RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 NBR1Q14596 966 aa22.33■■□□□ 1.16
CCDC88B-209ENST00000494080 KANK4Q5T7N3 995 aaPredicted RBP22.33■■□□□ 1.16
CCDC88B-209ENST00000494080 TSPY4P0CV99 314 aa22.32■■□□□ 1.16
CCDC88B-209ENST00000494080 TSPY10P0CW01 314 aa22.32■■□□□ 1.16
CCDC88B-209ENST00000494080 RUSC2Q8N2Y8 1516 aa22.3■■□□□ 1.16
CCDC88B-209ENST00000494080 VPS8Q8N3P4 1428 aa22.29■■□□□ 1.16
CCDC88B-209ENST00000494080 IRX6P78412 446 aaPredicted RBP22.29■■□□□ 1.16
CCDC88B-209ENST00000494080 SIN3AQ96ST3 1273 aa22.26■■□□□ 1.15
CCDC88B-209ENST00000494080 KDM2AQ9Y2K7 1162 aa22.25■■□□□ 1.15
CCDC88B-209ENST00000494080 EIF5BO60841 1220 aaKnown RBP22.24■■□□□ 1.15
CCDC88B-209ENST00000494080 NPM2Q86SE8 214 aaKnown RBP22.23■■□□□ 1.15
CCDC88B-209ENST00000494080 CCNB3Q8WWL7 1395 aa22.23■■□□□ 1.15
CCDC88B-209ENST00000494080 FAM9BQ8IZU0 186 aa22.23■■□□□ 1.15
CCDC88B-209ENST00000494080 KCNH8Q96L42 1107 aa22.21■■□□□ 1.15
CCDC88B-209ENST00000494080 PLEKHD1A6NEE1 506 aa22.2■■□□□ 1.14
CCDC88B-209ENST00000494080 CHGAP10645 457 aaKnown RBP22.2■■□□□ 1.14
CCDC88B-209ENST00000494080 TDRD9Q8NDG6 1382 aaKnown RBP22.19■■□□□ 1.14
CCDC88B-209ENST00000494080 TSHZ2Q9NRE2 1034 aa22.18■■□□□ 1.14
CCDC88B-209ENST00000494080 CFDP1Q9UEE9 299 aaPredicted RBP22.16■■□□□ 1.14
CCDC88B-209ENST00000494080 NPM1P06748 294 aaKnown RBP eCLIP22.16■■□□□ 1.14
CCDC88B-209ENST00000494080 RAPGEF2Q9Y4G8 1499 aa22.16■■□□□ 1.14
CCDC88B-209ENST00000494080 FHAD1B1AJZ9 1412 aa22.15■■□□□ 1.14
CCDC88B-209ENST00000494080 CADPSQ9ULU8 1353 aa22.14■■□□□ 1.14
CCDC88B-209ENST00000494080 ERCC6Q03468 1493 aa22.12■■□□□ 1.13
CCDC88B-209ENST00000494080 EIF4G2P78344 907 aaKnown RBP eCLIP22.1■■□□□ 1.13
CCDC88B-209ENST00000494080 SALL2Q9Y467 1007 aaPredicted RBP22.09■■□□□ 1.13
CCDC88B-209ENST00000494080 EIF4G1Q04637 1599 aaKnown RBP22.09■■□□□ 1.13
CCDC88B-209ENST00000494080 RBM19Q9Y4C8 960 aaKnown RBP22.08■■□□□ 1.13
CCDC88B-209ENST00000494080 ZBTB47Q9UFB7 747 aaPredicted RBP22.07■■□□□ 1.12
CCDC88B-209ENST00000494080 MRS2Q9HD23 443 aa22.05■■□□□ 1.12
CCDC88B-209ENST00000494080 RGL3Q3MIN7 710 aa22.03■■□□□ 1.12
CCDC88B-209ENST00000494080 CCDC136Q96JN2 1154 aa22.01■■□□□ 1.11
CCDC88B-209ENST00000494080 TMC1Q8TDI8 760 aa22■■□□□ 1.11
CCDC88B-209ENST00000494080 PDS5BQ9NTI5 1447 aa22■■□□□ 1.11
CCDC88B-209ENST00000494080 SENP3-EIF4A1A0A087X0R7 540 aa21.93■■□□□ 1.1
CCDC88B-209ENST00000494080 FHOD3Q2V2M9 1422 aa21.92■■□□□ 1.1
CCDC88B-209ENST00000494080 STAG3Q9UJ98 1225 aa21.92■■□□□ 1.1
CCDC88B-209ENST00000494080 SETD5Q9C0A6 1442 aa21.91■■□□□ 1.1
CCDC88B-209ENST00000494080 SENP3Q9H4L4 574 aaPredicted RBP21.91■■□□□ 1.1
CCDC88B-209ENST00000494080 CANXP27824 592 aaKnown RBP21.9■■□□□ 1.1
CCDC88B-209ENST00000494080 RAB3GAP2Q9H2M9 1393 aa21.9■■□□□ 1.1
CCDC88B-209ENST00000494080 ARHGAP35Q9NRY4 1499 aa21.89■■□□□ 1.09
CCDC88B-209ENST00000494080 PLPPR3Q6T4P5 718 aa21.88■■□□□ 1.09
CCDC88B-209ENST00000494080 ESF1Q9H501 851 aaKnown RBP21.88■■□□□ 1.09
CCDC88B-209ENST00000494080 FOXD1Q16676 465 aa21.85■■□□□ 1.09
CCDC88B-209ENST00000494080 DEKP35659 375 aaKnown RBP21.85■■□□□ 1.09
CCDC88B-209ENST00000494080 FANCD2Q9BXW9 1451 aa21.84■■□□□ 1.09
CCDC88B-209ENST00000494080 RTN4Q9NQC3 1192 aaKnown RBP21.83■■□□□ 1.09
CCDC88B-209ENST00000494080 FMN1Q68DA7 1419 aa21.83■■□□□ 1.08
CCDC88B-209ENST00000494080 CARD11Q9BXL7 1154 aa21.8■■□□□ 1.08
CCDC88B-209ENST00000494080 IGF1RP08069 1367 aa21.78■■□□□ 1.08
CCDC88B-209ENST00000494080 NEFMP07197 916 aa21.78■■□□□ 1.08
CCDC88B-209ENST00000494080 NOP58Q9Y2X3 529 aaKnown RBP21.77■■□□□ 1.08
CCDC88B-209ENST00000494080 PPP4R2Q9NY27 417 aa21.77■■□□□ 1.08
CCDC88B-209ENST00000494080 NCAPD3P42695 1498 aa21.77■■□□□ 1.08
CCDC88B-209ENST00000494080 B4GALNT3Q6L9W6 998 aa21.75■■□□□ 1.07
CCDC88B-209ENST00000494080 SLC24A1O60721 1099 aa21.74■■□□□ 1.07
CCDC88B-209ENST00000494080 TIMELESSQ9UNS1 1208 aa21.73■■□□□ 1.07
CCDC88B-209ENST00000494080 FGD5Q6ZNL6 1462 aa21.72■■□□□ 1.07
CCDC88B-209ENST00000494080 WDR43Q15061 677 aaKnown RBP eCLIP21.7■■□□□ 1.06
CCDC88B-209ENST00000494080 RAD54L2Q9Y4B4 1467 aa21.7■■□□□ 1.06
CCDC88B-209ENST00000494080 DCAF11Q8TEB1 546 aa21.68■■□□□ 1.06
CCDC88B-209ENST00000494080 PKD2Q13563 968 aa21.67■■□□□ 1.06
CCDC88B-209ENST00000494080 MPHOSPH9Q99550 1183 aa21.67■■□□□ 1.06
CCDC88B-209ENST00000494080 DHX57Q6P158 1386 aaKnown RBP21.66■■□□□ 1.06
CCDC88B-209ENST00000494080 SYNJ1O43426 1573 aa21.65■■□□□ 1.06
CCDC88B-209ENST00000494080 CARMIL2Q6F5E8 1435 aa21.64■■□□□ 1.06
CCDC88B-209ENST00000494080 HSPA5P11021 654 aaKnown RBP21.64■■□□□ 1.06
CCDC88B-209ENST00000494080 PPP1R15AO75807 674 aaPredicted RBP21.64■■□□□ 1.05
CCDC88B-209ENST00000494080 LAS1LQ9Y4W2 734 aaKnown RBP21.63■■□□□ 1.05
CCDC88B-209ENST00000494080 GLIPR1L2Q4G1C9 344 aa21.62■■□□□ 1.05
CCDC88B-209ENST00000494080 JPH4Q96JJ6 628 aa21.62■■□□□ 1.05
CCDC88B-209ENST00000494080 CCER2I3L3R5 266 aa21.61■■□□□ 1.05
CCDC88B-209ENST00000494080 ARXQ96QS3 562 aa21.6■■□□□ 1.05
CCDC88B-209ENST00000494080 KIF21BO75037 1637 aa21.57■■□□□ 1.04
CCDC88B-209ENST00000494080 L3MBTL2Q969R5 705 aa21.54■■□□□ 1.04
CCDC88B-209ENST00000494080 CFTRP13569 1480 aa21.54■■□□□ 1.04
CCDC88B-209ENST00000494080 KNSTRNQ9Y448 316 aa21.53■■□□□ 1.04
CCDC88B-209ENST00000494080 HNRNPMP52272 730 aaKnown RBP eCLIP21.53■■□□□ 1.04
CCDC88B-209ENST00000494080 NUP155O75694 1391 aa21.52■■□□□ 1.04
CCDC88B-209ENST00000494080 GAPVD1Q14C86 1478 aa21.52■■□□□ 1.04
CCDC88B-209ENST00000494080 PRKCSHP14314 528 aaPredicted RBP21.51■■□□□ 1.03
CCDC88B-209ENST00000494080 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.51■■□□□ 1.03
CCDC88B-209ENST00000494080 PPM1GO15355 546 aaPredicted RBP21.5■■□□□ 1.03
CCDC88B-209ENST00000494080 CC2D1BQ5T0F9 858 aaKnown RBP21.5■■□□□ 1.03
CCDC88B-209ENST00000494080 ARAP1Q96P48 1450 aa21.48■■□□□ 1.03
CCDC88B-209ENST00000494080 NESP48681 1621 aa21.48■■□□□ 1.03
CCDC88B-209ENST00000494080 BICRAQ9NZM4 1560 aa21.46■■□□□ 1.03
CCDC88B-209ENST00000494080 ANKRD30AQ9BXX3 1397 aa21.45■■□□□ 1.02
CCDC88B-209ENST00000494080 CDCA8Q53HL2 280 aa21.45■■□□□ 1.02
CCDC88B-209ENST00000494080 DDRGK1Q96HY6 314 aa21.45■■□□□ 1.02
CCDC88B-209ENST00000494080 PHLDB1Q86UU1 1377 aa21.45■■□□□ 1.02
CCDC88B-209ENST00000494080 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.45■■□□□ 1.02
CCDC88B-209ENST00000494080 CCDC18Q5T9S5 1454 aa21.44■■□□□ 1.02
CCDC88B-209ENST00000494080 AQRO60306 1485 aaKnown RBP eCLIP21.44■■□□□ 1.02
CCDC88B-209ENST00000494080 EFCAB2Q5VUJ9 269 aa21.42■■□□□ 1.02
CCDC88B-209ENST00000494080 GGT6Q6P531 493 aa21.41■■□□□ 1.02
CCDC88B-209ENST00000494080 TNNT2P45379 298 aaPredicted RBP21.4■■□□□ 1.02
CCDC88B-209ENST00000494080 CUX1P39880 1505 aa21.4■■□□□ 1.02
CCDC88B-209ENST00000494080 UPF2Q9HAU5 1272 aaKnown RBP21.39■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms