RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 NUP160Q12769 1436 aa31.39■■■□□ 2.62
USP39-218ENST00000493829 TNIKQ9UKE5 1360 aa31.36■■■□□ 2.61
USP39-218ENST00000493829 RANGAP1P46060 587 aaPredicted RBP31.35■■■□□ 2.61
USP39-218ENST00000493829 IQGAP2Q13576 1575 aa31.32■■■□□ 2.6
USP39-218ENST00000493829 KIAA0586Q9BVV6 1533 aa31.29■■■□□ 2.6
USP39-218ENST00000493829 CLASP1Q7Z460 1538 aa31.23■■■□□ 2.59
USP39-218ENST00000493829 CEP162Q5TB80 1403 aa31.21■■■□□ 2.59
USP39-218ENST00000493829 OSCARQ8IYS5 282 aa31.19■■■□□ 2.58
USP39-218ENST00000493829 CLIP1P30622 1438 aa31.14■■■□□ 2.58
USP39-218ENST00000493829 UGGT2Q9NYU1 1516 aa31.1■■■□□ 2.57
USP39-218ENST00000493829 SHROOM2Q13796 1616 aa31.09■■■□□ 2.57
USP39-218ENST00000493829 JPH4Q96JJ6 628 aa31.06■■■□□ 2.56
USP39-218ENST00000493829 SAMD9Q5K651 1589 aa31.05■■■□□ 2.56
USP39-218ENST00000493829 ARHGAP35Q9NRY4 1499 aa31.05■■■□□ 2.56
USP39-218ENST00000493829 P3H3Q8IVL6 736 aa31.04■■■□□ 2.56
USP39-218ENST00000493829 EFCAB5A4FU69 1503 aa31.04■■■□□ 2.56
USP39-218ENST00000493829 KIAA0556O60303 1618 aa31.01■■■□□ 2.56
USP39-218ENST00000493829 DISP1Q96F81 1524 aa31.01■■■□□ 2.56
USP39-218ENST00000493829 PRG4Q92954 1404 aaPredicted RBP31.01■■■□□ 2.55
USP39-218ENST00000493829 ERCC6L2Q5T890 1561 aa30.98■■■□□ 2.55
USP39-218ENST00000493829 FHOD3Q2V2M9 1422 aa30.98■■■□□ 2.55
USP39-218ENST00000493829 ARAP1Q96P48 1450 aa30.95■■■□□ 2.55
USP39-218ENST00000493829 CARMIL2Q6F5E8 1435 aa30.93■■■□□ 2.54
USP39-218ENST00000493829 TTBK1Q5TCY1 1321 aaPredicted RBP30.91■■■□□ 2.54
USP39-218ENST00000493829 ARHGEF11O15085 1522 aa30.78■■■□□ 2.52
USP39-218ENST00000493829 VPS8Q8N3P4 1428 aa30.74■■■□□ 2.51
USP39-218ENST00000493829 RIMBP3CA6NJZ7 1639 aa30.73■■■□□ 2.51
USP39-218ENST00000493829 RIMBP3BA6NNM3 1639 aa30.73■■■□□ 2.51
USP39-218ENST00000493829 RIMBP3Q9UFD9 1639 aa30.73■■■□□ 2.51
USP39-218ENST00000493829 PCF11O94913 1555 aaKnown RBP30.72■■■□□ 2.51
USP39-218ENST00000493829 FMN1Q68DA7 1419 aa30.72■■■□□ 2.51
USP39-218ENST00000493829 PTPRGP23470 1445 aa30.7■■■□□ 2.51
USP39-218ENST00000493829 PLB1Q6P1J6 1458 aa30.65■■■□□ 2.5
USP39-218ENST00000493829 ATP1B4Q9UN42 357 aaPredicted RBP30.62■■■□□ 2.49
USP39-218ENST00000493829 RAPGEF6Q8TEU7 1601 aa30.62■■■□□ 2.49
USP39-218ENST00000493829 FYCO1Q9BQS8 1478 aa30.58■■■□□ 2.49
USP39-218ENST00000493829 ABCA8O94911 1581 aa30.58■■■□□ 2.49
USP39-218ENST00000493829 CASKIN1Q8WXD9 1431 aa30.58■■■□□ 2.49
USP39-218ENST00000493829 HECW1Q76N89 1606 aa30.57■■■□□ 2.48
USP39-218ENST00000493829 ARID3CA6NKF2 412 aa30.54■■■□□ 2.48
USP39-218ENST00000493829 UACAQ9BZF9 1416 aa30.53■■■□□ 2.48
USP39-218ENST00000493829 LRRIQ1Q96JM4 1722 aa30.52■■■□□ 2.48
USP39-218ENST00000493829 NUP153P49790 1475 aaKnown RBP30.5■■■□□ 2.47
USP39-218ENST00000493829 ABCC2Q92887 1545 aa30.49■■■□□ 2.47
USP39-218ENST00000493829 ADCY10Q96PN6 1610 aa30.47■■■□□ 2.47
USP39-218ENST00000493829 CYB5RLQ6IPT4 315 aa30.46■■■□□ 2.47
USP39-218ENST00000493829 CDK13Q14004 1512 aaKnown RBP30.45■■■□□ 2.46
USP39-218ENST00000493829 EPRSP07814 1512 aaKnown RBP30.42■■■□□ 2.46
USP39-218ENST00000493829 CFAP43Q8NDM7 1665 aa30.41■■■□□ 2.46
USP39-218ENST00000493829 DNAJC5Q9H3Z4 198 aa30.4■■■□□ 2.46
USP39-218ENST00000493829 UHRF1BP1LA0JNW5 1464 aa30.4■■■□□ 2.46
USP39-218ENST00000493829 TIAM1Q13009 1591 aa30.39■■■□□ 2.45
USP39-218ENST00000493829 APLP2Q06481 763 aa30.38■■■□□ 2.45
USP39-218ENST00000493829 CCDC18Q5T9S5 1454 aa30.38■■■□□ 2.45
USP39-218ENST00000493829 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.36■■■□□ 2.45
USP39-218ENST00000493829 HNRNPUL2Q1KMD3 747 aaKnown RBP30.36■■■□□ 2.45
USP39-218ENST00000493829 ZCCHC11Q5TAX3 1644 aaKnown RBP30.34■■■□□ 2.45
USP39-218ENST00000493829 PPARGC1BQ86YN6 1023 aaKnown RBP30.33■■■□□ 2.45
USP39-218ENST00000493829 ATP10BO94823 1461 aa30.32■■■□□ 2.44
USP39-218ENST00000493829 KDM5BQ9UGL1 1544 aa30.28■■■□□ 2.44
USP39-218ENST00000493829 MAP3K1Q13233 1512 aa30.27■■■□□ 2.44
USP39-218ENST00000493829 MAGI3Q5TCQ9 1506 aa30.24■■■□□ 2.43
USP39-218ENST00000493829 KANK4Q5T7N3 995 aaPredicted RBP30.23■■■□□ 2.43
USP39-218ENST00000493829 LRRC9Q6ZRR7 1453 aa30.21■■■□□ 2.43
USP39-218ENST00000493829 MTUS2Q5JR59 1369 aa30.19■■■□□ 2.42
USP39-218ENST00000493829 NPM1P06748 294 aaKnown RBP eCLIP30.17■■■□□ 2.42
USP39-218ENST00000493829 EHBP1L1Q8N3D4 1523 aa30.17■■■□□ 2.42
USP39-218ENST00000493829 CDK11AQ9UQ88 783 aaPredicted RBP30.13■■■□□ 2.41
USP39-218ENST00000493829 TROQ12816 1431 aaPredicted RBP30.1■■■□□ 2.41
USP39-218ENST00000493829 PLEKHD1A6NEE1 506 aa30.1■■■□□ 2.41
USP39-218ENST00000493829 ASXL2Q76L83 1435 aa30.09■■■□□ 2.41
USP39-218ENST00000493829 KIF14Q15058 1648 aa30.08■■■□□ 2.41
USP39-218ENST00000493829 WDR7Q9Y4E6 1490 aa30.06■■■□□ 2.4
USP39-218ENST00000493829 SUPT6HQ7KZ85 1726 aaKnown RBP30.06■■■□□ 2.4
USP39-218ENST00000493829 MAPKBP1O60336 1514 aa30.03■■■□□ 2.4
USP39-218ENST00000493829 KCNH8Q96L42 1107 aa30.01■■■□□ 2.39
USP39-218ENST00000493829 NCOA2Q15596 1464 aa30■■■□□ 2.39
USP39-218ENST00000493829 TTC37Q6PGP7 1564 aa29.94■■■□□ 2.38
USP39-218ENST00000493829 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.91■■■□□ 2.38
USP39-218ENST00000493829 PHLDB1Q86UU1 1377 aa29.91■■■□□ 2.38
USP39-218ENST00000493829 ABCC10Q5T3U5 1492 aa29.89■■■□□ 2.37
USP39-218ENST00000493829 CCNB3Q8WWL7 1395 aa29.85■■■□□ 2.37
USP39-218ENST00000493829 DIP2BQ9P265 1576 aa29.84■■■□□ 2.37
USP39-218ENST00000493829 ABCA9Q8IUA7 1624 aa29.83■■■□□ 2.37
USP39-218ENST00000493829 CDC42BPAQ5VT25 1732 aa29.83■■■□□ 2.37
USP39-218ENST00000493829 ITSN2Q9NZM3 1697 aa29.82■■■□□ 2.36
USP39-218ENST00000493829 MYO5CQ9NQX4 1742 aa29.81■■■□□ 2.36
USP39-218ENST00000493829 MYOM3Q5VTT5 1437 aa29.8■■■□□ 2.36
USP39-218ENST00000493829 PREX2Q70Z35 1606 aa29.78■■■□□ 2.36
USP39-218ENST00000493829 GPATCH8Q9UKJ3 1502 aaKnown RBP29.78■■■□□ 2.36
USP39-218ENST00000493829 KIF13AQ9H1H9 1805 aa29.74■■■□□ 2.35
USP39-218ENST00000493829 FAM69CQ0P6D2 419 aa29.74■■■□□ 2.35
USP39-218ENST00000493829 FGD6Q6ZV73 1430 aa29.74■■■□□ 2.35
USP39-218ENST00000493829 CDC42BPBQ9Y5S2 1711 aa29.73■■■□□ 2.35
USP39-218ENST00000493829 GLI2P10070 1586 aa29.73■■■□□ 2.35
USP39-218ENST00000493829 ARHGAP5Q13017 1502 aa29.72■■■□□ 2.35
USP39-218ENST00000493829 MAP3K4Q9Y6R4 1608 aa29.71■■■□□ 2.35
USP39-218ENST00000493829 PTPN23Q9H3S7 1636 aa29.69■■■□□ 2.34
USP39-218ENST00000493829 CD109Q6YHK3 1445 aa29.68■■■□□ 2.34
USP39-218ENST00000493829 CFDP1Q9UEE9 299 aaPredicted RBP29.68■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms