-209ENST00000497564 RAPGEF3O95398 923 aa21.85■■□□□ 1.09
VPS26A-209ENST00000497564 CDK11AQ9UQ88 783 aaPredicted RBP21.85■■□□□ 1.09
VPS26A-209ENST00000497564 FANCAO15360 1455 aa21.84■■□□□ 1.09
VPS26A-209ENST00000497564 PHLDB1Q86UU1 1377 aa21.83■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms