RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 PRG4Q92954 1404 aaPredicted RBP39.74■■■■□ 3.95
COL9A3-213ENST00000489045 JPH4Q96JJ6 628 aa39.69■■■■□ 3.94
COL9A3-213ENST00000489045 CARMIL1Q5VZK9 1371 aa39.62■■■■□ 3.93
COL9A3-213ENST00000489045 KIAA0586Q9BVV6 1533 aa39.62■■■■□ 3.93
COL9A3-213ENST00000489045 IQGAP2Q13576 1575 aa39.37■■■■□ 3.89
COL9A3-213ENST00000489045 RAPGEF2Q9Y4G8 1499 aa39.34■■■■□ 3.89
COL9A3-213ENST00000489045 ADCY10Q96PN6 1610 aa39.3■■■■□ 3.88
COL9A3-213ENST00000489045 KIF13AQ9H1H9 1805 aa39.23■■■■□ 3.87
COL9A3-213ENST00000489045 CARMIL2Q6F5E8 1435 aa39.2■■■■□ 3.87
COL9A3-213ENST00000489045 PTPRGP23470 1445 aa39.14■■■■□ 3.86
COL9A3-213ENST00000489045 MAPKBP1O60336 1514 aa39.14■■■■□ 3.86
COL9A3-213ENST00000489045 NPM1P06748 294 aaKnown RBP eCLIP39.13■■■■□ 3.85
COL9A3-213ENST00000489045 CTTNBP2Q8WZ74 1663 aa39.13■■■■□ 3.85
COL9A3-213ENST00000489045 TNIKQ9UKE5 1360 aa39.12■■■■□ 3.85
COL9A3-213ENST00000489045 DISP1Q96F81 1524 aa39.11■■■■□ 3.85
COL9A3-213ENST00000489045 UGGT2Q9NYU1 1516 aa39.1■■■■□ 3.85
COL9A3-213ENST00000489045 TTBK1Q5TCY1 1321 aaPredicted RBP39.08■■■■□ 3.85
COL9A3-213ENST00000489045 PRXQ9BXM0 1461 aa39.04■■■■□ 3.84
COL9A3-213ENST00000489045 ABCC10Q5T3U5 1492 aa39.02■■■■□ 3.84
COL9A3-213ENST00000489045 KIAA0556O60303 1618 aa39■■■■□ 3.83
COL9A3-213ENST00000489045 DIP2BQ9P265 1576 aa38.99■■■■□ 3.83
COL9A3-213ENST00000489045 ABCC2Q92887 1545 aa38.93■■■■□ 3.82
COL9A3-213ENST00000489045 FAM69CQ0P6D2 419 aa38.92■■■■□ 3.82
COL9A3-213ENST00000489045 UHRF1BP1LA0JNW5 1464 aa38.9■■■■□ 3.82
COL9A3-213ENST00000489045 UACAQ9BZF9 1416 aa38.89■■■■□ 3.82
COL9A3-213ENST00000489045 GOLGA3Q08378 1498 aa38.79■■■■□ 3.8
COL9A3-213ENST00000489045 CSRNP3Q8WYN3 585 aa38.78■■■■□ 3.8
COL9A3-213ENST00000489045 TSPOAP1O95153 1857 aa38.75■■■■□ 3.79
COL9A3-213ENST00000489045 EEA1Q15075 1411 aa38.74■■■■□ 3.79
COL9A3-213ENST00000489045 ASXL2Q76L83 1435 aa38.74■■■■□ 3.79
COL9A3-213ENST00000489045 KDM5BQ9UGL1 1544 aa38.73■■■■□ 3.79
COL9A3-213ENST00000489045 ZCCHC11Q5TAX3 1644 aaKnown RBP38.72■■■■□ 3.79
COL9A3-213ENST00000489045 PLB1Q6P1J6 1458 aa38.71■■■■□ 3.79
COL9A3-213ENST00000489045 GLI2P10070 1586 aa38.61■■■■□ 3.77
COL9A3-213ENST00000489045 ABCA8O94911 1581 aa38.61■■■■□ 3.77
COL9A3-213ENST00000489045 FAM9AQ8IZU1 332 aaPredicted RBP38.55■■■■□ 3.76
COL9A3-213ENST00000489045 KDM6BO15054 1643 aa38.55■■■■□ 3.76
COL9A3-213ENST00000489045 SAMD9Q5K651 1589 aa38.53■■■■□ 3.76
COL9A3-213ENST00000489045 PPRC1Q5VV67 1664 aaKnown RBP38.53■■■■□ 3.76
COL9A3-213ENST00000489045 EPRSP07814 1512 aaKnown RBP38.52■■■■□ 3.76
COL9A3-213ENST00000489045 KIF21BO75037 1637 aa38.48■■■■□ 3.75
COL9A3-213ENST00000489045 MAP3K4Q9Y6R4 1608 aa38.46■■■■□ 3.75
COL9A3-213ENST00000489045 P3H3Q8IVL6 736 aa38.46■■■■□ 3.75
COL9A3-213ENST00000489045 WDR7Q9Y4E6 1490 aa38.45■■■■□ 3.75
COL9A3-213ENST00000489045 CHIC1Q5VXU3 224 aa38.44■■■■□ 3.74
COL9A3-213ENST00000489045 RANGAP1P46060 587 aaPredicted RBP38.3■■■■□ 3.72
COL9A3-213ENST00000489045 AEBP2Q6ZN18 517 aaPredicted RBP38.3■■■■□ 3.72
COL9A3-213ENST00000489045 RAPGEF6Q8TEU7 1601 aa38.3■■■■□ 3.72
COL9A3-213ENST00000489045 TEX14Q8IWB6 1497 aa38.26■■■■□ 3.72
COL9A3-213ENST00000489045 CFAP43Q8NDM7 1665 aa38.26■■■■□ 3.71
COL9A3-213ENST00000489045 ATP10BO94823 1461 aa38.24■■■■□ 3.71
COL9A3-213ENST00000489045 FHOD3Q2V2M9 1422 aa38.23■■■■□ 3.71
COL9A3-213ENST00000489045 ARID3CA6NKF2 412 aa38.23■■■■□ 3.71
COL9A3-213ENST00000489045 KCNH8Q96L42 1107 aa38.2■■■■□ 3.71
COL9A3-213ENST00000489045 EFCAB5A4FU69 1503 aa38.2■■■■□ 3.71
COL9A3-213ENST00000489045 EHMT2Q96KQ7 1210 aa38.14■■■■□ 3.7
COL9A3-213ENST00000489045 COL17A1Q9UMD9 1497 aaPredicted RBP38.14■■■■□ 3.7
COL9A3-213ENST00000489045 CD109Q6YHK3 1445 aa38.13■■■■□ 3.7
COL9A3-213ENST00000489045 NUP153P49790 1475 aaKnown RBP38.11■■■■□ 3.69
COL9A3-213ENST00000489045 MAGI3Q5TCQ9 1506 aa38.11■■■■□ 3.69
COL9A3-213ENST00000489045 UBTFP17480 764 aaKnown RBP38.06■■■■□ 3.68
COL9A3-213ENST00000489045 ABCA9Q8IUA7 1624 aa38.02■■■■□ 3.68
COL9A3-213ENST00000489045 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.99■■■■□ 3.67
COL9A3-213ENST00000489045 HNRNPUL2Q1KMD3 747 aaKnown RBP37.99■■■■□ 3.67
COL9A3-213ENST00000489045 ARHGAP35Q9NRY4 1499 aa37.9■■■■□ 3.66
COL9A3-213ENST00000489045 KDM4FA0A1W2PPD8 638 aa37.87■■■■□ 3.65
COL9A3-213ENST00000489045 CDK13Q14004 1512 aaKnown RBP37.82■■■■□ 3.64
COL9A3-213ENST00000489045 FMN1Q68DA7 1419 aa37.81■■■■□ 3.64
COL9A3-213ENST00000489045 ARAP3Q8WWN8 1544 aa37.81■■■■□ 3.64
COL9A3-213ENST00000489045 PLEKHD1A6NEE1 506 aa37.79■■■■□ 3.64
COL9A3-213ENST00000489045 HECW1Q76N89 1606 aa37.79■■■■□ 3.64
COL9A3-213ENST00000489045 ADGRL1O94910 1474 aa37.75■■■■□ 3.63
COL9A3-213ENST00000489045 NEO1Q92859 1461 aa37.72■■■■□ 3.63
COL9A3-213ENST00000489045 PHLDB1Q86UU1 1377 aa37.71■■■■□ 3.63
COL9A3-213ENST00000489045 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP37.71■■■■□ 3.63
COL9A3-213ENST00000489045 TTC37Q6PGP7 1564 aa37.69■■■■□ 3.62
COL9A3-213ENST00000489045 ATP1B4Q9UN42 357 aaPredicted RBP37.66■■■■□ 3.62
COL9A3-213ENST00000489045 LRRIQ1Q96JM4 1722 aa37.63■■■■□ 3.61
COL9A3-213ENST00000489045 CFAP74Q9C0B2 1584 aa37.6■■■■□ 3.61
COL9A3-213ENST00000489045 FRMPD1Q5SYB0 1578 aa37.59■■■■□ 3.61
COL9A3-213ENST00000489045 RAPGEF3O95398 923 aa37.55■■■■□ 3.6
COL9A3-213ENST00000489045 FANCAO15360 1455 aa37.54■■■■□ 3.6
COL9A3-213ENST00000489045 PCF11O94913 1555 aaKnown RBP37.54■■■■□ 3.6
COL9A3-213ENST00000489045 AKNAQ7Z591 1439 aa37.51■■■■□ 3.59
COL9A3-213ENST00000489045 RICTORQ6R327 1708 aa37.5■■■■□ 3.59
COL9A3-213ENST00000489045 KIF14Q15058 1648 aa37.49■■■■□ 3.59
COL9A3-213ENST00000489045 CDK11AQ9UQ88 783 aaPredicted RBP37.48■■■■□ 3.59
COL9A3-213ENST00000489045 MYO5CQ9NQX4 1742 aa37.47■■■■□ 3.59
COL9A3-213ENST00000489045 DENND4BO75064 1496 aaPredicted RBP37.45■■■■□ 3.59
COL9A3-213ENST00000489045 CASKIN1Q8WXD9 1431 aa37.45■■■■□ 3.59
COL9A3-213ENST00000489045 CLIP1P30622 1438 aa37.44■■■■□ 3.58
COL9A3-213ENST00000489045 TROQ12816 1431 aaPredicted RBP37.44■■■■□ 3.58
COL9A3-213ENST00000489045 PLCH2O75038 1416 aa37.42■■■■□ 3.58
COL9A3-213ENST00000489045 CCDC18Q5T9S5 1454 aa37.39■■■■□ 3.58
COL9A3-213ENST00000489045 ARHGEF40Q8TER5 1519 aa37.36■■■■□ 3.57
COL9A3-213ENST00000489045 FYCO1Q9BQS8 1478 aa37.36■■■■□ 3.57
COL9A3-213ENST00000489045 ZMYM4Q5VZL5 1548 aa37.32■■■■□ 3.57
COL9A3-213ENST00000489045 SCAPERQ9BY12 1400 aa37.27■■■■□ 3.56
COL9A3-213ENST00000489045 ADAMTSL3P82987 1691 aa37.26■■■■□ 3.56
COL9A3-213ENST00000489045 POGZQ7Z3K3 1410 aa37.25■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms