RNA–Protein interactions for RNA: ENST00000488921.5

SPTLC1-207, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 3

Gene SPTLC1, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-207ENST00000488921 PRG4Q92954 1404 aaPredicted RBP23.71■■□□□ 1.39
SPTLC1-207ENST00000488921 KIAA0586Q9BVV6 1533 aa23.69■■□□□ 1.38
SPTLC1-207ENST00000488921 TRHP20396 242 aaPredicted RBP23.69■■□□□ 1.38
SPTLC1-207ENST00000488921 CARMIL1Q5VZK9 1371 aa23.68■■□□□ 1.38
SPTLC1-207ENST00000488921 JPH4Q96JJ6 628 aa23.68■■□□□ 1.38
SPTLC1-207ENST00000488921 IQGAP2Q13576 1575 aa23.57■■□□□ 1.36
SPTLC1-207ENST00000488921 RAPGEF2Q9Y4G8 1499 aa23.55■■□□□ 1.36
SPTLC1-207ENST00000488921 CARMIL2Q6F5E8 1435 aa23.48■■□□□ 1.35
SPTLC1-207ENST00000488921 CTTNBP2Q8WZ74 1663 aa23.47■■□□□ 1.35
SPTLC1-207ENST00000488921 ADCY10Q96PN6 1610 aa23.45■■□□□ 1.34
SPTLC1-207ENST00000488921 KIF13AQ9H1H9 1805 aa23.41■■□□□ 1.34
SPTLC1-207ENST00000488921 UGGT2Q9NYU1 1516 aa23.4■■□□□ 1.34
SPTLC1-207ENST00000488921 MAPKBP1O60336 1514 aa23.39■■□□□ 1.34
SPTLC1-207ENST00000488921 TNIKQ9UKE5 1360 aa23.39■■□□□ 1.33
SPTLC1-207ENST00000488921 NPM1P06748 294 aaKnown RBP eCLIP23.38■■□□□ 1.33
SPTLC1-207ENST00000488921 PTPRGP23470 1445 aa23.38■■□□□ 1.33
SPTLC1-207ENST00000488921 PRXQ9BXM0 1461 aa23.36■■□□□ 1.33
SPTLC1-207ENST00000488921 DISP1Q96F81 1524 aa23.35■■□□□ 1.33
SPTLC1-207ENST00000488921 KIAA0556O60303 1618 aa23.34■■□□□ 1.33
SPTLC1-207ENST00000488921 DIP2BQ9P265 1576 aa23.29■■□□□ 1.32
SPTLC1-207ENST00000488921 EEA1Q15075 1411 aa23.28■■□□□ 1.32
SPTLC1-207ENST00000488921 ABCC10Q5T3U5 1492 aa23.28■■□□□ 1.32
SPTLC1-207ENST00000488921 ABCC2Q92887 1545 aa23.27■■□□□ 1.32
SPTLC1-207ENST00000488921 UHRF1BP1LA0JNW5 1464 aa23.26■■□□□ 1.31
SPTLC1-207ENST00000488921 GOLGA3Q08378 1498 aa23.26■■□□□ 1.31
SPTLC1-207ENST00000488921 CHIC1Q5VXU3 224 aa23.26■■□□□ 1.31
SPTLC1-207ENST00000488921 TTBK1Q5TCY1 1321 aaPredicted RBP23.26■■□□□ 1.31
SPTLC1-207ENST00000488921 UACAQ9BZF9 1416 aa23.23■■□□□ 1.31
SPTLC1-207ENST00000488921 CSRNP3Q8WYN3 585 aa23.2■■□□□ 1.3
SPTLC1-207ENST00000488921 FAM69CQ0P6D2 419 aa23.18■■□□□ 1.3
SPTLC1-207ENST00000488921 ZCCHC11Q5TAX3 1644 aaKnown RBP23.15■■□□□ 1.3
SPTLC1-207ENST00000488921 KDM5BQ9UGL1 1544 aa23.14■■□□□ 1.3
SPTLC1-207ENST00000488921 PLB1Q6P1J6 1458 aa23.14■■□□□ 1.29
SPTLC1-207ENST00000488921 TSPOAP1O95153 1857 aa23.12■■□□□ 1.29
SPTLC1-207ENST00000488921 ASXL2Q76L83 1435 aa23.12■■□□□ 1.29
SPTLC1-207ENST00000488921 KIF21BO75037 1637 aa23.1■■□□□ 1.29
SPTLC1-207ENST00000488921 GLI2P10070 1586 aa23.09■■□□□ 1.29
SPTLC1-207ENST00000488921 ABCA8O94911 1581 aa23.08■■□□□ 1.29
SPTLC1-207ENST00000488921 SAMD9Q5K651 1589 aa23.08■■□□□ 1.29
SPTLC1-207ENST00000488921 FAM9AQ8IZU1 332 aaPredicted RBP23.03■■□□□ 1.28
SPTLC1-207ENST00000488921 KDM6BO15054 1643 aa23.02■■□□□ 1.28
SPTLC1-207ENST00000488921 EPRSP07814 1512 aaKnown RBP22.99■■□□□ 1.27
SPTLC1-207ENST00000488921 MAP3K4Q9Y6R4 1608 aa22.99■■□□□ 1.27
SPTLC1-207ENST00000488921 WDR7Q9Y4E6 1490 aa22.98■■□□□ 1.27
SPTLC1-207ENST00000488921 PPRC1Q5VV67 1664 aaKnown RBP22.98■■□□□ 1.27
SPTLC1-207ENST00000488921 RAPGEF6Q8TEU7 1601 aa22.93■■□□□ 1.26
SPTLC1-207ENST00000488921 EFCAB5A4FU69 1503 aa22.93■■□□□ 1.26
SPTLC1-207ENST00000488921 P3H3Q8IVL6 736 aa22.92■■□□□ 1.26
SPTLC1-207ENST00000488921 CFAP43Q8NDM7 1665 aa22.91■■□□□ 1.26
SPTLC1-207ENST00000488921 TEX14Q8IWB6 1497 aa22.9■■□□□ 1.26
SPTLC1-207ENST00000488921 FHOD3Q2V2M9 1422 aa22.84■■□□□ 1.25
SPTLC1-207ENST00000488921 ATP10BO94823 1461 aa22.83■■□□□ 1.25
SPTLC1-207ENST00000488921 RANGAP1P46060 587 aaPredicted RBP22.82■■□□□ 1.24
SPTLC1-207ENST00000488921 MAGI3Q5TCQ9 1506 aa22.78■■□□□ 1.24
SPTLC1-207ENST00000488921 UBTFP17480 764 aaKnown RBP22.78■■□□□ 1.24
SPTLC1-207ENST00000488921 NUP153P49790 1475 aaKnown RBP22.78■■□□□ 1.24
SPTLC1-207ENST00000488921 CD109Q6YHK3 1445 aa22.77■■□□□ 1.24
SPTLC1-207ENST00000488921 KCNH8Q96L42 1107 aa22.76■■□□□ 1.23
SPTLC1-207ENST00000488921 ABCA9Q8IUA7 1624 aa22.75■■□□□ 1.23
SPTLC1-207ENST00000488921 ARID3CA6NKF2 412 aa22.74■■□□□ 1.23
SPTLC1-207ENST00000488921 EHMT2Q96KQ7 1210 aa22.71■■□□□ 1.23
SPTLC1-207ENST00000488921 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.7■■□□□ 1.22
SPTLC1-207ENST00000488921 HNRNPUL2Q1KMD3 747 aaKnown RBP22.7■■□□□ 1.22
SPTLC1-207ENST00000488921 COL17A1Q9UMD9 1497 aaPredicted RBP22.68■■□□□ 1.22
SPTLC1-207ENST00000488921 FMN1Q68DA7 1419 aa22.68■■□□□ 1.22
SPTLC1-207ENST00000488921 ARHGAP35Q9NRY4 1499 aa22.67■■□□□ 1.22
SPTLC1-207ENST00000488921 HECW1Q76N89 1606 aa22.67■■□□□ 1.22
SPTLC1-207ENST00000488921 CDK13Q14004 1512 aaKnown RBP22.59■■□□□ 1.21
SPTLC1-207ENST00000488921 ARAP3Q8WWN8 1544 aa22.59■■□□□ 1.21
SPTLC1-207ENST00000488921 PLEKHD1A6NEE1 506 aa22.59■■□□□ 1.21
SPTLC1-207ENST00000488921 PHLDB1Q86UU1 1377 aa22.59■■□□□ 1.21
SPTLC1-207ENST00000488921 NEO1Q92859 1461 aa22.58■■□□□ 1.2
SPTLC1-207ENST00000488921 CFAP74Q9C0B2 1584 aa22.57■■□□□ 1.2
SPTLC1-207ENST00000488921 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.53■■□□□ 1.2
SPTLC1-207ENST00000488921 TTC37Q6PGP7 1564 aa22.52■■□□□ 1.2
SPTLC1-207ENST00000488921 LRRIQ1Q96JM4 1722 aa22.51■■□□□ 1.19
SPTLC1-207ENST00000488921 ADGRL1O94910 1474 aa22.49■■□□□ 1.19
SPTLC1-207ENST00000488921 KDM4FA0A1W2PPD8 638 aa22.49■■□□□ 1.19
SPTLC1-207ENST00000488921 ATP1B4Q9UN42 357 aaPredicted RBP22.49■■□□□ 1.19
SPTLC1-207ENST00000488921 PCF11O94913 1555 aaKnown RBP22.48■■□□□ 1.19
SPTLC1-207ENST00000488921 CDK11AQ9UQ88 783 aaPredicted RBP22.47■■□□□ 1.19
SPTLC1-207ENST00000488921 KIF14Q15058 1648 aa22.46■■□□□ 1.19
SPTLC1-207ENST00000488921 MYO5CQ9NQX4 1742 aa22.46■■□□□ 1.19
SPTLC1-207ENST00000488921 FANCAO15360 1455 aa22.45■■□□□ 1.18
SPTLC1-207ENST00000488921 CCDC18Q5T9S5 1454 aa22.45■■□□□ 1.18
SPTLC1-207ENST00000488921 CASKIN1Q8WXD9 1431 aa22.44■■□□□ 1.18
SPTLC1-207ENST00000488921 FRMPD1Q5SYB0 1578 aa22.43■■□□□ 1.18
SPTLC1-207ENST00000488921 CLIP1P30622 1438 aa22.43■■□□□ 1.18
SPTLC1-207ENST00000488921 RICTORQ6R327 1708 aa22.43■■□□□ 1.18
SPTLC1-207ENST00000488921 FYCO1Q9BQS8 1478 aa22.41■■□□□ 1.18
SPTLC1-207ENST00000488921 TROQ12816 1431 aaPredicted RBP22.4■■□□□ 1.18
SPTLC1-207ENST00000488921 AKNAQ7Z591 1439 aa22.4■■□□□ 1.18
SPTLC1-207ENST00000488921 DENND4BO75064 1496 aaPredicted RBP22.38■■□□□ 1.17
SPTLC1-207ENST00000488921 PLCH2O75038 1416 aa22.37■■□□□ 1.17
SPTLC1-207ENST00000488921 RAPGEF3O95398 923 aa22.36■■□□□ 1.17
SPTLC1-207ENST00000488921 ARHGEF40Q8TER5 1519 aa22.35■■□□□ 1.17
SPTLC1-207ENST00000488921 ZMYM4Q5VZL5 1548 aa22.34■■□□□ 1.17
SPTLC1-207ENST00000488921 PREX2Q70Z35 1606 aa22.29■■□□□ 1.16
SPTLC1-207ENST00000488921 ARHGAP5Q13017 1502 aa22.29■■□□□ 1.16
SPTLC1-207ENST00000488921 CDC42BPBQ9Y5S2 1711 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms