RNA–Protein interactions for RNA: ENST00000494582.1

LINC00488-201, long intergenic non-protein coding RNA 488, humanhuman

TSL 1 (best) BASIC

Gene LINC00488, Length 2,520 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00488-201ENST00000494582 SYNJ1O43426 1573 aa14.18□□□□□ -0.14
LINC00488-201ENST00000494582 RAB3GAP2Q9H2M9 1393 aa14.16□□□□□ -0.14
LINC00488-201ENST00000494582 ANP32CO43423 234 aa14.16□□□□□ -0.14
LINC00488-201ENST00000494582 IL27Q8NEV9 243 aa14.16□□□□□ -0.14
LINC00488-201ENST00000494582 ARAP1Q96P48 1450 aa14.15□□□□□ -0.14
LINC00488-201ENST00000494582 NOP58Q9Y2X3 529 aaKnown RBP14.15□□□□□ -0.14
LINC00488-201ENST00000494582 CCNB3Q8WWL7 1395 aa14.12□□□□□ -0.15
LINC00488-201ENST00000494582 HNRNPUQ00839 825 aaKnown RBP eCLIP14.11□□□□□ -0.15
LINC00488-201ENST00000494582 ERICH6BQ5W0A0 696 aa14.11□□□□□ -0.15
LINC00488-201ENST00000494582 RTN4Q9NQC3 1192 aaKnown RBP14.11□□□□□ -0.15
LINC00488-201ENST00000494582 SMARCA4P51532 1647 aa14.1□□□□□ -0.15
LINC00488-201ENST00000494582 B4GALNT3Q6L9W6 998 aa14.1□□□□□ -0.15
LINC00488-201ENST00000494582 PPP4R2Q9NY27 417 aa14.09□□□□□ -0.15
LINC00488-201ENST00000494582 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.09□□□□□ -0.15
LINC00488-201ENST00000494582 UBE2Q2Q8WVN8 375 aa14□□□□□ -0.17
LINC00488-201ENST00000494582 SETD5Q9C0A6 1442 aa14□□□□□ -0.17
LINC00488-201ENST00000494582 CCDC184Q52MB2 194 aa13.98□□□□□ -0.17
LINC00488-201ENST00000494582 IPO9Q96P70 1041 aaKnown RBP13.95□□□□□ -0.18
LINC00488-201ENST00000494582 RTL5Q5HYW3 569 aaPredicted RBP13.95□□□□□ -0.18
LINC00488-201ENST00000494582 WASHC2AQ641Q2 1341 aa13.93□□□□□ -0.18
LINC00488-201ENST00000494582 PRXQ9BXM0 1461 aa13.93□□□□□ -0.18
LINC00488-201ENST00000494582 TIMELESSQ9UNS1 1208 aa13.92□□□□□ -0.18
LINC00488-201ENST00000494582 ERICH3Q5RHP9 1530 aa13.91□□□□□ -0.18
LINC00488-201ENST00000494582 ZBTB47Q9UFB7 747 aaPredicted RBP13.9□□□□□ -0.18
LINC00488-201ENST00000494582 ARHGAP35Q9NRY4 1499 aa13.89□□□□□ -0.19
LINC00488-201ENST00000494582 ANP32AP39687 249 aaKnown RBP13.88□□□□□ -0.19
LINC00488-201ENST00000494582 PHLDB1Q86UU1 1377 aa13.88□□□□□ -0.19
LINC00488-201ENST00000494582 FAM50AQ14320 339 aaKnown RBP13.85□□□□□ -0.19
LINC00488-201ENST00000494582 FAM9BQ8IZU0 186 aa13.84□□□□□ -0.19
LINC00488-201ENST00000494582 BRPF3Q9ULD4 1205 aa13.84□□□□□ -0.19
LINC00488-201ENST00000494582 LAS1LQ9Y4W2 734 aaKnown RBP13.84□□□□□ -0.19
LINC00488-201ENST00000494582 WASHC2CQ9Y4E1 1318 aa13.83□□□□□ -0.2
LINC00488-201ENST00000494582 AKNAQ7Z591 1439 aa13.83□□□□□ -0.2
LINC00488-201ENST00000494582 TONSLQ96HA7 1378 aa13.82□□□□□ -0.2
LINC00488-201ENST00000494582 C11orf95C9JLR9 678 aaPredicted RBP13.82□□□□□ -0.2
LINC00488-201ENST00000494582 TOP2BQ02880 1626 aa13.82□□□□□ -0.2
LINC00488-201ENST00000494582 NCAPD3P42695 1498 aa13.82□□□□□ -0.2
LINC00488-201ENST00000494582 TIAM1Q13009 1591 aa13.82□□□□□ -0.2
LINC00488-201ENST00000494582 ZBED9Q6R2W3 1325 aa13.81□□□□□ -0.2
LINC00488-201ENST00000494582 KDM5BQ9UGL1 1544 aa13.81□□□□□ -0.2
LINC00488-201ENST00000494582 NEFMP07197 916 aa13.81□□□□□ -0.2
LINC00488-201ENST00000494582 PEG3Q9GZU2 1588 aa13.8□□□□□ -0.2
LINC00488-201ENST00000494582 LRRC9Q6ZRR7 1453 aa13.78□□□□□ -0.2
LINC00488-201ENST00000494582 FHAD1B1AJZ9 1412 aa13.78□□□□□ -0.2
LINC00488-201ENST00000494582 NPM2Q86SE8 214 aaKnown RBP13.78□□□□□ -0.2
LINC00488-201ENST00000494582 HSPA5P11021 654 aaKnown RBP13.77□□□□□ -0.21
LINC00488-201ENST00000494582 EIF5BO60841 1220 aaKnown RBP13.76□□□□□ -0.21
LINC00488-201ENST00000494582 PRKRIP1Q9H875 184 aaPredicted RBP13.75□□□□□ -0.21
LINC00488-201ENST00000494582 MRS2Q9HD23 443 aa13.75□□□□□ -0.21
LINC00488-201ENST00000494582 NCOA2Q15596 1464 aa13.74□□□□□ -0.21
LINC00488-201ENST00000494582 CNTLNQ9NXG0 1405 aa13.74□□□□□ -0.21
LINC00488-201ENST00000494582 RNF123Q5XPI4 1314 aa13.73□□□□□ -0.21
LINC00488-201ENST00000494582 BIVM-ERCC5R4GMW8 1640 aa13.73□□□□□ -0.21
LINC00488-201ENST00000494582 MAP3K1Q13233 1512 aa13.72□□□□□ -0.21
LINC00488-201ENST00000494582 SENP3-EIF4A1A0A087X0R7 540 aa13.72□□□□□ -0.21
LINC00488-201ENST00000494582 USP35Q9P2H5 1018 aa13.71□□□□□ -0.21
LINC00488-201ENST00000494582 SMG6Q86US8 1419 aaKnown RBP13.71□□□□□ -0.21
LINC00488-201ENST00000494582 UNC13AQ9UPW8 1703 aa13.7□□□□□ -0.22
LINC00488-201ENST00000494582 AQRO60306 1485 aaKnown RBP eCLIP13.69□□□□□ -0.22
LINC00488-201ENST00000494582 CCDC18Q5T9S5 1454 aa13.67□□□□□ -0.22
LINC00488-201ENST00000494582 NUDCQ9Y266 331 aa13.66□□□□□ -0.22
LINC00488-201ENST00000494582 GSE1Q14687 1217 aa13.65□□□□□ -0.22
LINC00488-201ENST00000494582 PTPRKQ15262 1439 aa13.65□□□□□ -0.22
LINC00488-201ENST00000494582 PDE4AP27815 886 aa13.65□□□□□ -0.22
LINC00488-201ENST00000494582 UACAQ9BZF9 1416 aa13.64□□□□□ -0.23
LINC00488-201ENST00000494582 CCDC7Q96M83 1385 aa13.64□□□□□ -0.23
LINC00488-201ENST00000494582 FRAT1Q92837 279 aaPredicted RBP13.64□□□□□ -0.23
LINC00488-201ENST00000494582 KIF27Q86VH2 1401 aa13.63□□□□□ -0.23
LINC00488-201ENST00000494582 PKNOX2Q96KN3 472 aa13.63□□□□□ -0.23
LINC00488-201ENST00000494582 NCOA1Q15788 1441 aa13.63□□□□□ -0.23
LINC00488-201ENST00000494582 CFAP43Q8NDM7 1665 aa13.63□□□□□ -0.23
LINC00488-201ENST00000494582 PPM1GO15355 546 aaPredicted RBP13.62□□□□□ -0.23
LINC00488-201ENST00000494582 BACH2Q9BYV9 841 aa13.62□□□□□ -0.23
LINC00488-201ENST00000494582 EIF4G2P78344 907 aaKnown RBP eCLIP13.62□□□□□ -0.23
LINC00488-201ENST00000494582 CUX1P39880 1505 aa13.62□□□□□ -0.23
LINC00488-201ENST00000494582 PCF11O94913 1555 aaKnown RBP13.6□□□□□ -0.23
LINC00488-201ENST00000494582 NFKBIBQ15653 356 aa13.6□□□□□ -0.23
LINC00488-201ENST00000494582 SKAP1Q86WV1 359 aa13.6□□□□□ -0.23
LINC00488-201ENST00000494582 PTPN23Q9H3S7 1636 aa13.6□□□□□ -0.23
LINC00488-201ENST00000494582 CNGB1Q14028 1251 aaPredicted RBP13.59□□□□□ -0.23
LINC00488-201ENST00000494582 PABPN1Q86U42 306 aaKnown RBP eCLIP13.59□□□□□ -0.23
LINC00488-201ENST00000494582 EXOC6Q8TAG9 804 aa13.59□□□□□ -0.23
LINC00488-201ENST00000494582 HFM1A2PYH4 1435 aa13.59□□□□□ -0.23
LINC00488-201ENST00000494582 ATAD2BQ9ULI0 1458 aa13.58□□□□□ -0.23
LINC00488-201ENST00000494582 P3H3Q8IVL6 736 aa13.58□□□□□ -0.23
LINC00488-201ENST00000494582 ATP1B4Q9UN42 357 aaPredicted RBP13.58□□□□□ -0.23
LINC00488-201ENST00000494582 TCERG1O14776 1098 aaKnown RBP13.58□□□□□ -0.24
LINC00488-201ENST00000494582 SLC4A3P48751 1232 aa13.58□□□□□ -0.24
LINC00488-201ENST00000494582 DCAF11Q8TEB1 546 aa13.58□□□□□ -0.24
LINC00488-201ENST00000494582 DENND4BO75064 1496 aaPredicted RBP13.57□□□□□ -0.24
LINC00488-201ENST00000494582 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.57□□□□□ -0.24
LINC00488-201ENST00000494582 NAIPQ13075 1403 aa13.56□□□□□ -0.24
LINC00488-201ENST00000494582 KIF7Q2M1P5 1343 aa13.56□□□□□ -0.24
LINC00488-201ENST00000494582 FGD6Q6ZV73 1430 aa13.55□□□□□ -0.24
LINC00488-201ENST00000494582 RSPH6AQ9H0K4 717 aa13.55□□□□□ -0.24
LINC00488-201ENST00000494582 L3MBTL2Q969R5 705 aa13.52□□□□□ -0.24
LINC00488-201ENST00000494582 IGF1RP08069 1367 aa13.51□□□□□ -0.25
LINC00488-201ENST00000494582 DHX29Q7Z478 1369 aaKnown RBP13.51□□□□□ -0.25
LINC00488-201ENST00000494582 RRP1P56182 461 aaKnown RBP13.51□□□□□ -0.25
LINC00488-201ENST00000494582 NBPF8Q3BBV2 869 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms