RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 ARAP1Q96P48 1450 aa18.1■□□□□ 0.49
VEGFA-215ENST00000497139 WDR97A6NE52 1622 aa18.09■□□□□ 0.49
VEGFA-215ENST00000497139 TRIM52Q96A61 297 aa18.07■□□□□ 0.48
VEGFA-215ENST00000497139 RAB3GAP2Q9H2M9 1393 aa18.04■□□□□ 0.48
VEGFA-215ENST00000497139 PPP4R2Q9NY27 417 aa18.03■□□□□ 0.48
VEGFA-215ENST00000497139 NOP58Q9Y2X3 529 aaKnown RBP18.01■□□□□ 0.47
VEGFA-215ENST00000497139 HMGXB3Q12766 1538 aa18■□□□□ 0.47
VEGFA-215ENST00000497139 KANK4Q5T7N3 995 aaPredicted RBP17.99■□□□□ 0.47
VEGFA-215ENST00000497139 ANO8Q9HCE9 1232 aaPredicted RBP17.99■□□□□ 0.47
VEGFA-215ENST00000497139 SETD5Q9C0A6 1442 aa17.98■□□□□ 0.47
VEGFA-215ENST00000497139 NCAPD3P42695 1498 aa17.97■□□□□ 0.47
VEGFA-215ENST00000497139 PRXQ9BXM0 1461 aa17.96■□□□□ 0.47
VEGFA-215ENST00000497139 MAP3K1Q13233 1512 aa17.95■□□□□ 0.46
VEGFA-215ENST00000497139 TOP2BQ02880 1626 aa17.93■□□□□ 0.46
VEGFA-215ENST00000497139 BIVM-ERCC5R4GMW8 1640 aa17.89■□□□□ 0.45
VEGFA-215ENST00000497139 RTL5Q5HYW3 569 aaPredicted RBP17.88■□□□□ 0.45
VEGFA-215ENST00000497139 HNRNPUQ00839 825 aaKnown RBP eCLIP17.87■□□□□ 0.458e-7■□□□□ 10.9
VEGFA-215ENST00000497139 UBE2Q2Q8WVN8 375 aa17.85■□□□□ 0.45
VEGFA-215ENST00000497139 SALL2Q9Y467 1007 aaPredicted RBP17.85■□□□□ 0.45
VEGFA-215ENST00000497139 NBR1Q14596 966 aa17.82■□□□□ 0.44
VEGFA-215ENST00000497139 TIAM1Q13009 1591 aa17.81■□□□□ 0.44
VEGFA-215ENST00000497139 IRX6P78412 446 aaPredicted RBP17.8■□□□□ 0.44
VEGFA-215ENST00000497139 IPO9Q96P70 1041 aaKnown RBP17.8■□□□□ 0.44
VEGFA-215ENST00000497139 ANP32AP39687 249 aaKnown RBP17.8■□□□□ 0.44
VEGFA-215ENST00000497139 SIN3AQ96ST3 1273 aa17.79■□□□□ 0.44
VEGFA-215ENST00000497139 PAK3O75914 559 aaPredicted RBP17.79■□□□□ 0.44
VEGFA-215ENST00000497139 RANGAP1P46060 587 aaPredicted RBP17.78■□□□□ 0.44
VEGFA-215ENST00000497139 ARHGAP35Q9NRY4 1499 aa17.78■□□□□ 0.44
VEGFA-215ENST00000497139 FHAD1B1AJZ9 1412 aa17.78■□□□□ 0.44
VEGFA-215ENST00000497139 CFTRP13569 1480 aa17.77■□□□□ 0.44
VEGFA-215ENST00000497139 WASHC2AQ641Q2 1341 aa17.76■□□□□ 0.43
VEGFA-215ENST00000497139 USP35Q9P2H5 1018 aa17.75■□□□□ 0.43
VEGFA-215ENST00000497139 C11orf95C9JLR9 678 aaPredicted RBP17.74■□□□□ 0.43
VEGFA-215ENST00000497139 ZBTB47Q9UFB7 747 aaPredicted RBP17.73■□□□□ 0.43
VEGFA-215ENST00000497139 CUX1P39880 1505 aa17.73■□□□□ 0.43
VEGFA-215ENST00000497139 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.73■□□□□ 0.436e-8■□□□□ 11.3
VEGFA-215ENST00000497139 ZBED9Q6R2W3 1325 aa17.72■□□□□ 0.43
VEGFA-215ENST00000497139 TONSLQ96HA7 1378 aa17.71■□□□□ 0.43
VEGFA-215ENST00000497139 LRRC9Q6ZRR7 1453 aa17.71■□□□□ 0.43
VEGFA-215ENST00000497139 B4GALNT3Q6L9W6 998 aa17.71■□□□□ 0.43
VEGFA-215ENST00000497139 PRDM2Q13029 1718 aa17.7■□□□□ 0.42
VEGFA-215ENST00000497139 CC2D2AQ9P2K1 1620 aa17.69■□□□□ 0.42
VEGFA-215ENST00000497139 NCOA2Q15596 1464 aa17.69■□□□□ 0.42
VEGFA-215ENST00000497139 CFAP43Q8NDM7 1665 aa17.68■□□□□ 0.42
VEGFA-215ENST00000497139 IL27Q8NEV9 243 aa17.68■□□□□ 0.42
VEGFA-215ENST00000497139 HIRIP3Q9BW71 556 aaPredicted RBP17.68■□□□□ 0.42
VEGFA-215ENST00000497139 CCDC136Q96JN2 1154 aa17.66■□□□□ 0.42
VEGFA-215ENST00000497139 WASHC2CQ9Y4E1 1318 aa17.66■□□□□ 0.42
VEGFA-215ENST00000497139 KIF27Q86VH2 1401 aa17.64■□□□□ 0.41
VEGFA-215ENST00000497139 PHLDB1Q86UU1 1377 aa17.64■□□□□ 0.41
VEGFA-215ENST00000497139 CNTLNQ9NXG0 1405 aa17.63■□□□□ 0.41
VEGFA-215ENST00000497139 SMG6Q86US8 1419 aaKnown RBP17.61■□□□□ 0.41
VEGFA-215ENST00000497139 RNF123Q5XPI4 1314 aa17.6■□□□□ 0.41
VEGFA-215ENST00000497139 KDM5BQ9UGL1 1544 aa17.59■□□□□ 0.41
VEGFA-215ENST00000497139 UACAQ9BZF9 1416 aa17.59■□□□□ 0.41
VEGFA-215ENST00000497139 PPM1GO15355 546 aaPredicted RBP17.56■□□□□ 0.4
VEGFA-215ENST00000497139 CADPSQ9ULU8 1353 aa17.56■□□□□ 0.4
VEGFA-215ENST00000497139 FAM50AQ14320 339 aaKnown RBP17.55■□□□□ 0.4
VEGFA-215ENST00000497139 CCDC18Q5T9S5 1454 aa17.54■□□□□ 0.4
VEGFA-215ENST00000497139 PRKRIP1Q9H875 184 aaPredicted RBP17.51■□□□□ 0.39
VEGFA-215ENST00000497139 RTN4Q9NQC3 1192 aaKnown RBP17.51■□□□□ 0.39
VEGFA-215ENST00000497139 HFM1A2PYH4 1435 aa17.51■□□□□ 0.39
VEGFA-215ENST00000497139 ABCA5Q8WWZ7 1642 aa17.5■□□□□ 0.39
VEGFA-215ENST00000497139 NEFMP07197 916 aa17.5■□□□□ 0.39
VEGFA-215ENST00000497139 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.5■□□□□ 0.39
VEGFA-215ENST00000497139 PTPN23Q9H3S7 1636 aa17.49■□□□□ 0.39
VEGFA-215ENST00000497139 POLR1AO95602 1720 aaPredicted RBP17.48■□□□□ 0.39
VEGFA-215ENST00000497139 MRS2Q9HD23 443 aa17.48■□□□□ 0.39
VEGFA-215ENST00000497139 NCOA1Q15788 1441 aa17.47■□□□□ 0.39
VEGFA-215ENST00000497139 NUDCQ9Y266 331 aa17.47■□□□□ 0.39
VEGFA-215ENST00000497139 HSPA5P11021 654 aaKnown RBP17.47■□□□□ 0.39
VEGFA-215ENST00000497139 DNAJC5BQ9UF47 199 aa17.47■□□□□ 0.39
VEGFA-215ENST00000497139 TCERG1O14776 1098 aaKnown RBP17.46■□□□□ 0.39
VEGFA-215ENST00000497139 EIF4G2P78344 907 aaKnown RBP eCLIP17.46■□□□□ 0.39
VEGFA-215ENST00000497139 PCF11O94913 1555 aaKnown RBP17.45■□□□□ 0.38
VEGFA-215ENST00000497139 FAM9BQ8IZU0 186 aa17.45■□□□□ 0.38
VEGFA-215ENST00000497139 CCDC184Q52MB2 194 aa17.44■□□□□ 0.38
VEGFA-215ENST00000497139 FYCO1Q9BQS8 1478 aa17.44■□□□□ 0.38
VEGFA-215ENST00000497139 RSPH6AQ9H0K4 717 aa17.43■□□□□ 0.38
VEGFA-215ENST00000497139 MS4A1P11836 297 aa17.43■□□□□ 0.38
VEGFA-215ENST00000497139 CCDC7Q96M83 1385 aa17.43■□□□□ 0.38
VEGFA-215ENST00000497139 AKNAQ7Z591 1439 aa17.43■□□□□ 0.38
VEGFA-215ENST00000497139 FGD5Q6ZNL6 1462 aa17.42■□□□□ 0.38
VEGFA-215ENST00000497139 AQRO60306 1485 aaKnown RBP eCLIP17.42■□□□□ 0.383e-11■■■■■ 27.8
VEGFA-215ENST00000497139 IGF1RP08069 1367 aa17.42■□□□□ 0.38
VEGFA-215ENST00000497139 FGD6Q6ZV73 1430 aa17.41■□□□□ 0.38
VEGFA-215ENST00000497139 GSE1Q14687 1217 aa17.41■□□□□ 0.38
VEGFA-215ENST00000497139 DDRGK1Q96HY6 314 aa17.4■□□□□ 0.38
VEGFA-215ENST00000497139 HECW1Q76N89 1606 aa17.38■□□□□ 0.37
VEGFA-215ENST00000497139 FMN1Q68DA7 1419 aa17.38■□□□□ 0.37
VEGFA-215ENST00000497139 FANCD2Q9BXW9 1451 aa17.38■□□□□ 0.37
VEGFA-215ENST00000497139 NAIPQ13075 1403 aa17.36■□□□□ 0.37
VEGFA-215ENST00000497139 LAS1LQ9Y4W2 734 aaKnown RBP17.35■□□□□ 0.37
VEGFA-215ENST00000497139 CASKIN1Q8WXD9 1431 aa17.35■□□□□ 0.37
VEGFA-215ENST00000497139 EFCAB5A4FU69 1503 aa17.35■□□□□ 0.37
VEGFA-215ENST00000497139 BACH2Q9BYV9 841 aa17.34■□□□□ 0.37
VEGFA-215ENST00000497139 DNMBPQ6XZF7 1577 aa17.34■□□□□ 0.37
VEGFA-215ENST00000497139 CARMIL1Q5VZK9 1371 aa17.34■□□□□ 0.37
VEGFA-215ENST00000497139 PDE4AP27815 886 aa17.34■□□□□ 0.37
VEGFA-215ENST00000497139 FAM43AQ8N2R8 423 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms