RNA–Protein interactions for RNA: ENST00000489417.5

SND1-214, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 1,447 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-214ENST00000489417 RANGAP1P46060 587 aaPredicted RBP33.27■■■□□ 2.92
SND1-214ENST00000489417 FBLN2P98095 1184 aa33.26■■■□□ 2.91
SND1-214ENST00000489417 CHD1O14646 1710 aa33.18■■■□□ 2.9
SND1-214ENST00000489417 NUP160Q12769 1436 aa33.18■■■□□ 2.9
SND1-214ENST00000489417 CEP170Q5SW79 1584 aa33.17■■■□□ 2.9
SND1-214ENST00000489417 IQGAP2Q13576 1575 aa33.17■■■□□ 2.9
SND1-214ENST00000489417 KIAA0586Q9BVV6 1533 aa33.15■■■□□ 2.9
SND1-214ENST00000489417 ARHGAP35Q9NRY4 1499 aa33.14■■■□□ 2.9
SND1-214ENST00000489417 EFCAB5A4FU69 1503 aa33.09■■■□□ 2.89
SND1-214ENST00000489417 ARAP1Q96P48 1450 aa33.09■■■□□ 2.89
SND1-214ENST00000489417 SAMD9Q5K651 1589 aa33.02■■■□□ 2.88
SND1-214ENST00000489417 UGGT2Q9NYU1 1516 aa33.01■■■□□ 2.88
SND1-214ENST00000489417 VPS8Q8N3P4 1428 aa33■■■□□ 2.87
SND1-214ENST00000489417 FHOD3Q2V2M9 1422 aa32.92■■■□□ 2.86
SND1-214ENST00000489417 P3H3Q8IVL6 736 aa32.92■■■□□ 2.86
SND1-214ENST00000489417 JPH4Q96JJ6 628 aa32.85■■■□□ 2.85
SND1-214ENST00000489417 DISP1Q96F81 1524 aa32.85■■■□□ 2.85
SND1-214ENST00000489417 KIAA0556O60303 1618 aa32.83■■■□□ 2.85
SND1-214ENST00000489417 CLASP1Q7Z460 1538 aa32.83■■■□□ 2.85
SND1-214ENST00000489417 SHROOM2Q13796 1616 aa32.77■■■□□ 2.84
SND1-214ENST00000489417 FMN1Q68DA7 1419 aa32.77■■■□□ 2.84
SND1-214ENST00000489417 CARMIL2Q6F5E8 1435 aa32.76■■■□□ 2.83
SND1-214ENST00000489417 PCF11O94913 1555 aaKnown RBP32.7■■■□□ 2.83
SND1-214ENST00000489417 PRG4Q92954 1404 aaPredicted RBP32.7■■■□□ 2.83
SND1-214ENST00000489417 OSCARQ8IYS5 282 aa32.66■■■□□ 2.82
SND1-214ENST00000489417 CASKIN1Q8WXD9 1431 aa32.65■■■□□ 2.82
SND1-214ENST00000489417 FYCO1Q9BQS8 1478 aa32.65■■■□□ 2.82
SND1-214ENST00000489417 APLP2Q06481 763 aa32.63■■■□□ 2.81
SND1-214ENST00000489417 ERCC6L2Q5T890 1561 aa32.54■■■□□ 2.8
SND1-214ENST00000489417 PPARGC1BQ86YN6 1023 aaKnown RBP32.53■■■□□ 2.8
SND1-214ENST00000489417 TTBK1Q5TCY1 1321 aaPredicted RBP32.52■■■□□ 2.8
SND1-214ENST00000489417 MAP3K1Q13233 1512 aa32.52■■■□□ 2.8
SND1-214ENST00000489417 ATP1B4Q9UN42 357 aaPredicted RBP32.51■■■□□ 2.8
SND1-214ENST00000489417 HECW1Q76N89 1606 aa32.5■■■□□ 2.79
SND1-214ENST00000489417 TIAM1Q13009 1591 aa32.49■■■□□ 2.79
SND1-214ENST00000489417 RAPGEF6Q8TEU7 1601 aa32.47■■■□□ 2.79
SND1-214ENST00000489417 CFAP43Q8NDM7 1665 aa32.47■■■□□ 2.79
SND1-214ENST00000489417 PTPRGP23470 1445 aa32.45■■■□□ 2.79
SND1-214ENST00000489417 PLB1Q6P1J6 1458 aa32.41■■■□□ 2.78
SND1-214ENST00000489417 LRRIQ1Q96JM4 1722 aa32.41■■■□□ 2.78
SND1-214ENST00000489417 ABCA8O94911 1581 aa32.4■■■□□ 2.78
SND1-214ENST00000489417 CCDC18Q5T9S5 1454 aa32.39■■■□□ 2.78
SND1-214ENST00000489417 KANK4Q5T7N3 995 aaPredicted RBP32.36■■■□□ 2.77
SND1-214ENST00000489417 NUP153P49790 1475 aaKnown RBP32.36■■■□□ 2.77
SND1-214ENST00000489417 EPRSP07814 1512 aaKnown RBP32.35■■■□□ 2.77
SND1-214ENST00000489417 LRRC9Q6ZRR7 1453 aa32.33■■■□□ 2.77
SND1-214ENST00000489417 CDK13Q14004 1512 aaKnown RBP32.28■■■□□ 2.76
SND1-214ENST00000489417 UACAQ9BZF9 1416 aa32.28■■■□□ 2.76
SND1-214ENST00000489417 TRIM26Q12899 539 aaPredicted RBP32.26■■■□□ 2.75
SND1-214ENST00000489417 ARID3CA6NKF2 412 aa32.22■■■□□ 2.75
SND1-214ENST00000489417 ABCC2Q92887 1545 aa32.2■■■□□ 2.75
SND1-214ENST00000489417 MTUS2Q5JR59 1369 aa32.2■■■□□ 2.75
SND1-214ENST00000489417 DNAJC5Q9H3Z4 198 aa32.18■■■□□ 2.74
SND1-214ENST00000489417 EHBP1L1Q8N3D4 1523 aa32.18■■■□□ 2.74
SND1-214ENST00000489417 UHRF1BP1LA0JNW5 1464 aa32.17■■■□□ 2.74
SND1-214ENST00000489417 MAGI3Q5TCQ9 1506 aa32.16■■■□□ 2.74
SND1-214ENST00000489417 ARHGEF11O15085 1522 aa32.14■■■□□ 2.74
SND1-214ENST00000489417 ATP10BO94823 1461 aa32.14■■■□□ 2.74
SND1-214ENST00000489417 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.13■■■□□ 2.73
SND1-214ENST00000489417 HNRNPUL2Q1KMD3 747 aaKnown RBP32.13■■■□□ 2.73
SND1-214ENST00000489417 CDK11AQ9UQ88 783 aaPredicted RBP32.09■■■□□ 2.73
SND1-214ENST00000489417 PCGF6Q9BYE7 350 aa32.09■■■□□ 2.73
SND1-214ENST00000489417 SUPT6HQ7KZ85 1726 aaKnown RBP32.05■■■□□ 2.72
SND1-214ENST00000489417 ADCY10Q96PN6 1610 aa32.03■■■□□ 2.72
SND1-214ENST00000489417 TROQ12816 1431 aaPredicted RBP32.02■■■□□ 2.72
SND1-214ENST00000489417 RIMBP3CA6NJZ7 1639 aa32.02■■■□□ 2.72
SND1-214ENST00000489417 RIMBP3BA6NNM3 1639 aa32.02■■■□□ 2.72
SND1-214ENST00000489417 RIMBP3Q9UFD9 1639 aa32.02■■■□□ 2.72
SND1-214ENST00000489417 KDM5BQ9UGL1 1544 aa32.01■■■□□ 2.71
SND1-214ENST00000489417 NCOA2Q15596 1464 aa32■■■□□ 2.71
SND1-214ENST00000489417 PHLDB1Q86UU1 1377 aa31.99■■■□□ 2.71
SND1-214ENST00000489417 ZCCHC11Q5TAX3 1644 aaKnown RBP31.98■■■□□ 2.71
SND1-214ENST00000489417 PLEKHD1A6NEE1 506 aa31.96■■■□□ 2.71
SND1-214ENST00000489417 RRBP1Q9P2E9 1410 aaKnown RBP31.93■■■□□ 2.7
SND1-214ENST00000489417 KIF14Q15058 1648 aa31.86■■■□□ 2.69
SND1-214ENST00000489417 MYOM3Q5VTT5 1437 aa31.86■■■□□ 2.69
SND1-214ENST00000489417 CCNB3Q8WWL7 1395 aa31.86■■■□□ 2.69
SND1-214ENST00000489417 FGD6Q6ZV73 1430 aa31.81■■■□□ 2.68
SND1-214ENST00000489417 CYB5RLQ6IPT4 315 aa31.79■■■□□ 2.68
SND1-214ENST00000489417 NPM1P06748 294 aaKnown RBP eCLIP31.77■■■□□ 2.68
SND1-214ENST00000489417 ABCC10Q5T3U5 1492 aa31.76■■■□□ 2.68
SND1-214ENST00000489417 MIA2Q96PC5 1412 aa31.73■■■□□ 2.67
SND1-214ENST00000489417 WDR7Q9Y4E6 1490 aa31.72■■■□□ 2.67
SND1-214ENST00000489417 ITSN2Q9NZM3 1697 aa31.71■■■□□ 2.67
SND1-214ENST00000489417 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.71■■■□□ 2.67
SND1-214ENST00000489417 PTPN23Q9H3S7 1636 aa31.69■■■□□ 2.66
SND1-214ENST00000489417 GPATCH8Q9UKJ3 1502 aaKnown RBP31.69■■■□□ 2.66
SND1-214ENST00000489417 ASXL2Q76L83 1435 aa31.69■■■□□ 2.66
SND1-214ENST00000489417 FAM50AQ14320 339 aaKnown RBP31.68■■■□□ 2.66
SND1-214ENST00000489417 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.67■■■□□ 2.663e-6■■□□□ 13.8
SND1-214ENST00000489417 TCOF1Q13428 1488 aaKnown RBP31.66■■■□□ 2.66
SND1-214ENST00000489417 KCNH8Q96L42 1107 aa31.66■■■□□ 2.66
SND1-214ENST00000489417 CDC42BPAQ5VT25 1732 aa31.64■■■□□ 2.66
SND1-214ENST00000489417 TTC37Q6PGP7 1564 aa31.64■■■□□ 2.66
SND1-214ENST00000489417 CFDP1Q9UEE9 299 aaPredicted RBP31.58■■■□□ 2.65
SND1-214ENST00000489417 PREX2Q70Z35 1606 aa31.58■■■□□ 2.65
SND1-214ENST00000489417 MAPKBP1O60336 1514 aa31.57■■■□□ 2.64
SND1-214ENST00000489417 ITGAEP38570 1179 aa31.54■■■□□ 2.64
SND1-214ENST00000489417 MYO5CQ9NQX4 1742 aa31.54■■■□□ 2.64
SND1-214ENST00000489417 ABCA9Q8IUA7 1624 aa31.51■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms