RNA–Protein interactions for RNA: ENST00000492449.5

VPS8-225, Transcript of VPS8, CORVET complex subunit, humanhuman

TSL 1 (best)

Gene VPS8, Length 2,980 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-225ENST00000492449 CECR2Q9BXF3 1484 aa13.39□□□□□ -0.27
VPS8-225ENST00000492449 RUSC2Q8N2Y8 1516 aa13.39□□□□□ -0.27
VPS8-225ENST00000492449 IPO9Q96P70 1041 aaKnown RBP13.39□□□□□ -0.27
VPS8-225ENST00000492449 USP35Q9P2H5 1018 aa13.38□□□□□ -0.27
VPS8-225ENST00000492449 DDX10Q13206 875 aaKnown RBP13.38□□□□□ -0.27
VPS8-225ENST00000492449 WDR97A6NE52 1622 aa13.37□□□□□ -0.27
VPS8-225ENST00000492449 ANP32CO43423 234 aa13.36□□□□□ -0.27
VPS8-225ENST00000492449 SMARCA2P51531 1590 aa13.36□□□□□ -0.27
VPS8-225ENST00000492449 RTN4Q9NQC3 1192 aaKnown RBP13.35□□□□□ -0.27
VPS8-225ENST00000492449 TOP2AP11388 1531 aaKnown RBP13.32□□□□□ -0.28
VPS8-225ENST00000492449 ANP32AP39687 249 aaKnown RBP13.32□□□□□ -0.28
VPS8-225ENST00000492449 NCAPD3P42695 1498 aa13.31□□□□□ -0.28
VPS8-225ENST00000492449 ZBTB47Q9UFB7 747 aaPredicted RBP13.3□□□□□ -0.28
VPS8-225ENST00000492449 TIMELESSQ9UNS1 1208 aa13.3□□□□□ -0.28
VPS8-225ENST00000492449 RSPH6AQ9H0K4 717 aa13.29□□□□□ -0.28
VPS8-225ENST00000492449 IRX6P78412 446 aaPredicted RBP13.27□□□□□ -0.28
VPS8-225ENST00000492449 PEG3Q9GZU2 1588 aa13.26□□□□□ -0.29
VPS8-225ENST00000492449 SYNJ1O43426 1573 aa13.24□□□□□ -0.29
VPS8-225ENST00000492449 SLC24A1O60721 1099 aa13.24□□□□□ -0.29
VPS8-225ENST00000492449 HNRNPUQ00839 825 aaKnown RBP eCLIP13.23□□□□□ -0.29
VPS8-225ENST00000492449 DAXXQ9UER7 740 aaPredicted RBP13.22□□□□□ -0.29
VPS8-225ENST00000492449 GLIPR1L2Q4G1C9 344 aa13.22□□□□□ -0.29
VPS8-225ENST00000492449 B4GALNT3Q6L9W6 998 aa13.22□□□□□ -0.29
VPS8-225ENST00000492449 PABPN1Q86U42 306 aaKnown RBP eCLIP13.22□□□□□ -0.29
VPS8-225ENST00000492449 CCNB3Q8WWL7 1395 aa13.2□□□□□ -0.3
VPS8-225ENST00000492449 RAB3GAP2Q9H2M9 1393 aa13.2□□□□□ -0.3
VPS8-225ENST00000492449 PPM1GO15355 546 aaPredicted RBP13.19□□□□□ -0.3
VPS8-225ENST00000492449 NEFMP07197 916 aa13.17□□□□□ -0.3
VPS8-225ENST00000492449 FAM43AQ8N2R8 423 aa13.17□□□□□ -0.3
VPS8-225ENST00000492449 BRPF3Q9ULD4 1205 aa13.17□□□□□ -0.3
VPS8-225ENST00000492449 ARAP1Q96P48 1450 aa13.17□□□□□ -0.3
VPS8-225ENST00000492449 RAPGEF2Q9Y4G8 1499 aa13.15□□□□□ -0.3
VPS8-225ENST00000492449 GSE1Q14687 1217 aa13.14□□□□□ -0.31
VPS8-225ENST00000492449 ZBED9Q6R2W3 1325 aa13.13□□□□□ -0.31
VPS8-225ENST00000492449 SETD5Q9C0A6 1442 aa13.13□□□□□ -0.31
VPS8-225ENST00000492449 RNF123Q5XPI4 1314 aa13.12□□□□□ -0.31
VPS8-225ENST00000492449 ERICH3Q5RHP9 1530 aa13.12□□□□□ -0.31
VPS8-225ENST00000492449 PODXL2Q9NZ53 605 aa13.11□□□□□ -0.31
VPS8-225ENST00000492449 ZMYND15Q9H091 742 aa13.11□□□□□ -0.31
VPS8-225ENST00000492449 KANK4Q5T7N3 995 aaPredicted RBP13.1□□□□□ -0.31
VPS8-225ENST00000492449 NCOA2Q15596 1464 aa13.08□□□□□ -0.32
VPS8-225ENST00000492449 SMG6Q86US8 1419 aaKnown RBP13.08□□□□□ -0.32
VPS8-225ENST00000492449 FHAD1B1AJZ9 1412 aa13.07□□□□□ -0.32
VPS8-225ENST00000492449 UNC13AQ9UPW8 1703 aa13.07□□□□□ -0.32
VPS8-225ENST00000492449 MAP3K1Q13233 1512 aa13.06□□□□□ -0.32
VPS8-225ENST00000492449 SMARCA4P51532 1647 aa13.04□□□□□ -0.32
VPS8-225ENST00000492449 SIN3AQ96ST3 1273 aa13.04□□□□□ -0.32
VPS8-225ENST00000492449 LAS1LQ9Y4W2 734 aaKnown RBP13.04□□□□□ -0.32
VPS8-225ENST00000492449 PLEKHG5O94827 1062 aa13.03□□□□□ -0.32
VPS8-225ENST00000492449 TCERG1O14776 1098 aaKnown RBP13.02□□□□□ -0.33
VPS8-225ENST00000492449 VSIG10Q8N0Z9 540 aa13.02□□□□□ -0.33
VPS8-225ENST00000492449 FRAT1Q92837 279 aaPredicted RBP13.01□□□□□ -0.33
VPS8-225ENST00000492449 HIRIP3Q9BW71 556 aaPredicted RBP13.01□□□□□ -0.33
VPS8-225ENST00000492449 CNTLNQ9NXG0 1405 aa13□□□□□ -0.33
VPS8-225ENST00000492449 MS4A1P11836 297 aa12.99□□□□□ -0.33
VPS8-225ENST00000492449 RRP9O43818 475 aaKnown RBP12.99□□□□□ -0.33
VPS8-225ENST00000492449 KDM5BQ9UGL1 1544 aa12.99□□□□□ -0.33
VPS8-225ENST00000492449 DDRGK1Q96HY6 314 aa12.99□□□□□ -0.33
VPS8-225ENST00000492449 POLR1AO95602 1720 aaPredicted RBP12.98□□□□□ -0.33
VPS8-225ENST00000492449 PRXQ9BXM0 1461 aa12.97□□□□□ -0.33
VPS8-225ENST00000492449 NFKBIBQ15653 356 aa12.97□□□□□ -0.33
VPS8-225ENST00000492449 BACH2Q9BYV9 841 aa12.97□□□□□ -0.33
VPS8-225ENST00000492449 ABCA5Q8WWZ7 1642 aa12.97□□□□□ -0.33
VPS8-225ENST00000492449 TIAM1Q13009 1591 aa12.97□□□□□ -0.33
VPS8-225ENST00000492449 AKNAQ7Z591 1439 aa12.96□□□□□ -0.33
VPS8-225ENST00000492449 PDE4AP27815 886 aa12.95□□□□□ -0.34
VPS8-225ENST00000492449 BICRAQ9NZM4 1560 aa12.95□□□□□ -0.34
VPS8-225ENST00000492449 NUDCQ9Y266 331 aa12.94□□□□□ -0.34
VPS8-225ENST00000492449 TONSLQ96HA7 1378 aa12.93□□□□□ -0.34
VPS8-225ENST00000492449 CCDC184Q52MB2 194 aa12.93□□□□□ -0.34
VPS8-225ENST00000492449 DCAF11Q8TEB1 546 aa12.92□□□□□ -0.34
VPS8-225ENST00000492449 HSP90AA2PQ14568 343 aaPredicted RBP12.91□□□□□ -0.34
VPS8-225ENST00000492449 PRKRIP1Q9H875 184 aaPredicted RBP12.91□□□□□ -0.34
VPS8-225ENST00000492449 NPM2Q86SE8 214 aaKnown RBP12.9□□□□□ -0.34
VPS8-225ENST00000492449 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.9□□□□□ -0.34
VPS8-225ENST00000492449 TOP2BQ02880 1626 aa12.9□□□□□ -0.35
VPS8-225ENST00000492449 CFAP43Q8NDM7 1665 aa12.89□□□□□ -0.35
VPS8-225ENST00000492449 BIVM-ERCC5R4GMW8 1640 aa12.88□□□□□ -0.35
VPS8-225ENST00000492449 ARHGAP35Q9NRY4 1499 aa12.88□□□□□ -0.35
VPS8-225ENST00000492449 RRAGDQ9NQL2 400 aaPredicted RBP12.88□□□□□ -0.35
VPS8-225ENST00000492449 LRRC9Q6ZRR7 1453 aa12.86□□□□□ -0.35
VPS8-225ENST00000492449 MRS2Q9HD23 443 aa12.86□□□□□ -0.35
VPS8-225ENST00000492449 NCOA1Q15788 1441 aa12.86□□□□□ -0.35
VPS8-225ENST00000492449 FAM9BQ8IZU0 186 aa12.86□□□□□ -0.35
VPS8-225ENST00000492449 CENPJQ9HC77 1338 aaPredicted RBP12.85□□□□□ -0.35
VPS8-225ENST00000492449 HSP90AA1P07900 732 aaKnown RBP12.85□□□□□ -0.35
VPS8-225ENST00000492449 UACAQ9BZF9 1416 aa12.83□□□□□ -0.36
VPS8-225ENST00000492449 PHLDB1Q86UU1 1377 aa12.82□□□□□ -0.36
VPS8-225ENST00000492449 CLCN1P35523 988 aa12.82□□□□□ -0.36
VPS8-225ENST00000492449 CCDC7Q96M83 1385 aa12.81□□□□□ -0.36
VPS8-225ENST00000492449 HSPA5P11021 654 aaKnown RBP12.81□□□□□ -0.36
VPS8-225ENST00000492449 L1TD1Q5T7N2 865 aaKnown RBP12.8□□□□□ -0.36
VPS8-225ENST00000492449 DNAJC5BQ9UF47 199 aa12.8□□□□□ -0.36
VPS8-225ENST00000492449 RANGAP1P46060 587 aaPredicted RBP12.79□□□□□ -0.36
VPS8-225ENST00000492449 CCDC18Q5T9S5 1454 aa12.78□□□□□ -0.36
VPS8-225ENST00000492449 PTPN23Q9H3S7 1636 aa12.78□□□□□ -0.36
VPS8-225ENST00000492449 AAMPQ13685 434 aa12.78□□□□□ -0.36
VPS8-225ENST00000492449 CALD1Q05682 793 aaKnown RBP12.77□□□□□ -0.36
VPS8-225ENST00000492449 PNNQ9H307 717 aaKnown RBP12.77□□□□□ -0.36
VPS8-225ENST00000492449 FRAT2O75474 233 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms