RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 RUSC2Q8N2Y8 1516 aa17.95■□□□□ 0.46
TTC28-207ENST00000490475 IGF1RP08069 1367 aa17.93■□□□□ 0.46
TTC28-207ENST00000490475 KIAA0586Q9BVV6 1533 aa17.92■□□□□ 0.46
TTC28-207ENST00000490475 NPM1P06748 294 aaKnown RBP eCLIP17.87■□□□□ 0.45
TTC28-207ENST00000490475 CARMIL1Q5VZK9 1371 aa17.85■□□□□ 0.45
TTC28-207ENST00000490475 CARMIL2Q6F5E8 1435 aa17.79■□□□□ 0.44
TTC28-207ENST00000490475 MAPKBP1O60336 1514 aa17.78■□□□□ 0.44
TTC28-207ENST00000490475 KIF13AQ9H1H9 1805 aa17.77■□□□□ 0.43
TTC28-207ENST00000490475 ABCC10Q5T3U5 1492 aa17.75■□□□□ 0.43
TTC28-207ENST00000490475 IQGAP2Q13576 1575 aa17.74■□□□□ 0.43
TTC28-207ENST00000490475 ADCY10Q96PN6 1610 aa17.74■□□□□ 0.43
TTC28-207ENST00000490475 PTPRGP23470 1445 aa17.73■□□□□ 0.43
TTC28-207ENST00000490475 TNIKQ9UKE5 1360 aa17.72■□□□□ 0.43
TTC28-207ENST00000490475 RAPGEF2Q9Y4G8 1499 aa17.71■□□□□ 0.43
TTC28-207ENST00000490475 FAM69CQ0P6D2 419 aa17.71■□□□□ 0.43
TTC28-207ENST00000490475 AEBP2Q6ZN18 517 aaPredicted RBP17.7■□□□□ 0.42
TTC28-207ENST00000490475 DIP2BQ9P265 1576 aa17.66■□□□□ 0.42
TTC28-207ENST00000490475 ABCC2Q92887 1545 aa17.64■□□□□ 0.41
TTC28-207ENST00000490475 UHRF1BP1LA0JNW5 1464 aa17.63■□□□□ 0.41
TTC28-207ENST00000490475 UGGT2Q9NYU1 1516 aa17.62■□□□□ 0.41
TTC28-207ENST00000490475 PLB1Q6P1J6 1458 aa17.61■□□□□ 0.41
TTC28-207ENST00000490475 UACAQ9BZF9 1416 aa17.6■□□□□ 0.41
TTC28-207ENST00000490475 DISP1Q96F81 1524 aa17.59■□□□□ 0.41
TTC28-207ENST00000490475 TTBK1Q5TCY1 1321 aaPredicted RBP17.57■□□□□ 0.4
TTC28-207ENST00000490475 CTTNBP2Q8WZ74 1663 aa17.56■□□□□ 0.4
TTC28-207ENST00000490475 GOLGA3Q08378 1498 aa17.56■□□□□ 0.4
TTC28-207ENST00000490475 KIAA0556O60303 1618 aa17.55■□□□□ 0.4
TTC28-207ENST00000490475 ASXL2Q76L83 1435 aa17.55■□□□□ 0.4
TTC28-207ENST00000490475 FAM9AQ8IZU1 332 aaPredicted RBP17.54■□□□□ 0.4
TTC28-207ENST00000490475 KDM6BO15054 1643 aa17.54■□□□□ 0.4
TTC28-207ENST00000490475 GLI2P10070 1586 aa17.53■□□□□ 0.4
TTC28-207ENST00000490475 KDM5BQ9UGL1 1544 aa17.52■□□□□ 0.4
TTC28-207ENST00000490475 TSPOAP1O95153 1857 aa17.52■□□□□ 0.4
TTC28-207ENST00000490475 PRXQ9BXM0 1461 aa17.5■□□□□ 0.39
TTC28-207ENST00000490475 ZCCHC11Q5TAX3 1644 aaKnown RBP17.45■□□□□ 0.38
TTC28-207ENST00000490475 TEX14Q8IWB6 1497 aa17.44■□□□□ 0.38
TTC28-207ENST00000490475 EPRSP07814 1512 aaKnown RBP17.44■□□□□ 0.38
TTC28-207ENST00000490475 EEA1Q15075 1411 aa17.43■□□□□ 0.38
TTC28-207ENST00000490475 MAP3K4Q9Y6R4 1608 aa17.4■□□□□ 0.38
TTC28-207ENST00000490475 WDR7Q9Y4E6 1490 aa17.4■□□□□ 0.38
TTC28-207ENST00000490475 CSRNP3Q8WYN3 585 aa17.4■□□□□ 0.38
TTC28-207ENST00000490475 PPRC1Q5VV67 1664 aaKnown RBP17.39■□□□□ 0.37
TTC28-207ENST00000490475 ABCA8O94911 1581 aa17.39■□□□□ 0.37
TTC28-207ENST00000490475 CFAP43Q8NDM7 1665 aa17.33■□□□□ 0.37
TTC28-207ENST00000490475 MAGI3Q5TCQ9 1506 aa17.31■□□□□ 0.36
TTC28-207ENST00000490475 CD109Q6YHK3 1445 aa17.3■□□□□ 0.36
TTC28-207ENST00000490475 SAMD9Q5K651 1589 aa17.28■□□□□ 0.36
TTC28-207ENST00000490475 KDM4FA0A1W2PPD8 638 aa17.26■□□□□ 0.35
TTC28-207ENST00000490475 KCNH8Q96L42 1107 aa17.26■□□□□ 0.35
TTC28-207ENST00000490475 COL17A1Q9UMD9 1497 aaPredicted RBP17.24■□□□□ 0.35
TTC28-207ENST00000490475 RAPGEF6Q8TEU7 1601 aa17.23■□□□□ 0.35
TTC28-207ENST00000490475 P3H3Q8IVL6 736 aa17.23■□□□□ 0.35
TTC28-207ENST00000490475 PHLDB1Q86UU1 1377 aa17.23■□□□□ 0.35
TTC28-207ENST00000490475 ATP10BO94823 1461 aa17.23■□□□□ 0.35
TTC28-207ENST00000490475 CHIC1Q5VXU3 224 aa17.22■□□□□ 0.35
TTC28-207ENST00000490475 KIF21BO75037 1637 aa17.21■□□□□ 0.35
TTC28-207ENST00000490475 EFCAB5A4FU69 1503 aa17.19■□□□□ 0.34
TTC28-207ENST00000490475 ADGRL1O94910 1474 aa17.18■□□□□ 0.34
TTC28-207ENST00000490475 ABCA9Q8IUA7 1624 aa17.18■□□□□ 0.34
TTC28-207ENST00000490475 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.17■□□□□ 0.34
TTC28-207ENST00000490475 HNRNPUL2Q1KMD3 747 aaKnown RBP17.17■□□□□ 0.34
TTC28-207ENST00000490475 ARAP3Q8WWN8 1544 aa17.16■□□□□ 0.34
TTC28-207ENST00000490475 ARID3CA6NKF2 412 aa17.13■□□□□ 0.33
TTC28-207ENST00000490475 FHOD3Q2V2M9 1422 aa17.13■□□□□ 0.33
TTC28-207ENST00000490475 NUP153P49790 1475 aaKnown RBP17.12■□□□□ 0.33
TTC28-207ENST00000490475 NEO1Q92859 1461 aa17.12■□□□□ 0.33
TTC28-207ENST00000490475 PLEKHD1A6NEE1 506 aa17.12■□□□□ 0.33
TTC28-207ENST00000490475 RANGAP1P46060 587 aaPredicted RBP17.1■□□□□ 0.33
TTC28-207ENST00000490475 UBTFP17480 764 aaKnown RBP17.07■□□□□ 0.32
TTC28-207ENST00000490475 FMN1Q68DA7 1419 aa17.05■□□□□ 0.32
TTC28-207ENST00000490475 CFAP74Q9C0B2 1584 aa17.05■□□□□ 0.32
TTC28-207ENST00000490475 CDK11AQ9UQ88 783 aaPredicted RBP17.01■□□□□ 0.31
TTC28-207ENST00000490475 HECW1Q76N89 1606 aa16.99■□□□□ 0.31
TTC28-207ENST00000490475 RAPGEF3O95398 923 aa16.98■□□□□ 0.31
TTC28-207ENST00000490475 FANCAO15360 1455 aa16.98■□□□□ 0.31
TTC28-207ENST00000490475 DENND4BO75064 1496 aaPredicted RBP16.98■□□□□ 0.31
TTC28-207ENST00000490475 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.97■□□□□ 0.31
TTC28-207ENST00000490475 AKNAQ7Z591 1439 aa16.96■□□□□ 0.31
TTC28-207ENST00000490475 ARHGAP35Q9NRY4 1499 aa16.94■□□□□ 0.3
TTC28-207ENST00000490475 CDK13Q14004 1512 aaKnown RBP16.93■□□□□ 0.3
TTC28-207ENST00000490475 FRMPD1Q5SYB0 1578 aa16.93■□□□□ 0.3
TTC28-207ENST00000490475 HECW2Q9P2P5 1572 aa16.93■□□□□ 0.3
TTC28-207ENST00000490475 ATP1B4Q9UN42 357 aaPredicted RBP16.92■□□□□ 0.3
TTC28-207ENST00000490475 TTC37Q6PGP7 1564 aa16.92■□□□□ 0.3
TTC28-207ENST00000490475 RICTORQ6R327 1708 aa16.92■□□□□ 0.3
TTC28-207ENST00000490475 MAGI2Q86UL8 1455 aa16.92■□□□□ 0.3
TTC28-207ENST00000490475 PLCH2O75038 1416 aa16.91■□□□□ 0.3
TTC28-207ENST00000490475 EHMT2Q96KQ7 1210 aa16.91■□□□□ 0.3
TTC28-207ENST00000490475 ARID4BQ4LE39 1312 aaPredicted RBP16.91■□□□□ 0.3
TTC28-207ENST00000490475 ADAMTSL3P82987 1691 aa16.91■□□□□ 0.3
TTC28-207ENST00000490475 ARHGEF40Q8TER5 1519 aa16.91■□□□□ 0.3
TTC28-207ENST00000490475 CLIP1P30622 1438 aa16.9■□□□□ 0.3
TTC28-207ENST00000490475 ZMYM4Q5VZL5 1548 aa16.9■□□□□ 0.3
TTC28-207ENST00000490475 POGZQ7Z3K3 1410 aa16.89■□□□□ 0.29
TTC28-207ENST00000490475 BCORL1Q5H9F3 1711 aa16.88■□□□□ 0.29
TTC28-207ENST00000490475 EFCAB2Q5VUJ9 269 aa16.88■□□□□ 0.29
TTC28-207ENST00000490475 MYO5CQ9NQX4 1742 aa16.87■□□□□ 0.29
TTC28-207ENST00000490475 KIF14Q15058 1648 aa16.87■□□□□ 0.29
TTC28-207ENST00000490475 TROQ12816 1431 aaPredicted RBP16.87■□□□□ 0.29
TTC28-207ENST00000490475 PTPRMP28827 1452 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms