RNA–Protein interactions for RNA: ENST00000490851.5

HDAC9-225, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-225ENST00000490851 VPS8Q8N3P4 1428 aa15.65■□□□□ 0.1
HDAC9-225ENST00000490851 ARAP1Q96P48 1450 aa15.63■□□□□ 0.09
HDAC9-225ENST00000490851 DAXXQ9UER7 740 aaPredicted RBP15.63■□□□□ 0.09
HDAC9-225ENST00000490851 PBRM1Q86U86 1689 aa15.62■□□□□ 0.09
HDAC9-225ENST00000490851 ARHGAP35Q9NRY4 1499 aa15.61■□□□□ 0.09
HDAC9-225ENST00000490851 P3H3Q8IVL6 736 aa15.59■□□□□ 0.09
HDAC9-225ENST00000490851 GRIN2BQ13224 1484 aa15.58■□□□□ 0.08
HDAC9-225ENST00000490851 EIF4G3O43432 1585 aaKnown RBP15.56■□□□□ 0.08
HDAC9-225ENST00000490851 CTTNBP2Q8WZ74 1663 aa15.55■□□□□ 0.08
HDAC9-225ENST00000490851 ADAMTS12P58397 1594 aa15.54■□□□□ 0.08
HDAC9-225ENST00000490851 FHAD1B1AJZ9 1412 aa15.53■□□□□ 0.08
HDAC9-225ENST00000490851 SNAPC4Q5SXM2 1469 aa15.52■□□□□ 0.08
HDAC9-225ENST00000490851 FHOD3Q2V2M9 1422 aa15.5■□□□□ 0.07
HDAC9-225ENST00000490851 FBLN2P98095 1184 aa15.47■□□□□ 0.07
HDAC9-225ENST00000490851 ATP1B4Q9UN42 357 aaPredicted RBP15.47■□□□□ 0.07
HDAC9-225ENST00000490851 KANK4Q5T7N3 995 aaPredicted RBP15.44■□□□□ 0.06
HDAC9-225ENST00000490851 EFCAB5A4FU69 1503 aa15.43■□□□□ 0.06
HDAC9-225ENST00000490851 CHMP7Q8WUX9 453 aaPredicted RBP15.43■□□□□ 0.06
HDAC9-225ENST00000490851 HRCP23327 699 aa15.41■□□□□ 0.06
HDAC9-225ENST00000490851 GRIN2AQ12879 1464 aa15.41■□□□□ 0.06
HDAC9-225ENST00000490851 MAGI1Q96QZ7 1491 aaPredicted RBP15.4■□□□□ 0.06
HDAC9-225ENST00000490851 PCF11O94913 1555 aaKnown RBP15.4■□□□□ 0.06
HDAC9-225ENST00000490851 IQGAP2Q13576 1575 aa15.39■□□□□ 0.06
HDAC9-225ENST00000490851 SYNJ2O15056 1496 aa15.38■□□□□ 0.05
HDAC9-225ENST00000490851 SAMD9Q5K651 1589 aa15.37■□□□□ 0.05
HDAC9-225ENST00000490851 FMN1Q68DA7 1419 aa15.33■□□□□ 0.04
HDAC9-225ENST00000490851 TIAM1Q13009 1591 aa15.33■□□□□ 0.04
HDAC9-225ENST00000490851 HNRNPUL2Q1KMD3 747 aaKnown RBP15.32■□□□□ 0.04
HDAC9-225ENST00000490851 KIAA0586Q9BVV6 1533 aa15.32■□□□□ 0.04
HDAC9-225ENST00000490851 CEP170Q5SW79 1584 aa15.32■□□□□ 0.04
HDAC9-225ENST00000490851 CASKIN1Q8WXD9 1431 aa15.31■□□□□ 0.04
HDAC9-225ENST00000490851 FYCO1Q9BQS8 1478 aa15.31■□□□□ 0.04
HDAC9-225ENST00000490851 UGGT2Q9NYU1 1516 aa15.28■□□□□ 0.04
HDAC9-225ENST00000490851 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.27■□□□□ 0.04
HDAC9-225ENST00000490851 ARID3CA6NKF2 412 aa15.27■□□□□ 0.03
HDAC9-225ENST00000490851 LRRC9Q6ZRR7 1453 aa15.27■□□□□ 0.03
HDAC9-225ENST00000490851 CFAP43Q8NDM7 1665 aa15.26■□□□□ 0.03
HDAC9-225ENST00000490851 MAP3K1Q13233 1512 aa15.25■□□□□ 0.03
HDAC9-225ENST00000490851 DISP1Q96F81 1524 aa15.24■□□□□ 0.03
HDAC9-225ENST00000490851 NUP160Q12769 1436 aa15.24■□□□□ 0.03
HDAC9-225ENST00000490851 KIAA0556O60303 1618 aa15.23■□□□□ 0.03
HDAC9-225ENST00000490851 CHD1O14646 1710 aa15.22■□□□□ 0.03
HDAC9-225ENST00000490851 LRRIQ1Q96JM4 1722 aa15.22■□□□□ 0.03
HDAC9-225ENST00000490851 JPH4Q96JJ6 628 aa15.21■□□□□ 0.03
HDAC9-225ENST00000490851 CCER1Q8TC90 406 aaPredicted RBP15.21■□□□□ 0.02
HDAC9-225ENST00000490851 ITGAEP38570 1179 aa15.19■□□□□ 0.02
HDAC9-225ENST00000490851 MTUS2Q5JR59 1369 aa15.19■□□□□ 0.02
HDAC9-225ENST00000490851 PHLDB1Q86UU1 1377 aa15.18■□□□□ 0.02
HDAC9-225ENST00000490851 HECW1Q76N89 1606 aa15.17■□□□□ 0.02
HDAC9-225ENST00000490851 CCNB3Q8WWL7 1395 aa15.17■□□□□ 0.02
HDAC9-225ENST00000490851 RRBP1Q9P2E9 1410 aaKnown RBP15.17■□□□□ 0.02
HDAC9-225ENST00000490851 CDK13Q14004 1512 aaKnown RBP15.16■□□□□ 0.02
HDAC9-225ENST00000490851 CARMIL2Q6F5E8 1435 aa15.15■□□□□ 0.02
HDAC9-225ENST00000490851 FAM50AQ14320 339 aaKnown RBP15.14■□□□□ 0.01
HDAC9-225ENST00000490851 EPRSP07814 1512 aaKnown RBP15.13■□□□□ 0.01
HDAC9-225ENST00000490851 CCDC18Q5T9S5 1454 aa15.13■□□□□ 0.01
HDAC9-225ENST00000490851 PRG4Q92954 1404 aaPredicted RBP15.11■□□□□ 0.01
HDAC9-225ENST00000490851 MAGI3Q5TCQ9 1506 aa15.11■□□□□ 0.01
HDAC9-225ENST00000490851 PLB1Q6P1J6 1458 aa15.11■□□□□ 0.01
HDAC9-225ENST00000490851 RAPGEF6Q8TEU7 1601 aa15.1■□□□□ 0.01
HDAC9-225ENST00000490851 ZEB1P37275 1124 aaPredicted RBP15.09■□□□□ 0.01
HDAC9-225ENST00000490851 NUP153P49790 1475 aaKnown RBP15.09■□□□□ 0.01
HDAC9-225ENST00000490851 EHBP1L1Q8N3D4 1523 aa15.08■□□□□ 0
HDAC9-225ENST00000490851 NCOA2Q15596 1464 aa15.08■□□□□ 0
HDAC9-225ENST00000490851 BCL11AQ9H165 835 aa15.07■□□□□ 0
HDAC9-225ENST00000490851 SUPT6HQ7KZ85 1726 aaKnown RBP15.06■□□□□ 0
HDAC9-225ENST00000490851 FGD6Q6ZV73 1430 aa15.03■□□□□ -0
HDAC9-225ENST00000490851 PTPRGP23470 1445 aa15.02■□□□□ -0
HDAC9-225ENST00000490851 ERCC6L2Q5T890 1561 aa15.02■□□□□ -0
HDAC9-225ENST00000490851 MYOM3Q5VTT5 1437 aa15.01□□□□□ -0.01
HDAC9-225ENST00000490851 SHROOM2Q13796 1616 aa15□□□□□ -0.01
HDAC9-225ENST00000490851 CDK11AQ9UQ88 783 aaPredicted RBP14.99□□□□□ -0.01
HDAC9-225ENST00000490851 ABCA8O94911 1581 aa14.98□□□□□ -0.01
HDAC9-225ENST00000490851 CLASP1Q7Z460 1538 aa14.98□□□□□ -0.01
HDAC9-225ENST00000490851 ARHGEF11O15085 1522 aa14.96□□□□□ -0.01
HDAC9-225ENST00000490851 PTPN23Q9H3S7 1636 aa14.94□□□□□ -0.02
HDAC9-225ENST00000490851 TROQ12816 1431 aaPredicted RBP14.93□□□□□ -0.02
HDAC9-225ENST00000490851 ATP10BO94823 1461 aa14.93□□□□□ -0.02
HDAC9-225ENST00000490851 RAB3GAP2Q9H2M9 1393 aa14.93□□□□□ -0.02
HDAC9-225ENST00000490851 PLEKHD1A6NEE1 506 aa14.91□□□□□ -0.02
HDAC9-225ENST00000490851 KIF14Q15058 1648 aa14.91□□□□□ -0.02
HDAC9-225ENST00000490851 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.91□□□□□ -0.02
HDAC9-225ENST00000490851 UACAQ9BZF9 1416 aa14.91□□□□□ -0.02
HDAC9-225ENST00000490851 SETD5Q9C0A6 1442 aa14.9□□□□□ -0.02
HDAC9-225ENST00000490851 DHX57Q6P158 1386 aaKnown RBP14.89□□□□□ -0.03
HDAC9-225ENST00000490851 PTPRKQ15262 1439 aa14.89□□□□□ -0.03
HDAC9-225ENST00000490851 CHIC2Q9UKJ5 165 aa14.89□□□□□ -0.03
HDAC9-225ENST00000490851 ZNF644Q9H582 1327 aaPredicted RBP14.88□□□□□ -0.03
HDAC9-225ENST00000490851 ZNF777Q9ULD5 760 aaPredicted RBP14.87□□□□□ -0.03
HDAC9-225ENST00000490851 OSCARQ8IYS5 282 aa14.86□□□□□ -0.03
HDAC9-225ENST00000490851 MIA2Q96PC5 1412 aa14.86□□□□□ -0.03
HDAC9-225ENST00000490851 TCOF1Q13428 1488 aaKnown RBP14.85□□□□□ -0.03
HDAC9-225ENST00000490851 CFDP1Q9UEE9 299 aaPredicted RBP14.85□□□□□ -0.03
HDAC9-225ENST00000490851 ABCC2Q92887 1545 aa14.84□□□□□ -0.03
HDAC9-225ENST00000490851 RRP7BPQ9NSQ0 103 aa14.84□□□□□ -0.03
HDAC9-225ENST00000490851 ADCY10Q96PN6 1610 aa14.83□□□□□ -0.04
HDAC9-225ENST00000490851 GPATCH8Q9UKJ3 1502 aaKnown RBP14.82□□□□□ -0.04
HDAC9-225ENST00000490851 EIF5BO60841 1220 aaKnown RBP14.82□□□□□ -0.04
HDAC9-225ENST00000490851 KCNH8Q96L42 1107 aa14.8□□□□□ -0.04
HDAC9-225ENST00000490851 ITSN2Q9NZM3 1697 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms