RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 NUP160Q12769 1436 aa28.35■■■□□ 2.13
LIME1-208ENST00000493265 CUL7Q14999 1698 aa28.35■■■□□ 2.13
LIME1-208ENST00000493265 CARMIL1Q5VZK9 1371 aa28.35■■■□□ 2.13
LIME1-208ENST00000493265 FHAD1B1AJZ9 1412 aa28.34■■■□□ 2.13
LIME1-208ENST00000493265 EHMT2Q96KQ7 1210 aa28.3■■■□□ 2.12
LIME1-208ENST00000493265 SHROOM2Q13796 1616 aa28.29■■■□□ 2.12
LIME1-208ENST00000493265 PRXQ9BXM0 1461 aa28.22■■■□□ 2.11
LIME1-208ENST00000493265 RAPGEF2Q9Y4G8 1499 aa28.22■■■□□ 2.11
LIME1-208ENST00000493265 KIF21BO75037 1637 aa28.14■■■□□ 2.1
LIME1-208ENST00000493265 AEBP2Q6ZN18 517 aaPredicted RBP28.14■■■□□ 2.1
LIME1-208ENST00000493265 PRG4Q92954 1404 aaPredicted RBP28.12■■■□□ 2.09
LIME1-208ENST00000493265 KIF13AQ9H1H9 1805 aa28.08■■■□□ 2.09
LIME1-208ENST00000493265 GOLGA3Q08378 1498 aa28.06■■■□□ 2.08
LIME1-208ENST00000493265 UBTFP17480 764 aaKnown RBP28.04■■■□□ 2.08
LIME1-208ENST00000493265 JPH4Q96JJ6 628 aa28.04■■■□□ 2.08
LIME1-208ENST00000493265 LOC105371045A0A1W2PR82 267 aa28.01■■■□□ 2.07
LIME1-208ENST00000493265 CTTNBP2Q8WZ74 1663 aa27.94■■■□□ 2.06
LIME1-208ENST00000493265 KIAA0586Q9BVV6 1533 aa27.91■■■□□ 2.06
LIME1-208ENST00000493265 RANGAP1P46060 587 aaPredicted RBP27.9■■■□□ 2.06
LIME1-208ENST00000493265 ADCY10Q96PN6 1610 aa27.88■■■□□ 2.05
LIME1-208ENST00000493265 IQGAP2Q13576 1575 aa27.87■■■□□ 2.05
LIME1-208ENST00000493265 NPM1P06748 294 aaKnown RBP eCLIP27.84■■■□□ 2.05
LIME1-208ENST00000493265 ABCC10Q5T3U5 1492 aa27.83■■■□□ 2.04
LIME1-208ENST00000493265 MAPKBP1O60336 1514 aa27.82■■■□□ 2.04
LIME1-208ENST00000493265 FAM69CQ0P6D2 419 aa27.82■■■□□ 2.04
LIME1-208ENST00000493265 DIP2BQ9P265 1576 aa27.81■■■□□ 2.04
LIME1-208ENST00000493265 TNIKQ9UKE5 1360 aa27.78■■■□□ 2.04
LIME1-208ENST00000493265 TSPOAP1O95153 1857 aa27.7■■■□□ 2.03
LIME1-208ENST00000493265 UGGT2Q9NYU1 1516 aa27.69■■■□□ 2.02
LIME1-208ENST00000493265 P3H3Q8IVL6 736 aa27.67■■■□□ 2.02
LIME1-208ENST00000493265 TTBK1Q5TCY1 1321 aaPredicted RBP27.67■■■□□ 2.02
LIME1-208ENST00000493265 KDM6BO15054 1643 aa27.64■■■□□ 2.02
LIME1-208ENST00000493265 PTPRGP23470 1445 aa27.63■■■□□ 2.01
LIME1-208ENST00000493265 CARMIL2Q6F5E8 1435 aa27.63■■■□□ 2.01
LIME1-208ENST00000493265 DISP1Q96F81 1524 aa27.62■■■□□ 2.01
LIME1-208ENST00000493265 CEP162Q5TB80 1403 aa27.6■■■□□ 2.01
LIME1-208ENST00000493265 KIAA0556O60303 1618 aa27.59■■■□□ 2.01
LIME1-208ENST00000493265 CLIP1P30622 1438 aa27.59■■■□□ 2.01
LIME1-208ENST00000493265 SAMD9Q5K651 1589 aa27.57■■■□□ 2
LIME1-208ENST00000493265 EFCAB5A4FU69 1503 aa27.55■■■□□ 2
LIME1-208ENST00000493265 ARHGAP35Q9NRY4 1499 aa27.54■■■□□ 2
LIME1-208ENST00000493265 ABCC2Q92887 1545 aa27.53■■■□□ 2
LIME1-208ENST00000493265 FHOD3Q2V2M9 1422 aa27.53■■■□□ 2
LIME1-208ENST00000493265 ASXL2Q76L83 1435 aa27.47■■□□□ 1.99
LIME1-208ENST00000493265 PPRC1Q5VV67 1664 aaKnown RBP27.43■■□□□ 1.98
LIME1-208ENST00000493265 UHRF1BP1LA0JNW5 1464 aa27.43■■□□□ 1.98
LIME1-208ENST00000493265 PLB1Q6P1J6 1458 aa27.43■■□□□ 1.98
LIME1-208ENST00000493265 UACAQ9BZF9 1416 aa27.41■■□□□ 1.98
LIME1-208ENST00000493265 GLI2P10070 1586 aa27.4■■□□□ 1.98
LIME1-208ENST00000493265 KDM4FA0A1W2PPD8 638 aa27.39■■□□□ 1.98
LIME1-208ENST00000493265 ZCCHC11Q5TAX3 1644 aaKnown RBP27.34■■□□□ 1.97
LIME1-208ENST00000493265 KDM5BQ9UGL1 1544 aa27.32■■□□□ 1.96
LIME1-208ENST00000493265 ATP1B4Q9UN42 357 aaPredicted RBP27.31■■□□□ 1.96
LIME1-208ENST00000493265 FMN1Q68DA7 1419 aa27.31■■□□□ 1.96
LIME1-208ENST00000493265 EPRSP07814 1512 aaKnown RBP27.3■■□□□ 1.96
LIME1-208ENST00000493265 MAP3K4Q9Y6R4 1608 aa27.3■■□□□ 1.96
LIME1-208ENST00000493265 ARID3CA6NKF2 412 aa27.25■■□□□ 1.95
LIME1-208ENST00000493265 RAPGEF6Q8TEU7 1601 aa27.23■■□□□ 1.95
LIME1-208ENST00000493265 ABCA8O94911 1581 aa27.23■■□□□ 1.95
LIME1-208ENST00000493265 PCF11O94913 1555 aaKnown RBP27.22■■□□□ 1.95
LIME1-208ENST00000493265 COL17A1Q9UMD9 1497 aaPredicted RBP27.2■■□□□ 1.95
LIME1-208ENST00000493265 VPS8Q8N3P4 1428 aa27.2■■□□□ 1.94
LIME1-208ENST00000493265 TEX14Q8IWB6 1497 aa27.19■■□□□ 1.94
LIME1-208ENST00000493265 ADGRL1O94910 1474 aa27.18■■□□□ 1.94
LIME1-208ENST00000493265 WDR7Q9Y4E6 1490 aa27.16■■□□□ 1.94
LIME1-208ENST00000493265 CASKIN1Q8WXD9 1431 aa27.16■■□□□ 1.94
LIME1-208ENST00000493265 HECW1Q76N89 1606 aa27.14■■□□□ 1.94
LIME1-208ENST00000493265 NUP153P49790 1475 aaKnown RBP27.13■■□□□ 1.93
LIME1-208ENST00000493265 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.13■■□□□ 1.93
LIME1-208ENST00000493265 HNRNPUL2Q1KMD3 747 aaKnown RBP27.13■■□□□ 1.93
LIME1-208ENST00000493265 FYCO1Q9BQS8 1478 aa27.13■■□□□ 1.93
LIME1-208ENST00000493265 CDK13Q14004 1512 aaKnown RBP27.06■■□□□ 1.92
LIME1-208ENST00000493265 CFAP43Q8NDM7 1665 aa27.06■■□□□ 1.92
LIME1-208ENST00000493265 ATP10BO94823 1461 aa27.05■■□□□ 1.92
LIME1-208ENST00000493265 LRRIQ1Q96JM4 1722 aa27.04■■□□□ 1.92
LIME1-208ENST00000493265 KCNH8Q96L42 1107 aa27.02■■□□□ 1.92
LIME1-208ENST00000493265 CD109Q6YHK3 1445 aa27.01■■□□□ 1.91
LIME1-208ENST00000493265 APLP2Q06481 763 aa26.99■■□□□ 1.91
LIME1-208ENST00000493265 MAGI3Q5TCQ9 1506 aa26.98■■□□□ 1.91
LIME1-208ENST00000493265 CCDC18Q5T9S5 1454 aa26.98■■□□□ 1.91
LIME1-208ENST00000493265 TIAM1Q13009 1591 aa26.9■■□□□ 1.9
LIME1-208ENST00000493265 PLEKHD1A6NEE1 506 aa26.9■■□□□ 1.9
LIME1-208ENST00000493265 CDK11AQ9UQ88 783 aaPredicted RBP26.9■■□□□ 1.9
LIME1-208ENST00000493265 HECW2Q9P2P5 1572 aa26.89■■□□□ 1.9
LIME1-208ENST00000493265 PPARGC1BQ86YN6 1023 aaKnown RBP26.84■■□□□ 1.89
LIME1-208ENST00000493265 MTUS2Q5JR59 1369 aa26.84■■□□□ 1.89
LIME1-208ENST00000493265 KANK4Q5T7N3 995 aaPredicted RBP26.82■■□□□ 1.88
LIME1-208ENST00000493265 MAP3K1Q13233 1512 aa26.81■■□□□ 1.88
LIME1-208ENST00000493265 ILDR1Q86SU0 546 aaPredicted RBP26.81■■□□□ 1.88
LIME1-208ENST00000493265 ABCA9Q8IUA7 1624 aa26.79■■□□□ 1.88
LIME1-208ENST00000493265 TROQ12816 1431 aaPredicted RBP26.79■■□□□ 1.88
LIME1-208ENST00000493265 LRRC9Q6ZRR7 1453 aa26.78■■□□□ 1.88
LIME1-208ENST00000493265 ARAP3Q8WWN8 1544 aa26.78■■□□□ 1.88
LIME1-208ENST00000493265 EHBP1L1Q8N3D4 1523 aa26.75■■□□□ 1.87
LIME1-208ENST00000493265 KIF14Q15058 1648 aa26.72■■□□□ 1.87
LIME1-208ENST00000493265 SUPT6HQ7KZ85 1726 aaKnown RBP26.65■■□□□ 1.86
LIME1-208ENST00000493265 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.65■■□□□ 1.86
LIME1-208ENST00000493265 PHLDB1Q86UU1 1377 aa26.64■■□□□ 1.86
LIME1-208ENST00000493265 RAPGEF3O95398 923 aa26.64■■□□□ 1.86
LIME1-208ENST00000493265 TTC37Q6PGP7 1564 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms