RNA–Protein interactions for RNA: ENST00000490751.1

LDB1-204, Transcript of LIM domain binding 1, humanhuman

TSL 2

Gene LDB1, Length 762 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-204ENST00000490751 JPH4Q96JJ6 628 aa53.89■■■■■ 6.22
LDB1-204ENST00000490751 TRHP20396 242 aaPredicted RBP53.87■■■■■ 6.21
LDB1-204ENST00000490751 CARMIL1Q5VZK9 1371 aa53.84■■■■■ 6.21
LDB1-204ENST00000490751 KIAA0586Q9BVV6 1533 aa53.78■■■■■ 6.2
LDB1-204ENST00000490751 RAPGEF2Q9Y4G8 1499 aa53.45■■■■■ 6.15
LDB1-204ENST00000490751 IQGAP2Q13576 1575 aa53.4■■■■■ 6.14
LDB1-204ENST00000490751 ADCY10Q96PN6 1610 aa53.22■■■■■ 6.11
LDB1-204ENST00000490751 CARMIL2Q6F5E8 1435 aa53.22■■■■■ 6.11
LDB1-204ENST00000490751 PTPRGP23470 1445 aa53.13■■■■■ 6.1
LDB1-204ENST00000490751 TNIKQ9UKE5 1360 aa53.1■■■■■ 6.09
LDB1-204ENST00000490751 PRXQ9BXM0 1461 aa53.08■■■■■ 6.09
LDB1-204ENST00000490751 NPM1P06748 294 aaKnown RBP eCLIP53.08■■■■■ 6.09
LDB1-204ENST00000490751 CTTNBP2Q8WZ74 1663 aa53.08■■■■■ 6.09
LDB1-204ENST00000490751 DISP1Q96F81 1524 aa53.07■■■■■ 6.09
LDB1-204ENST00000490751 UGGT2Q9NYU1 1516 aa53.07■■■■■ 6.09
LDB1-204ENST00000490751 TTBK1Q5TCY1 1321 aaPredicted RBP53.04■■■■■ 6.08
LDB1-204ENST00000490751 KIF13AQ9H1H9 1805 aa53.02■■■■■ 6.08
LDB1-204ENST00000490751 MAPKBP1O60336 1514 aa53■■■■■ 6.07
LDB1-204ENST00000490751 KIAA0556O60303 1618 aa52.92■■■■■ 6.06
LDB1-204ENST00000490751 ABCC10Q5T3U5 1492 aa52.84■■■■■ 6.05
LDB1-204ENST00000490751 CSRNP3Q8WYN3 585 aa52.82■■■■■ 6.05
LDB1-204ENST00000490751 DIP2BQ9P265 1576 aa52.78■■■■■ 6.04
LDB1-204ENST00000490751 ABCC2Q92887 1545 aa52.78■■■■■ 6.04
LDB1-204ENST00000490751 EEA1Q15075 1411 aa52.76■■■■■ 6.04
LDB1-204ENST00000490751 UACAQ9BZF9 1416 aa52.76■■■■■ 6.04
LDB1-204ENST00000490751 UHRF1BP1LA0JNW5 1464 aa52.75■■■■■ 6.04
LDB1-204ENST00000490751 FAM69CQ0P6D2 419 aa52.74■■■■■ 6.03
LDB1-204ENST00000490751 GOLGA3Q08378 1498 aa52.69■■■■■ 6.03
LDB1-204ENST00000490751 FAM9AQ8IZU1 332 aaPredicted RBP52.53■■■■■ 6
LDB1-204ENST00000490751 KDM5BQ9UGL1 1544 aa52.52■■■■■ 6
LDB1-204ENST00000490751 ASXL2Q76L83 1435 aa52.52■■■■■ 6
LDB1-204ENST00000490751 CHIC1Q5VXU3 224 aa52.48■■■■■ 5.99
LDB1-204ENST00000490751 PLB1Q6P1J6 1458 aa52.48■■■■■ 5.99
LDB1-204ENST00000490751 ZCCHC11Q5TAX3 1644 aaKnown RBP52.46■■■■■ 5.99
LDB1-204ENST00000490751 TSPOAP1O95153 1857 aa52.4■■■■■ 5.98
LDB1-204ENST00000490751 ABCA8O94911 1581 aa52.38■■■■■ 5.98
LDB1-204ENST00000490751 KIF21BO75037 1637 aa52.33■■■■■ 5.97
LDB1-204ENST00000490751 GLI2P10070 1586 aa52.31■■■■■ 5.96
LDB1-204ENST00000490751 SAMD9Q5K651 1589 aa52.31■■■■■ 5.96
LDB1-204ENST00000490751 P3H3Q8IVL6 736 aa52.28■■■■■ 5.96
LDB1-204ENST00000490751 EPRSP07814 1512 aaKnown RBP52.21■■■■■ 5.95
LDB1-204ENST00000490751 WDR7Q9Y4E6 1490 aa52.14■■■■■ 5.94
LDB1-204ENST00000490751 KDM6BO15054 1643 aa52.14■■■■■ 5.94
LDB1-204ENST00000490751 PPRC1Q5VV67 1664 aaKnown RBP52.13■■■■■ 5.94
LDB1-204ENST00000490751 RANGAP1P46060 587 aaPredicted RBP52.1■■■■■ 5.93
LDB1-204ENST00000490751 MAP3K4Q9Y6R4 1608 aa52.07■■■■■ 5.93
LDB1-204ENST00000490751 RAPGEF6Q8TEU7 1601 aa51.97■■■■■ 5.91
LDB1-204ENST00000490751 FHOD3Q2V2M9 1422 aa51.97■■■■■ 5.91
LDB1-204ENST00000490751 ARID3CA6NKF2 412 aa51.93■■■■■ 5.9
LDB1-204ENST00000490751 EHMT2Q96KQ7 1210 aa51.93■■■■■ 5.9
LDB1-204ENST00000490751 EFCAB5A4FU69 1503 aa51.92■■■■■ 5.9
LDB1-204ENST00000490751 ATP10BO94823 1461 aa51.92■■■■■ 5.9
LDB1-204ENST00000490751 UBTFP17480 764 aaKnown RBP51.85■■■■■ 5.89
LDB1-204ENST00000490751 KCNH8Q96L42 1107 aa51.85■■■■■ 5.89
LDB1-204ENST00000490751 TEX14Q8IWB6 1497 aa51.85■■■■■ 5.89
LDB1-204ENST00000490751 CFAP43Q8NDM7 1665 aa51.81■■■■■ 5.89
LDB1-204ENST00000490751 NUP153P49790 1475 aaKnown RBP51.75■■■■■ 5.88
LDB1-204ENST00000490751 CD109Q6YHK3 1445 aa51.72■■■■■ 5.87
LDB1-204ENST00000490751 AEBP2Q6ZN18 517 aaPredicted RBP51.7■■■■■ 5.87
LDB1-204ENST00000490751 MAGI3Q5TCQ9 1506 aa51.67■■■■■ 5.86
LDB1-204ENST00000490751 COL17A1Q9UMD9 1497 aaPredicted RBP51.66■■■■■ 5.86
LDB1-204ENST00000490751 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP51.64■■■■■ 5.86
LDB1-204ENST00000490751 HNRNPUL2Q1KMD3 747 aaKnown RBP51.64■■■■■ 5.86
LDB1-204ENST00000490751 ARHGAP35Q9NRY4 1499 aa51.54■■■■■ 5.84
LDB1-204ENST00000490751 ABCA9Q8IUA7 1624 aa51.53■■■■■ 5.84
LDB1-204ENST00000490751 FMN1Q68DA7 1419 aa51.42■■■■■ 5.82
LDB1-204ENST00000490751 PLEKHD1A6NEE1 506 aa51.36■■■■■ 5.81
LDB1-204ENST00000490751 CDK13Q14004 1512 aaKnown RBP51.34■■■■■ 5.81
LDB1-204ENST00000490751 HECW1Q76N89 1606 aa51.32■■■■■ 5.81
LDB1-204ENST00000490751 ARAP3Q8WWN8 1544 aa51.23■■■■■ 5.79
LDB1-204ENST00000490751 ATP1B4Q9UN42 357 aaPredicted RBP51.23■■■■■ 5.79
LDB1-204ENST00000490751 KDM4FA0A1W2PPD8 638 aa51.22■■■■■ 5.79
LDB1-204ENST00000490751 PHLDB1Q86UU1 1377 aa51.18■■■■■ 5.78
LDB1-204ENST00000490751 NEO1Q92859 1461 aa51.16■■■■■ 5.78
LDB1-204ENST00000490751 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP51.16■■■■■ 5.783e-7■■□□□ 12
LDB1-204ENST00000490751 TTC37Q6PGP7 1564 aa51.11■■■■■ 5.77
LDB1-204ENST00000490751 ADGRL1O94910 1474 aa51.05■■■■■ 5.76
LDB1-204ENST00000490751 LRRIQ1Q96JM4 1722 aa51.05■■■■■ 5.76
LDB1-204ENST00000490751 PCF11O94913 1555 aaKnown RBP51■■■■■ 5.75
LDB1-204ENST00000490751 CLIP1P30622 1438 aa50.98■■■■■ 5.75
LDB1-204ENST00000490751 CDK11AQ9UQ88 783 aaPredicted RBP50.97■■■■■ 5.75
LDB1-204ENST00000490751 CFAP74Q9C0B2 1584 aa50.97■■■■■ 5.75
LDB1-204ENST00000490751 FANCAO15360 1455 aa50.95■■■■■ 5.75
LDB1-204ENST00000490751 CASKIN1Q8WXD9 1431 aa50.95■■■■■ 5.75
LDB1-204ENST00000490751 RAPGEF3O95398 923 aa50.94■■■■■ 5.75
LDB1-204ENST00000490751 FRMPD1Q5SYB0 1578 aa50.91■■■■■ 5.74
LDB1-204ENST00000490751 AKNAQ7Z591 1439 aa50.88■■■■■ 5.74
LDB1-204ENST00000490751 TROQ12816 1431 aaPredicted RBP50.87■■■■■ 5.73
LDB1-204ENST00000490751 KIF14Q15058 1648 aa50.87■■■■■ 5.73
LDB1-204ENST00000490751 CCDC18Q5T9S5 1454 aa50.84■■■■■ 5.73
LDB1-204ENST00000490751 PLCH2O75038 1416 aa50.81■■■■■ 5.72
LDB1-204ENST00000490751 MYO5CQ9NQX4 1742 aa50.81■■■■■ 5.72
LDB1-204ENST00000490751 DENND4BO75064 1496 aaPredicted RBP50.8■■■■■ 5.72
LDB1-204ENST00000490751 FYCO1Q9BQS8 1478 aa50.8■■■■■ 5.72
LDB1-204ENST00000490751 RICTORQ6R327 1708 aa50.79■■■■■ 5.72
LDB1-204ENST00000490751 ARHGEF40Q8TER5 1519 aa50.61■■■■■ 5.69
LDB1-204ENST00000490751 EFCAB2Q5VUJ9 269 aa50.6■■■■■ 5.69
LDB1-204ENST00000490751 ZMYM4Q5VZL5 1548 aa50.59■■■■■ 5.69
LDB1-204ENST00000490751 SCAPERQ9BY12 1400 aa50.59■■■■■ 5.69
LDB1-204ENST00000490751 CEP162Q5TB80 1403 aa50.58■■■■■ 5.69
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms