RNA–Protein interactions for RNA: ENST00000491467.1

SRGAP3-210, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 4

Gene SRGAP3, Length 540 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-210ENST00000491467 MAPKBP1O60336 1514 aa19.83■□□□□ 0.77
SRGAP3-210ENST00000491467 SHROOM2Q13796 1616 aa19.77■□□□□ 0.76
SRGAP3-210ENST00000491467 CCDC88BA6NC98 1476 aa19.76■□□□□ 0.75
SRGAP3-210ENST00000491467 FGD5Q6ZNL6 1462 aa19.75■□□□□ 0.75
SRGAP3-210ENST00000491467 TOP2BQ02880 1626 aa19.69■□□□□ 0.74
SRGAP3-210ENST00000491467 GRIN2AQ12879 1464 aa19.69■□□□□ 0.74
SRGAP3-210ENST00000491467 SPATA31D1Q6ZQQ2 1576 aa19.67■□□□□ 0.74
SRGAP3-210ENST00000491467 PRG4Q92954 1404 aaPredicted RBP19.65■□□□□ 0.74
SRGAP3-210ENST00000491467 ADCY10Q96PN6 1610 aa19.64■□□□□ 0.73
SRGAP3-210ENST00000491467 NUP160Q12769 1436 aa19.63■□□□□ 0.73
SRGAP3-210ENST00000491467 PPRC1Q5VV67 1664 aaKnown RBP19.62■□□□□ 0.73
SRGAP3-210ENST00000491467 CERKQ8TCT0 537 aa19.55■□□□□ 0.72
SRGAP3-210ENST00000491467 ABCA5Q8WWZ7 1642 aa19.54■□□□□ 0.72
SRGAP3-210ENST00000491467 COL17A1Q9UMD9 1497 aaPredicted RBP19.53■□□□□ 0.72
SRGAP3-210ENST00000491467 JPH4Q96JJ6 628 aa19.52■□□□□ 0.72
SRGAP3-210ENST00000491467 ADAMTS12P58397 1594 aa19.49■□□□□ 0.71
SRGAP3-210ENST00000491467 CUX1P39880 1505 aa19.48■□□□□ 0.71
SRGAP3-210ENST00000491467 GLI2P10070 1586 aa19.41■□□□□ 0.7
SRGAP3-210ENST00000491467 ABCA10Q8WWZ4 1543 aa19.4■□□□□ 0.7
SRGAP3-210ENST00000491467 PCF11O94913 1555 aaKnown RBP19.38■□□□□ 0.69
SRGAP3-210ENST00000491467 KIF21BO75037 1637 aa19.37■□□□□ 0.69
SRGAP3-210ENST00000491467 FHAD1B1AJZ9 1412 aa19.36■□□□□ 0.69
SRGAP3-210ENST00000491467 PTPRMP28827 1452 aa19.34■□□□□ 0.69
SRGAP3-210ENST00000491467 TEX14Q8IWB6 1497 aa19.34■□□□□ 0.69
SRGAP3-210ENST00000491467 ASXL2Q76L83 1435 aa19.32■□□□□ 0.68
SRGAP3-210ENST00000491467 MAP3K4Q9Y6R4 1608 aa19.31■□□□□ 0.68
SRGAP3-210ENST00000491467 PLB1Q6P1J6 1458 aa19.3■□□□□ 0.68
SRGAP3-210ENST00000491467 CUL7Q14999 1698 aa19.27■□□□□ 0.67
SRGAP3-210ENST00000491467 RUSC2Q8N2Y8 1516 aa19.26■□□□□ 0.67
SRGAP3-210ENST00000491467 HSPA2P54652 639 aa19.25■□□□□ 0.67
SRGAP3-210ENST00000491467 TTBK1Q5TCY1 1321 aaPredicted RBP19.25■□□□□ 0.67
SRGAP3-210ENST00000491467 LOC105371045A0A1W2PR82 267 aa19.24■□□□□ 0.67
SRGAP3-210ENST00000491467 ADAMTSL3P82987 1691 aa19.24■□□□□ 0.67
SRGAP3-210ENST00000491467 ABCC2Q92887 1545 aa19.2■□□□□ 0.66
SRGAP3-210ENST00000491467 EEA1Q15075 1411 aa19.18■□□□□ 0.66
SRGAP3-210ENST00000491467 EPRSP07814 1512 aaKnown RBP19.17■□□□□ 0.66
SRGAP3-210ENST00000491467 WRNQ14191 1432 aaPredicted RBP eCLIP19.15■□□□□ 0.66
SRGAP3-210ENST00000491467 PTPRGP23470 1445 aa19.14■□□□□ 0.65
SRGAP3-210ENST00000491467 ERICH3Q5RHP9 1530 aa19.14■□□□□ 0.65
SRGAP3-210ENST00000491467 KIAA0586Q9BVV6 1533 aa19.13■□□□□ 0.65
SRGAP3-210ENST00000491467 MADDQ8WXG6 1647 aa19.11■□□□□ 0.65
SRGAP3-210ENST00000491467 PLPPR3Q6T4P5 718 aa19.07■□□□□ 0.64
SRGAP3-210ENST00000491467 FAM9AQ8IZU1 332 aaPredicted RBP19.07■□□□□ 0.64
SRGAP3-210ENST00000491467 BCORL1Q5H9F3 1711 aa19.07■□□□□ 0.64
SRGAP3-210ENST00000491467 BIVM-ERCC5R4GMW8 1640 aa19.06■□□□□ 0.64
SRGAP3-210ENST00000491467 RIMS1Q86UR5 1692 aaKnown RBP19.05■□□□□ 0.64
SRGAP3-210ENST00000491467 ARID4BQ4LE39 1312 aaPredicted RBP19.01■□□□□ 0.63
SRGAP3-210ENST00000491467 ZCCHC11Q5TAX3 1644 aaKnown RBP18.97■□□□□ 0.63
SRGAP3-210ENST00000491467 UHRF1BP1LA0JNW5 1464 aa18.97■□□□□ 0.63
SRGAP3-210ENST00000491467 TNIKQ9UKE5 1360 aa18.96■□□□□ 0.63
SRGAP3-210ENST00000491467 CFAP43Q8NDM7 1665 aa18.95■□□□□ 0.62
SRGAP3-210ENST00000491467 CD109Q6YHK3 1445 aa18.95■□□□□ 0.62
SRGAP3-210ENST00000491467 MAGI3Q5TCQ9 1506 aa18.94■□□□□ 0.62
SRGAP3-210ENST00000491467 CSRNP3Q8WYN3 585 aa18.93■□□□□ 0.62
SRGAP3-210ENST00000491467 UACAQ9BZF9 1416 aa18.92■□□□□ 0.62
SRGAP3-210ENST00000491467 DMRT2Q9Y5R5 561 aa18.92■□□□□ 0.62
SRGAP3-210ENST00000491467 KDM5BQ9UGL1 1544 aa18.91■□□□□ 0.62
SRGAP3-210ENST00000491467 CARMIL2Q6F5E8 1435 aa18.9■□□□□ 0.62
SRGAP3-210ENST00000491467 STRCQ7RTU9 1775 aa18.88■□□□□ 0.61
SRGAP3-210ENST00000491467 WDR7Q9Y4E6 1490 aa18.86■□□□□ 0.61
SRGAP3-210ENST00000491467 KCNH8Q96L42 1107 aa18.85■□□□□ 0.61
SRGAP3-210ENST00000491467 MED1Q15648 1581 aaPredicted RBP18.85■□□□□ 0.61
SRGAP3-210ENST00000491467 ARAP3Q8WWN8 1544 aa18.84■□□□□ 0.61
SRGAP3-210ENST00000491467 GOLGA3Q08378 1498 aa18.84■□□□□ 0.61
SRGAP3-210ENST00000491467 YEATS2Q9ULM3 1422 aa18.83■□□□□ 0.61
SRGAP3-210ENST00000491467 TRIM26Q12899 539 aaPredicted RBP18.81■□□□□ 0.6
SRGAP3-210ENST00000491467 IQSEC2Q5JU85 1478 aa18.79■□□□□ 0.6
SRGAP3-210ENST00000491467 PREX1Q8TCU6 1659 aa18.79■□□□□ 0.6
SRGAP3-210ENST00000491467 PHF23Q9BUL5 403 aaPredicted RBP18.78■□□□□ 0.6
SRGAP3-210ENST00000491467 RAPGEF3O95398 923 aa18.76■□□□□ 0.59
SRGAP3-210ENST00000491467 UBAP1LF5GYI3 381 aa18.75■□□□□ 0.59
SRGAP3-210ENST00000491467 LTBP4Q8N2S1 1624 aa18.74■□□□□ 0.59
SRGAP3-210ENST00000491467 PCGF6Q9BYE7 350 aa18.73■□□□□ 0.59
SRGAP3-210ENST00000491467 FER1L4A9Z1Z3 1794 aa18.71■□□□□ 0.59
SRGAP3-210ENST00000491467 CEP162Q5TB80 1403 aa18.7■□□□□ 0.58
SRGAP3-210ENST00000491467 KIF27Q86VH2 1401 aa18.68■□□□□ 0.58
SRGAP3-210ENST00000491467 PTPRTO14522 1441 aa18.67■□□□□ 0.58
SRGAP3-210ENST00000491467 UBTFP17480 764 aaKnown RBP18.67■□□□□ 0.58
SRGAP3-210ENST00000491467 EHMT2Q96KQ7 1210 aa18.67■□□□□ 0.58
SRGAP3-210ENST00000491467 POGZQ7Z3K3 1410 aa18.66■□□□□ 0.58
SRGAP3-210ENST00000491467 MLECQ14165 292 aa18.64■□□□□ 0.57
SRGAP3-210ENST00000491467 IQGAP2Q13576 1575 aa18.64■□□□□ 0.57
SRGAP3-210ENST00000491467 PHLDB1Q86UU1 1377 aa18.63■□□□□ 0.57
SRGAP3-210ENST00000491467 TTC37Q6PGP7 1564 aa18.63■□□□□ 0.57
SRGAP3-210ENST00000491467 FRMPD1Q5SYB0 1578 aa18.61■□□□□ 0.57
SRGAP3-210ENST00000491467 DISP1Q96F81 1524 aa18.61■□□□□ 0.57
SRGAP3-210ENST00000491467 PRXQ9BXM0 1461 aa18.61■□□□□ 0.57
SRGAP3-210ENST00000491467 ARHGEF40Q8TER5 1519 aa18.6■□□□□ 0.57
SRGAP3-210ENST00000491467 FANCAO15360 1455 aa18.6■□□□□ 0.57
SRGAP3-210ENST00000491467 SCAF1Q9H7N4 1312 aaKnown RBP18.6■□□□□ 0.57
SRGAP3-210ENST00000491467 HSPA1LP34931 641 aa18.6■□□□□ 0.57
SRGAP3-210ENST00000491467 SETD1BQ9UPS6 1966 aaKnown RBP18.57■□□□□ 0.56
SRGAP3-210ENST00000491467 CEBPAP49715 358 aaPredicted RBP18.56■□□□□ 0.56
SRGAP3-210ENST00000491467 RAPGEF2Q9Y4G8 1499 aa18.56■□□□□ 0.56
SRGAP3-210ENST00000491467 UHRF1BP1Q6BDS2 1440 aa18.56■□□□□ 0.56
SRGAP3-210ENST00000491467 SIGLEC1Q9BZZ2 1709 aa18.55■□□□□ 0.56
SRGAP3-210ENST00000491467 HRCP23327 699 aa18.55■□□□□ 0.56
SRGAP3-210ENST00000491467 IGF1RP08069 1367 aa18.53■□□□□ 0.56
SRGAP3-210ENST00000491467 PIP4K2BP78356 416 aa18.51■□□□□ 0.55
SRGAP3-210ENST00000491467 NEO1Q92859 1461 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms