RNA–Protein interactions for RNA: ENST00000494327.1

HPS3-207, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 3

Gene HPS3, Length 556 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-207ENST00000494327 SHROOM2Q13796 1616 aa37.08■■■■□ 3.53
HPS3-207ENST00000494327 PRG4Q92954 1404 aaPredicted RBP37.05■■■■□ 3.52
HPS3-207ENST00000494327 KIAA0586Q9BVV6 1533 aa37.01■■■■□ 3.52
HPS3-207ENST00000494327 RAPGEF2Q9Y4G8 1499 aa36.94■■■■□ 3.5
HPS3-207ENST00000494327 TRHP20396 242 aaPredicted RBP36.87■■■■□ 3.49
HPS3-207ENST00000494327 IQGAP2Q13576 1575 aa36.74■■■■□ 3.47
HPS3-207ENST00000494327 CHIC1Q5VXU3 224 aa36.74■■■■□ 3.47
HPS3-207ENST00000494327 CSRNP3Q8WYN3 585 aa36.73■■■■□ 3.47
HPS3-207ENST00000494327 PRXQ9BXM0 1461 aa36.71■■■■□ 3.47
HPS3-207ENST00000494327 TTBK1Q5TCY1 1321 aaPredicted RBP36.7■■■■□ 3.47
HPS3-207ENST00000494327 FAM9AQ8IZU1 332 aaPredicted RBP36.68■■■■□ 3.46
HPS3-207ENST00000494327 CARMIL2Q6F5E8 1435 aa36.66■■■■□ 3.46
HPS3-207ENST00000494327 EEA1Q15075 1411 aa36.6■■■■□ 3.45
HPS3-207ENST00000494327 PTPRGP23470 1445 aa36.59■■■■□ 3.45
HPS3-207ENST00000494327 TNIKQ9UKE5 1360 aa36.56■■■■□ 3.44
HPS3-207ENST00000494327 NPM1P06748 294 aaKnown RBP eCLIP36.53■■■■□ 3.44
HPS3-207ENST00000494327 DISP1Q96F81 1524 aa36.53■■■■□ 3.44
HPS3-207ENST00000494327 UGGT2Q9NYU1 1516 aa36.52■■■■□ 3.44
HPS3-207ENST00000494327 CTTNBP2Q8WZ74 1663 aa36.5■■■■□ 3.43
HPS3-207ENST00000494327 ADCY10Q96PN6 1610 aa36.45■■■■□ 3.42
HPS3-207ENST00000494327 KIAA0556O60303 1618 aa36.39■■■■□ 3.42
HPS3-207ENST00000494327 GOLGA3Q08378 1498 aa36.34■■■■□ 3.41
HPS3-207ENST00000494327 UACAQ9BZF9 1416 aa36.31■■■■□ 3.4
HPS3-207ENST00000494327 EHMT2Q96KQ7 1210 aa36.3■■■■□ 3.4
HPS3-207ENST00000494327 P3H3Q8IVL6 736 aa36.27■■■■□ 3.4
HPS3-207ENST00000494327 RANGAP1P46060 587 aaPredicted RBP36.26■■■■□ 3.4
HPS3-207ENST00000494327 MAPKBP1O60336 1514 aa36.24■■■■□ 3.39
HPS3-207ENST00000494327 ABCC2Q92887 1545 aa36.23■■■■□ 3.39
HPS3-207ENST00000494327 UHRF1BP1LA0JNW5 1464 aa36.22■■■■□ 3.39
HPS3-207ENST00000494327 KIF21BO75037 1637 aa36.21■■■■□ 3.39
HPS3-207ENST00000494327 FAM69CQ0P6D2 419 aa36.21■■■■□ 3.39
HPS3-207ENST00000494327 ABCC10Q5T3U5 1492 aa36.16■■■■□ 3.38
HPS3-207ENST00000494327 UBTFP17480 764 aaKnown RBP36.14■■■■□ 3.38
HPS3-207ENST00000494327 PLB1Q6P1J6 1458 aa36.13■■■■□ 3.37
HPS3-207ENST00000494327 KIF13AQ9H1H9 1805 aa36.11■■■■□ 3.37
HPS3-207ENST00000494327 ASXL2Q76L83 1435 aa36.07■■■■□ 3.36
HPS3-207ENST00000494327 KDM5BQ9UGL1 1544 aa36.06■■■■□ 3.36
HPS3-207ENST00000494327 DIP2BQ9P265 1576 aa36.05■■■■□ 3.36
HPS3-207ENST00000494327 SAMD9Q5K651 1589 aa36.03■■■■□ 3.36
HPS3-207ENST00000494327 ABCA8O94911 1581 aa36.01■■■■□ 3.35
HPS3-207ENST00000494327 ZCCHC11Q5TAX3 1644 aaKnown RBP35.98■■■■□ 3.35
HPS3-207ENST00000494327 ARID3CA6NKF2 412 aa35.95■■■■□ 3.35
HPS3-207ENST00000494327 FHOD3Q2V2M9 1422 aa35.94■■■■□ 3.34
HPS3-207ENST00000494327 EFCAB5A4FU69 1503 aa35.84■■■■□ 3.33
HPS3-207ENST00000494327 EPRSP07814 1512 aaKnown RBP35.83■■■■□ 3.33
HPS3-207ENST00000494327 WDR7Q9Y4E6 1490 aa35.81■■■■□ 3.32
HPS3-207ENST00000494327 KCNH8Q96L42 1107 aa35.81■■■■□ 3.32
HPS3-207ENST00000494327 TSPOAP1O95153 1857 aa35.8■■■■□ 3.32
HPS3-207ENST00000494327 GLI2P10070 1586 aa35.79■■■■□ 3.32
HPS3-207ENST00000494327 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.78■■■■□ 3.32
HPS3-207ENST00000494327 HNRNPUL2Q1KMD3 747 aaKnown RBP35.78■■■■□ 3.32
HPS3-207ENST00000494327 RAPGEF6Q8TEU7 1601 aa35.78■■■■□ 3.32
HPS3-207ENST00000494327 ATP10BO94823 1461 aa35.78■■■■□ 3.32
HPS3-207ENST00000494327 ARHGAP35Q9NRY4 1499 aa35.69■■■■□ 3.3
HPS3-207ENST00000494327 NUP153P49790 1475 aaKnown RBP35.67■■■■□ 3.3
HPS3-207ENST00000494327 ATP1B4Q9UN42 357 aaPredicted RBP35.62■■■■□ 3.29
HPS3-207ENST00000494327 MAP3K4Q9Y6R4 1608 aa35.61■■■■□ 3.29
HPS3-207ENST00000494327 PPRC1Q5VV67 1664 aaKnown RBP35.59■■■■□ 3.29
HPS3-207ENST00000494327 FMN1Q68DA7 1419 aa35.57■■■■□ 3.29
HPS3-207ENST00000494327 KDM6BO15054 1643 aa35.57■■■■□ 3.29
HPS3-207ENST00000494327 CD109Q6YHK3 1445 aa35.56■■■■□ 3.28
HPS3-207ENST00000494327 PLEKHD1A6NEE1 506 aa35.53■■■■□ 3.28
HPS3-207ENST00000494327 TEX14Q8IWB6 1497 aa35.52■■■■□ 3.28
HPS3-207ENST00000494327 CFAP43Q8NDM7 1665 aa35.46■■■■□ 3.27
HPS3-207ENST00000494327 CLIP1P30622 1438 aa35.44■■■■□ 3.26
HPS3-207ENST00000494327 CDK13Q14004 1512 aaKnown RBP35.43■■■■□ 3.26
HPS3-207ENST00000494327 MAGI3Q5TCQ9 1506 aa35.42■■■■□ 3.26
HPS3-207ENST00000494327 HECW1Q76N89 1606 aa35.39■■■■□ 3.26
HPS3-207ENST00000494327 COL17A1Q9UMD9 1497 aaPredicted RBP35.38■■■■□ 3.25
HPS3-207ENST00000494327 ABCA9Q8IUA7 1624 aa35.35■■■■□ 3.25
HPS3-207ENST00000494327 LOC105371045A0A1W2PR82 267 aa35.32■■■■□ 3.24
HPS3-207ENST00000494327 CDK11AQ9UQ88 783 aaPredicted RBP35.3■■■■□ 3.24
HPS3-207ENST00000494327 CASKIN1Q8WXD9 1431 aa35.26■■■■□ 3.24
HPS3-207ENST00000494327 PCF11O94913 1555 aaKnown RBP35.24■■■■□ 3.23
HPS3-207ENST00000494327 CEP162Q5TB80 1403 aa35.21■■■■□ 3.23
HPS3-207ENST00000494327 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.21■■■■□ 3.23
HPS3-207ENST00000494327 AEBP2Q6ZN18 517 aaPredicted RBP35.19■■■■□ 3.22
HPS3-207ENST00000494327 LRRIQ1Q96JM4 1722 aa35.15■■■■□ 3.22
HPS3-207ENST00000494327 PHLDB1Q86UU1 1377 aa35.15■■■■□ 3.22
HPS3-207ENST00000494327 TTC37Q6PGP7 1564 aa35.14■■■■□ 3.22
HPS3-207ENST00000494327 FYCO1Q9BQS8 1478 aa35.14■■■■□ 3.22
HPS3-207ENST00000494327 CCDC18Q5T9S5 1454 aa35.13■■■■□ 3.21
HPS3-207ENST00000494327 NEO1Q92859 1461 aa35.13■■■■□ 3.21
HPS3-207ENST00000494327 TROQ12816 1431 aaPredicted RBP35.13■■■■□ 3.21
HPS3-207ENST00000494327 ARAP3Q8WWN8 1544 aa35.12■■■■□ 3.21
HPS3-207ENST00000494327 RAPGEF3O95398 923 aa35.08■■■■□ 3.21
HPS3-207ENST00000494327 FANCAO15360 1455 aa35.05■■■■□ 3.2
HPS3-207ENST00000494327 KIF14Q15058 1648 aa35.03■■■■□ 3.2
HPS3-207ENST00000494327 AKNAQ7Z591 1439 aa35.03■■■■□ 3.2
HPS3-207ENST00000494327 PLCH2O75038 1416 aa35.02■■■■□ 3.2
HPS3-207ENST00000494327 KDM4FA0A1W2PPD8 638 aa34.97■■■■□ 3.19
HPS3-207ENST00000494327 EFCAB2Q5VUJ9 269 aa34.96■■■■□ 3.19
HPS3-207ENST00000494327 CFAP74Q9C0B2 1584 aa34.95■■■■□ 3.18
HPS3-207ENST00000494327 DENND4BO75064 1496 aaPredicted RBP34.94■■■■□ 3.18
HPS3-207ENST00000494327 MYO5CQ9NQX4 1742 aa34.9■■■■□ 3.18
HPS3-207ENST00000494327 ADGRL1O94910 1474 aa34.87■■■■□ 3.17
HPS3-207ENST00000494327 SCAPERQ9BY12 1400 aa34.87■■■■□ 3.17
HPS3-207ENST00000494327 ARHGAP5Q13017 1502 aa34.86■■■■□ 3.17
HPS3-207ENST00000494327 FRMPD1Q5SYB0 1578 aa34.86■■■■□ 3.17
HPS3-207ENST00000494327 MTUS2Q5JR59 1369 aa34.85■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms