RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 KIF27Q86VH2 1401 aa21.8■■□□□ 1.08
CPSF3-204ENST00000489403 IGF1RP08069 1367 aa21.8■■□□□ 1.08
CPSF3-204ENST00000489403 KIF13AQ9H1H9 1805 aa21.78■■□□□ 1.08
CPSF3-204ENST00000489403 KIAA0586Q9BVV6 1533 aa21.75■■□□□ 1.07
CPSF3-204ENST00000489403 AEBP2Q6ZN18 517 aaPredicted RBP21.73■■□□□ 1.07
CPSF3-204ENST00000489403 ADCY10Q96PN6 1610 aa21.71■■□□□ 1.07
CPSF3-204ENST00000489403 MAPKBP1O60336 1514 aa21.67■■□□□ 1.06
CPSF3-204ENST00000489403 CARMIL1Q5VZK9 1371 aa21.65■■□□□ 1.06
CPSF3-204ENST00000489403 ABCC10Q5T3U5 1492 aa21.64■■□□□ 1.06
CPSF3-204ENST00000489403 NPM1P06748 294 aaKnown RBP eCLIP21.63■■□□□ 1.05
CPSF3-204ENST00000489403 DIP2BQ9P265 1576 aa21.62■■□□□ 1.05
CPSF3-204ENST00000489403 FAM69CQ0P6D2 419 aa21.6■■□□□ 1.05
CPSF3-204ENST00000489403 IQGAP2Q13576 1575 aa21.56■■□□□ 1.04
CPSF3-204ENST00000489403 PTPRGP23470 1445 aa21.55■■□□□ 1.04
CPSF3-204ENST00000489403 TNIKQ9UKE5 1360 aa21.52■■□□□ 1.04
CPSF3-204ENST00000489403 CARMIL2Q6F5E8 1435 aa21.52■■□□□ 1.04
CPSF3-204ENST00000489403 TTBK1Q5TCY1 1321 aaPredicted RBP21.49■■□□□ 1.03
CPSF3-204ENST00000489403 RAPGEF2Q9Y4G8 1499 aa21.47■■□□□ 1.03
CPSF3-204ENST00000489403 DISP1Q96F81 1524 aa21.47■■□□□ 1.03
CPSF3-204ENST00000489403 ABCC2Q92887 1545 aa21.46■■□□□ 1.03
CPSF3-204ENST00000489403 TSPOAP1O95153 1857 aa21.46■■□□□ 1.03
CPSF3-204ENST00000489403 CHIC1Q5VXU3 224 aa21.44■■□□□ 1.02
CPSF3-204ENST00000489403 KDM6BO15054 1643 aa21.44■■□□□ 1.02
CPSF3-204ENST00000489403 UHRF1BP1LA0JNW5 1464 aa21.42■■□□□ 1.02
CPSF3-204ENST00000489403 UGGT2Q9NYU1 1516 aa21.42■■□□□ 1.02
CPSF3-204ENST00000489403 ASXL2Q76L83 1435 aa21.39■■□□□ 1.02
CPSF3-204ENST00000489403 UACAQ9BZF9 1416 aa21.39■■□□□ 1.02
CPSF3-204ENST00000489403 KIAA0556O60303 1618 aa21.39■■□□□ 1.01
CPSF3-204ENST00000489403 PLB1Q6P1J6 1458 aa21.37■■□□□ 1.01
CPSF3-204ENST00000489403 GLI2P10070 1586 aa21.36■■□□□ 1.01
CPSF3-204ENST00000489403 PPRC1Q5VV67 1664 aaKnown RBP21.34■■□□□ 1.01
CPSF3-204ENST00000489403 CTTNBP2Q8WZ74 1663 aa21.34■■□□□ 1.01
CPSF3-204ENST00000489403 KDM5BQ9UGL1 1544 aa21.33■■□□□ 1
CPSF3-204ENST00000489403 ZCCHC11Q5TAX3 1644 aaKnown RBP21.31■■□□□ 1
CPSF3-204ENST00000489403 EPRSP07814 1512 aaKnown RBP21.27■■□□□ 1
CPSF3-204ENST00000489403 MAP3K4Q9Y6R4 1608 aa21.26■□□□□ 0.99
CPSF3-204ENST00000489403 PRXQ9BXM0 1461 aa21.25■□□□□ 0.99
CPSF3-204ENST00000489403 GOLGA3Q08378 1498 aa21.21■□□□□ 0.99
CPSF3-204ENST00000489403 KDM4FA0A1W2PPD8 638 aa21.21■□□□□ 0.99
CPSF3-204ENST00000489403 WDR7Q9Y4E6 1490 aa21.19■□□□□ 0.98
CPSF3-204ENST00000489403 ABCA8O94911 1581 aa21.19■□□□□ 0.98
CPSF3-204ENST00000489403 COL17A1Q9UMD9 1497 aaPredicted RBP21.16■□□□□ 0.98
CPSF3-204ENST00000489403 TEX14Q8IWB6 1497 aa21.15■□□□□ 0.98
CPSF3-204ENST00000489403 CFAP43Q8NDM7 1665 aa21.09■□□□□ 0.97
CPSF3-204ENST00000489403 ADGRL1O94910 1474 aa21.05■□□□□ 0.96
CPSF3-204ENST00000489403 MAGI3Q5TCQ9 1506 aa21.04■□□□□ 0.96
CPSF3-204ENST00000489403 CD109Q6YHK3 1445 aa21.04■□□□□ 0.96
CPSF3-204ENST00000489403 SAMD9Q5K651 1589 aa21.02■□□□□ 0.96
CPSF3-204ENST00000489403 CSRNP3Q8WYN3 585 aa21.02■□□□□ 0.96
CPSF3-204ENST00000489403 KCNH8Q96L42 1107 aa21.02■□□□□ 0.96
CPSF3-204ENST00000489403 P3H3Q8IVL6 736 aa21.01■□□□□ 0.95
CPSF3-204ENST00000489403 ATP10BO94823 1461 aa20.98■□□□□ 0.95
CPSF3-204ENST00000489403 ARID3CA6NKF2 412 aa20.97■□□□□ 0.95
CPSF3-204ENST00000489403 EEA1Q15075 1411 aa20.95■□□□□ 0.95
CPSF3-204ENST00000489403 RAPGEF6Q8TEU7 1601 aa20.95■□□□□ 0.94
CPSF3-204ENST00000489403 FAM9AQ8IZU1 332 aaPredicted RBP20.94■□□□□ 0.94
CPSF3-204ENST00000489403 ABCA9Q8IUA7 1624 aa20.91■□□□□ 0.94
CPSF3-204ENST00000489403 ARAP3Q8WWN8 1544 aa20.88■□□□□ 0.93
CPSF3-204ENST00000489403 FHOD3Q2V2M9 1422 aa20.87■□□□□ 0.93
CPSF3-204ENST00000489403 NUP153P49790 1475 aaKnown RBP20.86■□□□□ 0.93
CPSF3-204ENST00000489403 KIF21BO75037 1637 aa20.85■□□□□ 0.93
CPSF3-204ENST00000489403 RANGAP1P46060 587 aaPredicted RBP20.84■□□□□ 0.93
CPSF3-204ENST00000489403 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.8■□□□□ 0.92
CPSF3-204ENST00000489403 HNRNPUL2Q1KMD3 747 aaKnown RBP20.8■□□□□ 0.92
CPSF3-204ENST00000489403 HECW2Q9P2P5 1572 aa20.8■□□□□ 0.92
CPSF3-204ENST00000489403 PHLDB1Q86UU1 1377 aa20.79■□□□□ 0.92
CPSF3-204ENST00000489403 EFCAB5A4FU69 1503 aa20.78■□□□□ 0.92
CPSF3-204ENST00000489403 NEO1Q92859 1461 aa20.78■□□□□ 0.92
CPSF3-204ENST00000489403 FRMPD1Q5SYB0 1578 aa20.76■□□□□ 0.91
CPSF3-204ENST00000489403 RAPGEF3O95398 923 aa20.73■□□□□ 0.91
CPSF3-204ENST00000489403 PLEKHD1A6NEE1 506 aa20.7■□□□□ 0.9
CPSF3-204ENST00000489403 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.68■□□□□ 0.9
CPSF3-204ENST00000489403 ADAMTSL3P82987 1691 aa20.67■□□□□ 0.9
CPSF3-204ENST00000489403 CDK13Q14004 1512 aaKnown RBP20.67■□□□□ 0.9
CPSF3-204ENST00000489403 TTC37Q6PGP7 1564 aa20.67■□□□□ 0.9
CPSF3-204ENST00000489403 CFAP74Q9C0B2 1584 aa20.66■□□□□ 0.9
CPSF3-204ENST00000489403 RICTORQ6R327 1708 aa20.66■□□□□ 0.9
CPSF3-204ENST00000489403 BCORL1Q5H9F3 1711 aa20.64■□□□□ 0.89
CPSF3-204ENST00000489403 FANCAO15360 1455 aa20.63■□□□□ 0.89
CPSF3-204ENST00000489403 DENND4BO75064 1496 aaPredicted RBP20.63■□□□□ 0.89
CPSF3-204ENST00000489403 AKNAQ7Z591 1439 aa20.63■□□□□ 0.89
CPSF3-204ENST00000489403 ARHGEF40Q8TER5 1519 aa20.63■□□□□ 0.89
CPSF3-204ENST00000489403 EHMT2Q96KQ7 1210 aa20.62■□□□□ 0.89
CPSF3-204ENST00000489403 PTPRMP28827 1452 aa20.62■□□□□ 0.89
CPSF3-204ENST00000489403 UBTFP17480 764 aaKnown RBP20.6■□□□□ 0.89
CPSF3-204ENST00000489403 ARHGAP35Q9NRY4 1499 aa20.6■□□□□ 0.89
CPSF3-204ENST00000489403 ILDR1Q86SU0 546 aaPredicted RBP20.59■□□□□ 0.89
CPSF3-204ENST00000489403 HECW1Q76N89 1606 aa20.59■□□□□ 0.89
CPSF3-204ENST00000489403 MADDQ8WXG6 1647 aa20.58■□□□□ 0.89
CPSF3-204ENST00000489403 FMN1Q68DA7 1419 aa20.58■□□□□ 0.88
CPSF3-204ENST00000489403 ZMYM4Q5VZL5 1548 aa20.57■□□□□ 0.88
CPSF3-204ENST00000489403 ARID4BQ4LE39 1312 aaPredicted RBP20.55■□□□□ 0.88
CPSF3-204ENST00000489403 PLCH2O75038 1416 aa20.53■□□□□ 0.88
CPSF3-204ENST00000489403 SIGLEC1Q9BZZ2 1709 aa20.52■□□□□ 0.88
CPSF3-204ENST00000489403 ZFYVE16Q7Z3T8 1539 aa20.52■□□□□ 0.87
CPSF3-204ENST00000489403 RIMS1Q86UR5 1692 aaKnown RBP20.51■□□□□ 0.87
CPSF3-204ENST00000489403 ATP1B4Q9UN42 357 aaPredicted RBP20.51■□□□□ 0.87
CPSF3-204ENST00000489403 YEATS2Q9ULM3 1422 aa20.51■□□□□ 0.87
CPSF3-204ENST00000489403 MYO5CQ9NQX4 1742 aa20.5■□□□□ 0.87
CPSF3-204ENST00000489403 LRRIQ1Q96JM4 1722 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms