RNA–Protein interactions for RNA: ENST00000495122.1

CBX4-204, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 490 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-204ENST00000495122 PRG4Q92954 1404 aaPredicted RBP26.49■■□□□ 1.83
CBX4-204ENST00000495122 IGF1RP08069 1367 aa26.49■■□□□ 1.83
CBX4-204ENST00000495122 KIF13AQ9H1H9 1805 aa26.46■■□□□ 1.83
CBX4-204ENST00000495122 KIAA0586Q9BVV6 1533 aa26.42■■□□□ 1.82
CBX4-204ENST00000495122 JPH4Q96JJ6 628 aa26.41■■□□□ 1.82
CBX4-204ENST00000495122 EEA1Q15075 1411 aa26.35■■□□□ 1.81
CBX4-204ENST00000495122 ADCY10Q96PN6 1610 aa26.35■■□□□ 1.81
CBX4-204ENST00000495122 CARMIL1Q5VZK9 1371 aa26.33■■□□□ 1.8
CBX4-204ENST00000495122 IQGAP2Q13576 1575 aa26.31■■□□□ 1.8
CBX4-204ENST00000495122 CTTNBP2Q8WZ74 1663 aa26.26■■□□□ 1.79
CBX4-204ENST00000495122 MAPKBP1O60336 1514 aa26.24■■□□□ 1.79
CBX4-204ENST00000495122 LOC105371045A0A1W2PR82 267 aa26.2■■□□□ 1.78
CBX4-204ENST00000495122 RAPGEF2Q9Y4G8 1499 aa26.18■■□□□ 1.78
CBX4-204ENST00000495122 DIP2BQ9P265 1576 aa26.18■■□□□ 1.78
CBX4-204ENST00000495122 UGGT2Q9NYU1 1516 aa26.12■■□□□ 1.77
CBX4-204ENST00000495122 CARMIL2Q6F5E8 1435 aa26.12■■□□□ 1.77
CBX4-204ENST00000495122 ABCC10Q5T3U5 1492 aa26.11■■□□□ 1.77
CBX4-204ENST00000495122 DISP1Q96F81 1524 aa26.1■■□□□ 1.77
CBX4-204ENST00000495122 KIAA0556O60303 1618 aa26.09■■□□□ 1.77
CBX4-204ENST00000495122 TSPOAP1O95153 1857 aa26.08■■□□□ 1.77
CBX4-204ENST00000495122 FAM9AQ8IZU1 332 aaPredicted RBP26.07■■□□□ 1.76
CBX4-204ENST00000495122 TNIKQ9UKE5 1360 aa26.07■■□□□ 1.76
CBX4-204ENST00000495122 PTPRGP23470 1445 aa26.06■■□□□ 1.76
CBX4-204ENST00000495122 NPM1P06748 294 aaKnown RBP eCLIP26.02■■□□□ 1.76
CBX4-204ENST00000495122 ABCC2Q92887 1545 aa26.01■■□□□ 1.75
CBX4-204ENST00000495122 UHRF1BP1LA0JNW5 1464 aa25.99■■□□□ 1.75
CBX4-204ENST00000495122 PRXQ9BXM0 1461 aa25.98■■□□□ 1.75
CBX4-204ENST00000495122 ZCCHC11Q5TAX3 1644 aaKnown RBP25.96■■□□□ 1.75
CBX4-204ENST00000495122 CSRNP3Q8WYN3 585 aa25.94■■□□□ 1.74
CBX4-204ENST00000495122 PPRC1Q5VV67 1664 aaKnown RBP25.93■■□□□ 1.74
CBX4-204ENST00000495122 UACAQ9BZF9 1416 aa25.92■■□□□ 1.74
CBX4-204ENST00000495122 FAM69CQ0P6D2 419 aa25.92■■□□□ 1.74
CBX4-204ENST00000495122 KIF21BO75037 1637 aa25.92■■□□□ 1.74
CBX4-204ENST00000495122 TTBK1Q5TCY1 1321 aaPredicted RBP25.9■■□□□ 1.74
CBX4-204ENST00000495122 GLI2P10070 1586 aa25.89■■□□□ 1.73
CBX4-204ENST00000495122 GOLGA3Q08378 1498 aa25.88■■□□□ 1.73
CBX4-204ENST00000495122 KDM6BO15054 1643 aa25.88■■□□□ 1.73
CBX4-204ENST00000495122 KDM5BQ9UGL1 1544 aa25.88■■□□□ 1.73
CBX4-204ENST00000495122 ASXL2Q76L83 1435 aa25.85■■□□□ 1.73
CBX4-204ENST00000495122 PLB1Q6P1J6 1458 aa25.85■■□□□ 1.73
CBX4-204ENST00000495122 MAP3K4Q9Y6R4 1608 aa25.83■■□□□ 1.73
CBX4-204ENST00000495122 ABCA8O94911 1581 aa25.82■■□□□ 1.72
CBX4-204ENST00000495122 SAMD9Q5K651 1589 aa25.77■■□□□ 1.72
CBX4-204ENST00000495122 EPRSP07814 1512 aaKnown RBP25.74■■□□□ 1.71
CBX4-204ENST00000495122 AEBP2Q6ZN18 517 aaPredicted RBP25.73■■□□□ 1.71
CBX4-204ENST00000495122 CFAP43Q8NDM7 1665 aa25.69■■□□□ 1.7
CBX4-204ENST00000495122 WDR7Q9Y4E6 1490 aa25.67■■□□□ 1.7
CBX4-204ENST00000495122 CEP162Q5TB80 1403 aa25.65■■□□□ 1.7
CBX4-204ENST00000495122 RAPGEF6Q8TEU7 1601 aa25.61■■□□□ 1.69
CBX4-204ENST00000495122 TEX14Q8IWB6 1497 aa25.59■■□□□ 1.69
CBX4-204ENST00000495122 UBTFP17480 764 aaKnown RBP25.55■■□□□ 1.68
CBX4-204ENST00000495122 EHMT2Q96KQ7 1210 aa25.52■■□□□ 1.68
CBX4-204ENST00000495122 TRIM26Q12899 539 aaPredicted RBP25.51■■□□□ 1.67
CBX4-204ENST00000495122 COL17A1Q9UMD9 1497 aaPredicted RBP25.49■■□□□ 1.67
CBX4-204ENST00000495122 EFCAB5A4FU69 1503 aa25.48■■□□□ 1.67
CBX4-204ENST00000495122 MAGI3Q5TCQ9 1506 aa25.48■■□□□ 1.67
CBX4-204ENST00000495122 ATP10BO94823 1461 aa25.48■■□□□ 1.67
CBX4-204ENST00000495122 P3H3Q8IVL6 736 aa25.48■■□□□ 1.67
CBX4-204ENST00000495122 ABCA9Q8IUA7 1624 aa25.48■■□□□ 1.67
CBX4-204ENST00000495122 FHOD3Q2V2M9 1422 aa25.42■■□□□ 1.66
CBX4-204ENST00000495122 CD109Q6YHK3 1445 aa25.42■■□□□ 1.66
CBX4-204ENST00000495122 NUP153P49790 1475 aaKnown RBP25.4■■□□□ 1.66
CBX4-204ENST00000495122 CLIP1P30622 1438 aa25.4■■□□□ 1.66
CBX4-204ENST00000495122 PCGF6Q9BYE7 350 aa25.38■■□□□ 1.65
CBX4-204ENST00000495122 KCNH8Q96L42 1107 aa25.36■■□□□ 1.65
CBX4-204ENST00000495122 ARID3CA6NKF2 412 aa25.34■■□□□ 1.65
CBX4-204ENST00000495122 KDM4FA0A1W2PPD8 638 aa25.33■■□□□ 1.65
CBX4-204ENST00000495122 ADGRL1O94910 1474 aa25.3■■□□□ 1.64
CBX4-204ENST00000495122 RANGAP1P46060 587 aaPredicted RBP25.3■■□□□ 1.64
CBX4-204ENST00000495122 ARAP3Q8WWN8 1544 aa25.28■■□□□ 1.64
CBX4-204ENST00000495122 VPS8Q8N3P4 1428 aa25.28■■□□□ 1.64
CBX4-204ENST00000495122 LRRIQ1Q96JM4 1722 aa25.26■■□□□ 1.63
CBX4-204ENST00000495122 HECW1Q76N89 1606 aa25.23■■□□□ 1.63
CBX4-204ENST00000495122 CFAP74Q9C0B2 1584 aa25.22■■□□□ 1.63
CBX4-204ENST00000495122 ARHGAP35Q9NRY4 1499 aa25.21■■□□□ 1.63
CBX4-204ENST00000495122 FRMPD1Q5SYB0 1578 aa25.21■■□□□ 1.63
CBX4-204ENST00000495122 TTC37Q6PGP7 1564 aa25.21■■□□□ 1.63
CBX4-204ENST00000495122 CDK13Q14004 1512 aaKnown RBP25.2■■□□□ 1.62
CBX4-204ENST00000495122 NEO1Q92859 1461 aa25.2■■□□□ 1.62
CBX4-204ENST00000495122 RICTORQ6R327 1708 aa25.2■■□□□ 1.62
CBX4-204ENST00000495122 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.19■■□□□ 1.621e-6■□□□□ 10.3
CBX4-204ENST00000495122 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.17■■□□□ 1.62
CBX4-204ENST00000495122 HNRNPUL2Q1KMD3 747 aaKnown RBP25.17■■□□□ 1.62
CBX4-204ENST00000495122 PHLDB1Q86UU1 1377 aa25.16■■□□□ 1.62
CBX4-204ENST00000495122 MYO5CQ9NQX4 1742 aa25.15■■□□□ 1.62
CBX4-204ENST00000495122 FMN1Q68DA7 1419 aa25.13■■□□□ 1.61
CBX4-204ENST00000495122 PLEKHD1A6NEE1 506 aa25.07■■□□□ 1.6
CBX4-204ENST00000495122 HRCP23327 699 aa25.07■■□□□ 1.6
CBX4-204ENST00000495122 KIF14Q15058 1648 aa25.06■■□□□ 1.6
CBX4-204ENST00000495122 PCF11O94913 1555 aaKnown RBP25.05■■□□□ 1.6
CBX4-204ENST00000495122 ARHGEF40Q8TER5 1519 aa25.05■■□□□ 1.6
CBX4-204ENST00000495122 ADAMTSL3P82987 1691 aa25.04■■□□□ 1.6
CBX4-204ENST00000495122 FANCAO15360 1455 aa25.04■■□□□ 1.6
CBX4-204ENST00000495122 BCORL1Q5H9F3 1711 aa25.03■■□□□ 1.6
CBX4-204ENST00000495122 ZMYM4Q5VZL5 1548 aa25.01■■□□□ 1.59
CBX4-204ENST00000495122 AKNAQ7Z591 1439 aa25■■□□□ 1.59
CBX4-204ENST00000495122 APLP2Q06481 763 aa24.98■■□□□ 1.59
CBX4-204ENST00000495122 DENND4BO75064 1496 aaPredicted RBP24.97■■□□□ 1.59
CBX4-204ENST00000495122 RAPGEF3O95398 923 aa24.97■■□□□ 1.59
CBX4-204ENST00000495122 CDC42BPBQ9Y5S2 1711 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms