RNA–Protein interactions for RNA: ENST00000488016.1

NECTIN3-209, Transcript of nectin cell adhesion molecule 3, humanhuman

TSL 3

Gene NECTIN3, Length 829 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECTIN3-209ENST00000488016 PEG3Q9GZU2 1588 aa14.47□□□□□ -0.09
NECTIN3-209ENST00000488016 BAZ1BQ9UIG0 1483 aaKnown RBP14.45□□□□□ -0.1
NECTIN3-209ENST00000488016 HMGXB3Q12766 1538 aa14.45□□□□□ -0.1
NECTIN3-209ENST00000488016 RSF1Q96T23 1441 aaPredicted RBP14.42□□□□□ -0.1
NECTIN3-209ENST00000488016 SP7Q8TDD2 431 aaPredicted RBP14.41□□□□□ -0.1
NECTIN3-209ENST00000488016 FARP1Q9Y4F1 1045 aaPredicted RBP14.4□□□□□ -0.1
NECTIN3-209ENST00000488016 CUX2O14529 1486 aa14.39□□□□□ -0.11
NECTIN3-209ENST00000488016 CREBZFQ9NS37 354 aa14.38□□□□□ -0.11
NECTIN3-209ENST00000488016 C19orf67A6NJJ6 358 aa14.35□□□□□ -0.11
NECTIN3-209ENST00000488016 TRIM41Q8WV44 630 aa14.32□□□□□ -0.12
NECTIN3-209ENST00000488016 EVX2Q03828 476 aa14.3□□□□□ -0.12
NECTIN3-209ENST00000488016 NESP48681 1621 aa14.3□□□□□ -0.12
NECTIN3-209ENST00000488016 ERCC6Q03468 1493 aa14.28□□□□□ -0.12
NECTIN3-209ENST00000488016 TOP2AP11388 1531 aaKnown RBP14.25□□□□□ -0.13
NECTIN3-209ENST00000488016 CD44P16070 742 aaKnown RBP14.25□□□□□ -0.13
NECTIN3-209ENST00000488016 PLEKHG5O94827 1062 aa14.22□□□□□ -0.13
NECTIN3-209ENST00000488016 NPM1P06748 294 aaKnown RBP eCLIP14.21□□□□□ -0.13
NECTIN3-209ENST00000488016 MIER1Q8N108 512 aa14.17□□□□□ -0.14
NECTIN3-209ENST00000488016 SUPT5HO00267 1087 aaKnown RBP14.14□□□□□ -0.15
NECTIN3-209ENST00000488016 MNX1P50219 401 aaPredicted RBP14.13□□□□□ -0.15
NECTIN3-209ENST00000488016 PLCD3Q8N3E9 789 aa14.13□□□□□ -0.15
NECTIN3-209ENST00000488016 PAK3O75914 559 aaPredicted RBP14.12□□□□□ -0.15
NECTIN3-209ENST00000488016 FBXO3Q9UK99 471 aa14.12□□□□□ -0.15
NECTIN3-209ENST00000488016 LAMC3Q9Y6N6 1575 aa14.12□□□□□ -0.15
NECTIN3-209ENST00000488016 CCDC88BA6NC98 1476 aa14.12□□□□□ -0.15
NECTIN3-209ENST00000488016 CADPSQ9ULU8 1353 aa14.1□□□□□ -0.15
NECTIN3-209ENST00000488016 ZRANB1Q9UGI0 708 aa14.1□□□□□ -0.15
NECTIN3-209ENST00000488016 KIF21AQ7Z4S6 1674 aa14.1□□□□□ -0.15
NECTIN3-209ENST00000488016 GABBR2O75899 941 aa14.05□□□□□ -0.16
NECTIN3-209ENST00000488016 CFTRP13569 1480 aa14.03□□□□□ -0.16
NECTIN3-209ENST00000488016 THOC2Q8NI27 1593 aaKnown RBP14.02□□□□□ -0.16
NECTIN3-209ENST00000488016 CLCN6P51797 869 aa14.02□□□□□ -0.17
NECTIN3-209ENST00000488016 ZNF579Q8NAF0 562 aaKnown RBP14.02□□□□□ -0.17
NECTIN3-209ENST00000488016 ZBTB47Q9UFB7 747 aaPredicted RBP14.02□□□□□ -0.17
NECTIN3-209ENST00000488016 PDS5BQ9NTI5 1447 aa14.01□□□□□ -0.17
NECTIN3-209ENST00000488016 FANCD2Q9BXW9 1451 aa13.98□□□□□ -0.17
NECTIN3-209ENST00000488016 CEP164Q9UPV0 1460 aa13.94□□□□□ -0.18
NECTIN3-209ENST00000488016 TSPYL2Q9H2G4 693 aaPredicted RBP13.94□□□□□ -0.18
NECTIN3-209ENST00000488016 MRC2Q9UBG0 1479 aa13.93□□□□□ -0.18
NECTIN3-209ENST00000488016 PRDM2Q13029 1718 aa13.92□□□□□ -0.18
NECTIN3-209ENST00000488016 PHF12Q96QT6 1004 aa13.91□□□□□ -0.18
NECTIN3-209ENST00000488016 VASPP50552 380 aaPredicted RBP13.9□□□□□ -0.18
NECTIN3-209ENST00000488016 WDR62O43379 1518 aa13.88□□□□□ -0.19
NECTIN3-209ENST00000488016 URB2Q14146 1524 aaKnown RBP13.88□□□□□ -0.19
NECTIN3-209ENST00000488016 RASEFQ8IZ41 740 aa13.85□□□□□ -0.19
NECTIN3-209ENST00000488016 DCBLD2Q96PD2 775 aa13.82□□□□□ -0.2
NECTIN3-209ENST00000488016 GALR2O43603 387 aaPredicted RBP13.81□□□□□ -0.2
NECTIN3-209ENST00000488016 KLHL34Q8N239 644 aa13.81□□□□□ -0.2
NECTIN3-209ENST00000488016 CCDC61Q9Y6R9 512 aa13.81□□□□□ -0.2
NECTIN3-209ENST00000488016 NUBP1P53384 320 aa13.8□□□□□ -0.2
NECTIN3-209ENST00000488016 FAM212AQ96EL1 285 aa13.78□□□□□ -0.2
NECTIN3-209ENST00000488016 TOPBP1Q92547 1522 aa13.77□□□□□ -0.21
NECTIN3-209ENST00000488016 MS4A3Q96HJ5 214 aa13.73□□□□□ -0.21
NECTIN3-209ENST00000488016 DNMBPQ6XZF7 1577 aa13.73□□□□□ -0.21
NECTIN3-209ENST00000488016 KIF12Q96FN5 646 aa13.71□□□□□ -0.21
NECTIN3-209ENST00000488016 CUX1P39880 1505 aa13.7□□□□□ -0.22
NECTIN3-209ENST00000488016 POTEIP0CG38 1075 aa13.7□□□□□ -0.22
NECTIN3-209ENST00000488016 ABCC8Q09428 1581 aa13.68□□□□□ -0.22
NECTIN3-209ENST00000488016 DCAF8Q5TAQ9 597 aa13.68□□□□□ -0.22
NECTIN3-209ENST00000488016 ZNF608Q9ULD9 1512 aaPredicted RBP13.67□□□□□ -0.22
NECTIN3-209ENST00000488016 POLA1P09884 1462 aaPredicted RBP13.67□□□□□ -0.22
NECTIN3-209ENST00000488016 RAD54L2Q9Y4B4 1467 aa13.66□□□□□ -0.22
NECTIN3-209ENST00000488016 MAP3K13O43283 966 aa13.65□□□□□ -0.22
NECTIN3-209ENST00000488016 FGD5Q6ZNL6 1462 aa13.64□□□□□ -0.23
NECTIN3-209ENST00000488016 IFNLR1Q8IU57 520 aaPredicted RBP13.63□□□□□ -0.23
NECTIN3-209ENST00000488016 IFT140Q96RY7 1462 aa13.62□□□□□ -0.23
NECTIN3-209ENST00000488016 SYNJ1O43426 1573 aa13.62□□□□□ -0.23
NECTIN3-209ENST00000488016 TARBP1Q13395 1621 aaKnown RBP13.61□□□□□ -0.23
NECTIN3-209ENST00000488016 SPOCK2Q92563 424 aa13.61□□□□□ -0.23
NECTIN3-209ENST00000488016 GSE1Q14687 1217 aa13.6□□□□□ -0.23
NECTIN3-209ENST00000488016 RIMBP3CA6NJZ7 1639 aa13.6□□□□□ -0.23
NECTIN3-209ENST00000488016 RIMBP3BA6NNM3 1639 aa13.6□□□□□ -0.23
NECTIN3-209ENST00000488016 RIMBP3Q9UFD9 1639 aa13.6□□□□□ -0.23
NECTIN3-209ENST00000488016 SGIP1Q9BQI5 828 aa13.59□□□□□ -0.23
NECTIN3-209ENST00000488016 PCDHB13Q9Y5F0 798 aa13.59□□□□□ -0.23
NECTIN3-209ENST00000488016 EIF4G3O43432 1585 aaKnown RBP13.58□□□□□ -0.23
NECTIN3-209ENST00000488016 WRNQ14191 1432 aaPredicted RBP eCLIP13.58□□□□□ -0.24
NECTIN3-209ENST00000488016 AQRO60306 1485 aaKnown RBP eCLIP13.58□□□□□ -0.24
NECTIN3-209ENST00000488016 SOGA1O94964 1423 aa13.57□□□□□ -0.24
NECTIN3-209ENST00000488016 TDRD9Q8NDG6 1382 aaKnown RBP13.55□□□□□ -0.24
NECTIN3-209ENST00000488016 BIVM-ERCC5R4GMW8 1640 aa13.54□□□□□ -0.24
NECTIN3-209ENST00000488016 ATMINO43313 823 aaPredicted RBP13.54□□□□□ -0.24
NECTIN3-209ENST00000488016 PYGBP11216 843 aa13.54□□□□□ -0.24
NECTIN3-209ENST00000488016 ASTLQ6HA08 431 aaPredicted RBP13.54□□□□□ -0.24
NECTIN3-209ENST00000488016 TOP2BQ02880 1626 aa13.53□□□□□ -0.24
NECTIN3-209ENST00000488016 WDR97A6NE52 1622 aa13.53□□□□□ -0.24
NECTIN3-209ENST00000488016 LHX8Q68G74 356 aa13.52□□□□□ -0.25
NECTIN3-209ENST00000488016 TIE1P35590 1138 aa13.51□□□□□ -0.25
NECTIN3-209ENST00000488016 CYB5RLQ6IPT4 315 aa13.51□□□□□ -0.25
NECTIN3-209ENST00000488016 BMP2KQ9NSY1 1161 aaPredicted RBP13.5□□□□□ -0.25
NECTIN3-209ENST00000488016 TRPC6Q9Y210 931 aa13.5□□□□□ -0.25
NECTIN3-209ENST00000488016 IFNL1Q8IU54 200 aa13.49□□□□□ -0.25
NECTIN3-209ENST00000488016 CIZ1Q9ULV3 898 aaPredicted RBP13.49□□□□□ -0.25
NECTIN3-209ENST00000488016 ARHGEF11O15085 1522 aa13.49□□□□□ -0.25
NECTIN3-209ENST00000488016 PELP1Q8IZL8 1130 aaKnown RBP13.47□□□□□ -0.25
NECTIN3-209ENST00000488016 ATN1P54259 1190 aaPredicted RBP13.46□□□□□ -0.25
NECTIN3-209ENST00000488016 ABCA10Q8WWZ4 1543 aa13.45□□□□□ -0.26
NECTIN3-209ENST00000488016 SLC39A7Q92504 469 aa13.45□□□□□ -0.26
NECTIN3-209ENST00000488016 SNAPC4Q5SXM2 1469 aa13.44□□□□□ -0.26
NECTIN3-209ENST00000488016 ABCA5Q8WWZ7 1642 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms