RNA–Protein interactions for RNA: ENST00000488774.1

PTPRD-212, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 3

Gene PTPRD, Length 420 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-212ENST00000488774 CARMIL1Q5VZK9 1371 aa11.16□□□□□ -0.62
PTPRD-212ENST00000488774 CTTNBP2Q8WZ74 1663 aa11.15□□□□□ -0.62
PTPRD-212ENST00000488774 SENP3Q9H4L4 574 aaPredicted RBP11.15□□□□□ -0.62
PTPRD-212ENST00000488774 PRXQ9BXM0 1461 aa11.12□□□□□ -0.63
PTPRD-212ENST00000488774 RAPGEF2Q9Y4G8 1499 aa11.1□□□□□ -0.63
PTPRD-212ENST00000488774 IQGAP2Q13576 1575 aa11.09□□□□□ -0.63
PTPRD-212ENST00000488774 CYB5RLQ6IPT4 315 aa11.09□□□□□ -0.63
PTPRD-212ENST00000488774 FAM9AQ8IZU1 332 aaPredicted RBP11.09□□□□□ -0.63
PTPRD-212ENST00000488774 KIAA0586Q9BVV6 1533 aa11.09□□□□□ -0.63
PTPRD-212ENST00000488774 PRG4Q92954 1404 aaPredicted RBP11.08□□□□□ -0.64
PTPRD-212ENST00000488774 DISP1Q96F81 1524 aa11.06□□□□□ -0.64
PTPRD-212ENST00000488774 JPH4Q96JJ6 628 aa11.06□□□□□ -0.64
PTPRD-212ENST00000488774 PHF23Q9BUL5 403 aaPredicted RBP11.06□□□□□ -0.64
PTPRD-212ENST00000488774 ADCY10Q96PN6 1610 aa11.04□□□□□ -0.64
PTPRD-212ENST00000488774 KIF21BO75037 1637 aa11.03□□□□□ -0.64
PTPRD-212ENST00000488774 CSRNP3Q8WYN3 585 aa11.03□□□□□ -0.64
PTPRD-212ENST00000488774 UGGT2Q9NYU1 1516 aa11.02□□□□□ -0.65
PTPRD-212ENST00000488774 KIAA0556O60303 1618 aa11.02□□□□□ -0.65
PTPRD-212ENST00000488774 EHMT2Q96KQ7 1210 aa11.01□□□□□ -0.65
PTPRD-212ENST00000488774 KIF13AQ9H1H9 1805 aa10.99□□□□□ -0.65
PTPRD-212ENST00000488774 EEA1Q15075 1411 aa10.97□□□□□ -0.65
PTPRD-212ENST00000488774 SAMD9Q5K651 1589 aa10.97□□□□□ -0.65
PTPRD-212ENST00000488774 TTBK1Q5TCY1 1321 aaPredicted RBP10.95□□□□□ -0.66
PTPRD-212ENST00000488774 ABCC2Q92887 1545 aa10.91□□□□□ -0.66
PTPRD-212ENST00000488774 LRRIQ1Q96JM4 1722 aa10.91□□□□□ -0.66
PTPRD-212ENST00000488774 PLB1Q6P1J6 1458 aa10.91□□□□□ -0.66
PTPRD-212ENST00000488774 ZCCHC11Q5TAX3 1644 aaKnown RBP10.91□□□□□ -0.66
PTPRD-212ENST00000488774 TNIKQ9UKE5 1360 aa10.9□□□□□ -0.66
PTPRD-212ENST00000488774 RANGAP1P46060 587 aaPredicted RBP10.9□□□□□ -0.66
PTPRD-212ENST00000488774 P3H3Q8IVL6 736 aa10.9□□□□□ -0.66
PTPRD-212ENST00000488774 ABCA8O94911 1581 aa10.9□□□□□ -0.67
PTPRD-212ENST00000488774 PTPRGP23470 1445 aa10.89□□□□□ -0.67
PTPRD-212ENST00000488774 GOLGA3Q08378 1498 aa10.88□□□□□ -0.67
PTPRD-212ENST00000488774 TSPOAP1O95153 1857 aa10.87□□□□□ -0.67
PTPRD-212ENST00000488774 FHOD3Q2V2M9 1422 aa10.87□□□□□ -0.67
PTPRD-212ENST00000488774 CARMIL2Q6F5E8 1435 aa10.87□□□□□ -0.67
PTPRD-212ENST00000488774 DIP2BQ9P265 1576 aa10.86□□□□□ -0.67
PTPRD-212ENST00000488774 PPRC1Q5VV67 1664 aaKnown RBP10.85□□□□□ -0.67
PTPRD-212ENST00000488774 UHRF1BP1LA0JNW5 1464 aa10.85□□□□□ -0.67
PTPRD-212ENST00000488774 ARHGAP35Q9NRY4 1499 aa10.85□□□□□ -0.67
PTPRD-212ENST00000488774 UACAQ9BZF9 1416 aa10.84□□□□□ -0.67
PTPRD-212ENST00000488774 MAPKBP1O60336 1514 aa10.84□□□□□ -0.67
PTPRD-212ENST00000488774 RAPGEF6Q8TEU7 1601 aa10.84□□□□□ -0.67
PTPRD-212ENST00000488774 KDM5BQ9UGL1 1544 aa10.83□□□□□ -0.68
PTPRD-212ENST00000488774 LOC105371045A0A1W2PR82 267 aa10.81□□□□□ -0.68
PTPRD-212ENST00000488774 ARID3CA6NKF2 412 aa10.8□□□□□ -0.68
PTPRD-212ENST00000488774 UBTFP17480 764 aaKnown RBP10.8□□□□□ -0.68
PTPRD-212ENST00000488774 NUP153P49790 1475 aaKnown RBP10.8□□□□□ -0.68
PTPRD-212ENST00000488774 EFCAB5A4FU69 1503 aa10.79□□□□□ -0.68
PTPRD-212ENST00000488774 ASXL2Q76L83 1435 aa10.79□□□□□ -0.68
PTPRD-212ENST00000488774 TRHP20396 242 aaPredicted RBP10.79□□□□□ -0.68
PTPRD-212ENST00000488774 ABCC10Q5T3U5 1492 aa10.79□□□□□ -0.68
PTPRD-212ENST00000488774 ATP10BO94823 1461 aa10.78□□□□□ -0.68
PTPRD-212ENST00000488774 CDK13Q14004 1512 aaKnown RBP10.77□□□□□ -0.69
PTPRD-212ENST00000488774 PCF11O94913 1555 aaKnown RBP10.77□□□□□ -0.69
PTPRD-212ENST00000488774 MAP3K4Q9Y6R4 1608 aa10.76□□□□□ -0.69
PTPRD-212ENST00000488774 EPRSP07814 1512 aaKnown RBP10.74□□□□□ -0.69
PTPRD-212ENST00000488774 GLI2P10070 1586 aa10.73□□□□□ -0.69
PTPRD-212ENST00000488774 WDR7Q9Y4E6 1490 aa10.72□□□□□ -0.69
PTPRD-212ENST00000488774 FAM69CQ0P6D2 419 aa10.71□□□□□ -0.69
PTPRD-212ENST00000488774 MAGI3Q5TCQ9 1506 aa10.71□□□□□ -0.69
PTPRD-212ENST00000488774 CLIP1P30622 1438 aa10.7□□□□□ -0.7
PTPRD-212ENST00000488774 KIF14Q15058 1648 aa10.69□□□□□ -0.7
PTPRD-212ENST00000488774 CEP162Q5TB80 1403 aa10.69□□□□□ -0.7
PTPRD-212ENST00000488774 CFAP43Q8NDM7 1665 aa10.69□□□□□ -0.7
PTPRD-212ENST00000488774 HECW1Q76N89 1606 aa10.69□□□□□ -0.7
PTPRD-212ENST00000488774 TTC37Q6PGP7 1564 aa10.69□□□□□ -0.7
PTPRD-212ENST00000488774 ABCA9Q8IUA7 1624 aa10.68□□□□□ -0.7
PTPRD-212ENST00000488774 COL17A1Q9UMD9 1497 aaPredicted RBP10.68□□□□□ -0.7
PTPRD-212ENST00000488774 NPM1P06748 294 aaKnown RBP eCLIP10.67□□□□□ -0.7
PTPRD-212ENST00000488774 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.65□□□□□ -0.7
PTPRD-212ENST00000488774 KCNH8Q96L42 1107 aa10.65□□□□□ -0.7
PTPRD-212ENST00000488774 FMN1Q68DA7 1419 aa10.63□□□□□ -0.71
PTPRD-212ENST00000488774 CASKIN1Q8WXD9 1431 aa10.63□□□□□ -0.71
PTPRD-212ENST00000488774 CDC42BPBQ9Y5S2 1711 aa10.63□□□□□ -0.71
PTPRD-212ENST00000488774 CDC42BPAQ5VT25 1732 aa10.62□□□□□ -0.71
PTPRD-212ENST00000488774 KDM6BO15054 1643 aa10.62□□□□□ -0.71
PTPRD-212ENST00000488774 FYCO1Q9BQS8 1478 aa10.61□□□□□ -0.71
PTPRD-212ENST00000488774 ATP1B4Q9UN42 357 aaPredicted RBP10.6□□□□□ -0.71
PTPRD-212ENST00000488774 FRMPD1Q5SYB0 1578 aa10.6□□□□□ -0.71
PTPRD-212ENST00000488774 MYO5CQ9NQX4 1742 aa10.59□□□□□ -0.71
PTPRD-212ENST00000488774 CD109Q6YHK3 1445 aa10.58□□□□□ -0.72
PTPRD-212ENST00000488774 SIGLEC1Q9BZZ2 1709 aa10.58□□□□□ -0.72
PTPRD-212ENST00000488774 RICTORQ6R327 1708 aa10.58□□□□□ -0.72
PTPRD-212ENST00000488774 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.57□□□□□ -0.72
PTPRD-212ENST00000488774 HNRNPUL2Q1KMD3 747 aaKnown RBP10.57□□□□□ -0.72
PTPRD-212ENST00000488774 TROQ12816 1431 aaPredicted RBP10.55□□□□□ -0.72
PTPRD-212ENST00000488774 PREX2Q70Z35 1606 aa10.55□□□□□ -0.72
PTPRD-212ENST00000488774 TIAM1Q13009 1591 aa10.54□□□□□ -0.72
PTPRD-212ENST00000488774 CCDC18Q5T9S5 1454 aa10.54□□□□□ -0.72
PTPRD-212ENST00000488774 VPS8Q8N3P4 1428 aa10.53□□□□□ -0.72
PTPRD-212ENST00000488774 PLEKHD1A6NEE1 506 aa10.52□□□□□ -0.73
PTPRD-212ENST00000488774 ARHGEF12Q9NZN5 1544 aa10.51□□□□□ -0.73
PTPRD-212ENST00000488774 ITSN2Q9NZM3 1697 aa10.5□□□□□ -0.73
PTPRD-212ENST00000488774 TEX14Q8IWB6 1497 aa10.5□□□□□ -0.73
PTPRD-212ENST00000488774 ARAP3Q8WWN8 1544 aa10.5□□□□□ -0.73
PTPRD-212ENST00000488774 SAMD9LQ8IVG5 1584 aa10.5□□□□□ -0.73
PTPRD-212ENST00000488774 FOXD1Q16676 465 aa10.49□□□□□ -0.73
PTPRD-212ENST00000488774 KANK4Q5T7N3 995 aaPredicted RBP10.49□□□□□ -0.73
PTPRD-212ENST00000488774 PLCH2O75038 1416 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms